- using R Under development (unstable) (2026-07-30 r90327)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-16 (Debian 16.1.0-3) 16.1.0
GNU Fortran (Debian 16.1.0-3) 16.1.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-07-31 13:50:34 UTC
- checking for file ‘cataScience/DESCRIPTION’ ... OK
- this is package ‘cataScience’ version ‘2.1.2’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘cataScience’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s/4s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [0s/0s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [103s/141s] ERROR
Running ‘testthat.R’ [103s/140s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(cataScience)
>
> test_check("cataScience")
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
Attaching package: 'readr'
The following objects are masked from 'package:testthat':
edition_get, local_edition
Attaching package: 'bslib'
The following object is masked from 'package:utils':
page
Attaching package: 'DT'
The following objects are masked from 'package:shiny':
dataTableOutput, renderDataTable
Attaching package: 'plotly'
The following object is masked from 'package:ggplot2':
last_plot
The following object is masked from 'package:stats':
filter
The following object is masked from 'package:graphics':
layout
Attaching package: 'rio'
The following object is masked from 'package:plotly':
export
Attaching package: 'naniar'
The following object is masked from 'package:skimr':
n_complete
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 380 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-app-builds.R:10:3'): app.R builds a shiny app object ───────────
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─base::source("app.R", local = env) at test-app-builds.R:10:3
2. ├─base::withVisible(eval(ei, envir))
3. └─base::eval(ei, envir)
4. └─base::eval(ei, envir)
5. ├─base::source("R/app-ui.R", local = TRUE)
6. │ ├─base::withVisible(eval(ei, envir))
7. │ └─base::eval(ei, envir)
8. │ └─base::eval(ei, envir)
9. ├─bslib::navset_card_tab(...)
10. │ └─bslib:::navset_card(...)
11. │ └─bslib:::collect_nav_items(..., wrapper = wrapper)
12. │ └─rlang::list2(...)
13. ├─bslib::nav_panel("Background", md_page("background-import.md"))
14. │ └─bslib:::tabPanel_(title, ..., value = value, icon = icon)
15. │ └─htmltools::div(...)
16. │ └─rlang::dots_list(...)
17. └─md_page("background-import.md")
18. ├─htmltools::div(...)
19. │ └─rlang::dots_list(...)
20. └─htmltools::includeMarkdown(file.path("markdown", file))
21. └─markdown::mark(path, output = NULL)
22. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file)
23. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)
24. └─base::file(con, "w")
── Error ('test-app-builds.R:20:3'): the whole UI renders to HTML ──────────────
Error in `file(con, "w")`: cannot open the connection
Backtrace:
▆
1. └─base::source("app.R", local = env) at test-app-builds.R:20:3
2. ├─base::withVisible(eval(ei, envir))
3. └─base::eval(ei, envir)
4. └─base::eval(ei, envir)
5. ├─base::source("R/app-ui.R", local = TRUE)
6. │ ├─base::withVisible(eval(ei, envir))
7. │ └─base::eval(ei, envir)
8. │ └─base::eval(ei, envir)
9. ├─bslib::navset_card_tab(...)
10. │ └─bslib:::navset_card(...)
11. │ └─bslib:::collect_nav_items(..., wrapper = wrapper)
12. │ └─rlang::list2(...)
13. ├─bslib::nav_panel("Background", md_page("background-import.md"))
14. │ └─bslib:::tabPanel_(title, ..., value = value, icon = icon)
