• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 13:51:58 UTC
• checking for file ‘cbioportalR/DESCRIPTION’ ... OK
• this is package ‘cbioportalR’ version ‘1.1.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘cbioportalR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/10s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/4s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [3s/4s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/4s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0F0Ayt’ ‘~/tmp/scratch/Rtmp1JJJ4m’   ‘~/tmp/scratch/Rtmp1SqbNf’ ‘~/tmp/scratch/Rtmp222nan’   ‘~/tmp/scratch/Rtmp27WF1c’ ‘~/tmp/scratch/Rtmp2CokoQ’   ‘~/tmp/scratch/Rtmp2iqUWw’ ‘~/tmp/scratch/Rtmp3HuLW0’   ‘~/tmp/scratch/Rtmp3MnCEt’ ‘~/tmp/scratch/Rtmp4MfFlq’   ‘~/tmp/scratch/Rtmp5NNXe4’ ‘~/tmp/scratch/Rtmp5USsDK’   ‘~/tmp/scratch/Rtmp5xOrLO’ ‘~/tmp/scratch/Rtmp5zjluE’   ‘~/tmp/scratch/Rtmp6AAGp8’ ‘~/tmp/scratch/Rtmp6EKXnI’   ‘~/tmp/scratch/Rtmp6EjH12’ ‘~/tmp/scratch/Rtmp6Htqb4’   ‘~/tmp/scratch/Rtmp8G00FF’ ‘~/tmp/scratch/Rtmp8Gxs6Q’   ‘~/tmp/scratch/Rtmp8SoApM’ ‘~/tmp/scratch/Rtmp9GqcFS’   ‘~/tmp/scratch/RtmpAmAVLF’ ‘~/tmp/scratch/RtmpBECuep’   ‘~/tmp/scratch/RtmpCLhA1W’ ‘~/tmp/scratch/RtmpFMBWdI’   ‘~/tmp/scratch/RtmpFNXneR’ ‘~/tmp/scratch/RtmpIMvi02’   ‘~/tmp/scratch/RtmpJ3MdXo’ ‘~/tmp/scratch/RtmpJfSAwx’   ‘~/tmp/scratch/RtmpJmtdZa’ ‘~/tmp/scratch/RtmpJpYwgz’   ‘~/tmp/scratch/RtmpKyyUxP’ ‘~/tmp/scratch/RtmpMbyiEd’   ‘~/tmp/scratch/RtmpNWqvw2’ ‘~/tmp/scratch/RtmpNu0kAJ’   ‘~/tmp/scratch/RtmpO1U0Lw’ ‘~/tmp/scratch/RtmpOBbkhT’   ‘~/tmp/scratch/RtmpOPJ6ul’ ‘~/tmp/scratch/RtmpP6FOpq’   ‘~/tmp/scratch/RtmpPGtre7’ ‘~/tmp/scratch/RtmpPsQsmk’   ‘~/tmp/scratch/RtmpPtYAev’ ‘~/tmp/scratch/RtmpQd1Ukz’   ‘~/tmp/scratch/RtmpQwFZ9v’ ‘~/tmp/scratch/RtmpR9rG4b’   ‘~/tmp/scratch/RtmpRCNE3H’ ‘~/tmp/scratch/RtmpRV6FLD’   ‘~/tmp/scratch/RtmpS4YzOL’ ‘~/tmp/scratch/RtmpSFXpj0’   ‘~/tmp/scratch/RtmpSNbquA’ ‘~/tmp/scratch/RtmpTJJ2GQ’   ‘~/tmp/scratch/RtmpUfNk65’ ‘~/tmp/scratch/RtmpUiW8MP’   ‘~/tmp/scratch/RtmpW8VFBP’ ‘~/tmp/scratch/RtmpWWDK9o’   ‘~/tmp/scratch/RtmpWk6Dvo’ ‘~/tmp/scratch/RtmpWoFjwY’   ‘~/tmp/scratch/RtmpXESHk2’ ‘~/tmp/scratch/RtmpYr4X0Z’   ‘~/tmp/scratch/RtmpZX4WDt’ ‘~/tmp/scratch/RtmpZbvo4F’   ‘~/tmp/scratch/RtmpZiYVag’ ‘~/tmp/scratch/RtmpaEVWHo’   ‘~/tmp/scratch/RtmpaNtkGb’ ‘~/tmp/scratch/RtmpaqxtqU’   ‘~/tmp/scratch/Rtmpbb9yl7’ ‘~/tmp/scratch/Rtmpctbo1Q’   ‘~/tmp/scratch/Rtmpd7R6xE’ ‘~/tmp/scratch/RtmpfAnt02’   ‘~/tmp/scratch/RtmpfMEsOs’ ‘~/tmp/scratch/RtmpfgePZc’   ‘~/tmp/scratch/RtmpfnjSR3’ ‘~/tmp/scratch/RtmpgmGG9R’   ‘~/tmp/scratch/RtmpiGkkIC’ ‘~/tmp/scratch/RtmpiyiJZ2’   ‘~/tmp/scratch/Rtmpj6bY7l’ ‘~/tmp/scratch/Rtmpj7I9NO’   ‘~/tmp/scratch/RtmpjjPvZa’ ‘~/tmp/scratch/RtmpjzMWJg’   ‘~/tmp/scratch/RtmpkIHwXt’ ‘~/tmp/scratch/RtmpkYBG9l’   ‘~/tmp/scratch/Rtmpl6VqXj’ ‘~/tmp/scratch/RtmplBzMPG’   ‘~/tmp/scratch/RtmpmfmqeD’ ‘~/tmp/scratch/Rtmpnee3vP’   ‘~/tmp/scratch/RtmpoF96cf’ ‘~/tmp/scratch/RtmpoUf4ff’   ‘~/tmp/scratch/RtmppByMEf’ ‘~/tmp/scratch/RtmpplOQJx’   ‘~/tmp/scratch/RtmpqUk9NK’ ‘~/tmp/scratch/RtmpqdEM9H’   ‘~/tmp/scratch/RtmprOpm8W’ ‘~/tmp/scratch/RtmpsdY7sD’   ‘~/tmp/scratch/Rtmptl7BIM’ ‘~/tmp/scratch/RtmptyQD8p’   ‘~/tmp/scratch/Rtmpub6WR7’ ‘~/tmp/scratch/RtmpuuDU4X’   ‘~/tmp/scratch/RtmpvvH9LU’ ‘~/tmp/scratch/Rtmpw1qjeh’   ‘~/tmp/scratch/Rtmpw26dPH’ ‘~/tmp/scratch/Rtmpwhk878’   ‘~/tmp/scratch/Rtmpx1Nrxq’ ‘~/tmp/scratch/Rtmpx2sMuA’   ‘~/tmp/scratch/Rtmpy4GNe4’ ‘~/tmp/scratch/RtmpydU6z4’   ‘~/tmp/scratch/RtmpytkoPU’ ‘~/tmp/scratch/RtmpyyRZcS’   ‘~/tmp/scratch/xvfb-run.2RfFLr’ ‘~/tmp/scratch/xvfb-run.2o2t5B’   ‘~/tmp/scratch/xvfb-run.2ssaoI’ ‘~/tmp/scratch/xvfb-run.3ZiJEo’   ‘~/tmp/scratch/xvfb-run.5R32yI’ ‘~/tmp/scratch/xvfb-run.6LNkoN’   ‘~/tmp/scratch/xvfb-run.7u8ZbB’ ‘~/tmp/scratch/xvfb-run.ApEzXA’   ‘~/tmp/scratch/xvfb-run.G0cxRu’ ‘~/tmp/scratch/xvfb-run.I0DS0r’   ‘~/tmp/scratch/xvfb-run.I9oSgQ’ ‘~/tmp/scratch/xvfb-run.ITuw6C’   ‘~/tmp/scratch/xvfb-run.IbEDGe’ ‘~/tmp/scratch/xvfb-run.LPdSPb’   ‘~/tmp/scratch/xvfb-run.R466A5’ ‘~/tmp/scratch/xvfb-run.RQ7Sxt’   ‘~/tmp/scratch/xvfb-run.Ryd48y’ ‘~/tmp/scratch/xvfb-run.SHERou’   ‘~/tmp/scratch/xvfb-run.SbZDuh’ ‘~/tmp/scratch/xvfb-run.Y5EC1D’   ‘~/tmp/scratch/xvfb-run.YlYWdp’ ‘~/tmp/scratch/xvfb-run.a9FszK’   ‘~/tmp/scratch/xvfb-run.dOOxZk’ ‘~/tmp/scratch/xvfb-run.g7qLZV’   ‘~/tmp/scratch/xvfb-run.h07hJM’ ‘~/tmp/scratch/xvfb-run.jQSGq2’   ‘~/tmp/scratch/xvfb-run.kj7ssW’ ‘~/tmp/scratch/xvfb-run.l630G8’   ‘~/tmp/scratch/xvfb-run.oC41P4’ ‘~/tmp/scratch/xvfb-run.p9l1oZ’   ‘~/tmp/scratch/xvfb-run.pol0cW’ ‘~/tmp/scratch/xvfb-run.uvaLmv’   ‘~/tmp/scratch/xvfb-run.y3oamz’ ‘~/tmp/scratch/xvfb-run.yb1Cy7’   ‘~/tmp/scratch/xvfb-run.zfpjyR’ ‘~/tmp/scratch/xvfb-run.zrAOgT’
• DONE

Status: 1 NOTE