15. │ └─htmltools::div(...)
16. │ └─rlang::dots_list(...)
17. └─md_page("background-import.md")
18. ├─htmltools::div(...)
19. │ └─rlang::dots_list(...)
20. └─htmltools::includeMarkdown(file.path("markdown", file))
21. └─markdown::mark(path, output = NULL)
22. └─xfun::write_utf8(c("---", yaml, "---", parts$body), file)
23. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)
24. └─base::file(con, "w")
[ FAIL 2 | WARN 2 | SKIP 0 | PASS 380 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [3s/5s] OK
- checking HTML version of manual ... [0s/0s] OK
- checking for non-standard things in the check directory ... OK
- checking for new files in some other directories ... NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0F0Ayt’ ‘~/tmp/scratch/Rtmp0FNjfL’
‘~/tmp/scratch/Rtmp0Qpxa3’ ‘~/tmp/scratch/Rtmp0TZAHS’
‘~/tmp/scratch/Rtmp0qqgTV’ ‘~/tmp/scratch/Rtmp1QGsPF’
‘~/tmp/scratch/Rtmp29kmJL’ ‘~/tmp/scratch/Rtmp2FeDb1’
‘~/tmp/scratch/Rtmp31x6OZ’ ‘~/tmp/scratch/Rtmp3HuLW0’
‘~/tmp/scratch/Rtmp3KrSiE’ ‘~/tmp/scratch/Rtmp3cyWpu’
‘~/tmp/scratch/Rtmp434Xdl’ ‘~/tmp/scratch/Rtmp4L8UkA’
‘~/tmp/scratch/Rtmp4WnZmT’ ‘~/tmp/scratch/Rtmp4hhrLs’
‘~/tmp/scratch/Rtmp4vSEDN’ ‘~/tmp/scratch/Rtmp5NNXe4’
‘~/tmp/scratch/Rtmp5zjluE’ ‘~/tmp/scratch/Rtmp69apby’
‘~/tmp/scratch/Rtmp6EjH12’ ‘~/tmp/scratch/Rtmp7pOPNs’
‘~/tmp/scratch/Rtmp8G00FF’ ‘~/tmp/scratch/Rtmp8q2u0G’
‘~/tmp/scratch/Rtmp9HZPF2’ ‘~/tmp/scratch/Rtmp9m157b’
‘~/tmp/scratch/RtmpAB9yvO’ ‘~/tmp/scratch/RtmpAVQNWs’
‘~/tmp/scratch/RtmpB0PV4E’ ‘~/tmp/scratch/RtmpCnMoYN’
‘~/tmp/scratch/RtmpDhSFbV’ ‘~/tmp/scratch/RtmpEcgzYx’
‘~/tmp/scratch/RtmpEgfr6T’ ‘~/tmp/scratch/RtmpFCunu3’
‘~/tmp/scratch/RtmpFSYKEc’ ‘~/tmp/scratch/RtmpFZp69F’
‘~/tmp/scratch/RtmpGS5Bbe’ ‘~/tmp/scratch/RtmpGjflL4’
‘~/tmp/scratch/RtmpHvdsku’ ‘~/tmp/scratch/RtmpIMvi02’
‘~/tmp/scratch/RtmpIYiQKE’ ‘~/tmp/scratch/RtmpIqEDRj’
‘~/tmp/scratch/RtmpJ3MdXo’ ‘~/tmp/scratch/RtmpJ8o4h2’
‘~/tmp/scratch/RtmpJLNcWJ’ ‘~/tmp/scratch/RtmpJpYwgz’
‘~/tmp/scratch/RtmpKyyUxP’ ‘~/tmp/scratch/RtmpLKJTy1’
‘~/tmp/scratch/RtmpLLeYzS’ ‘~/tmp/scratch/RtmpMHxzqn’
‘~/tmp/scratch/RtmpMXCMyI’ ‘~/tmp/scratch/RtmpNWqvw2’
‘~/tmp/scratch/RtmpOBbkhT’ ‘~/tmp/scratch/RtmpOIPLgh’
‘~/tmp/scratch/RtmpPGtre7’ ‘~/tmp/scratch/RtmpPguWJV’
‘~/tmp/scratch/RtmpPsQsmk’ ‘~/tmp/scratch/RtmpPtYAev’
‘~/tmp/scratch/RtmpQE8gf1’ ‘~/tmp/scratch/RtmpQd1Ukz’
‘~/tmp/scratch/RtmpQklkdH’ ‘~/tmp/scratch/RtmpQwFZ9v’
‘~/tmp/scratch/RtmpR9rG4b’ ‘~/tmp/scratch/RtmpRCNE3H’
‘~/tmp/scratch/RtmpRV6FLD’ ‘~/tmp/scratch/RtmpRZVCKb’
‘~/tmp/scratch/RtmpRo5Chd’ ‘~/tmp/scratch/RtmpRxiyuR’
‘~/tmp/scratch/RtmpS9HDum’ ‘~/tmp/scratch/RtmpSNbquA’
‘~/tmp/scratch/RtmpSPV7H4’ ‘~/tmp/scratch/RtmpSWa8eY’
‘~/tmp/scratch/RtmpSlrPuv’ ‘~/tmp/scratch/RtmpUiW8MP’
‘~/tmp/scratch/RtmpUiy7N2’ ‘~/tmp/scratch/RtmpVCMMNh’
‘~/tmp/scratch/RtmpVd4USj’ ‘~/tmp/scratch/RtmpW3HJ8a’
‘~/tmp/scratch/RtmpW8VFBP’ ‘~/tmp/scratch/RtmpWID66x’
‘~/tmp/scratch/RtmpWP6eh7’ ‘~/tmp/scratch/RtmpWPycTg’
‘~/tmp/scratch/RtmpWY15qU’ ‘~/tmp/scratch/RtmpWk6Dvo’
‘~/tmp/scratch/RtmpWoFjwY’ ‘~/tmp/scratch/RtmpX9nkbN’
‘~/tmp/scratch/RtmpXESHk2’ ‘~/tmp/scratch/RtmpXmpqZL’
‘~/tmp/scratch/RtmpXq6f03’ ‘~/tmp/scratch/RtmpXwvYEg’
‘~/tmp/scratch/RtmpYtuSRL’ ‘~/tmp/scratch/RtmpZC1EVS’
‘~/tmp/scratch/RtmpZP2oj1’ ‘~/tmp/scratch/RtmpZX4WDt’
‘~/tmp/scratch/RtmpZbvo4F’ ‘~/tmp/scratch/RtmpaJmSFP’
‘~/tmp/scratch/RtmpaZgFK5’ ‘~/tmp/scratch/Rtmpaw14mU’
‘~/tmp/scratch/Rtmpbe2rj5’ ‘~/tmp/scratch/Rtmpc8qts8’
‘~/tmp/scratch/RtmpcdlCci’ ‘~/tmp/scratch/RtmpdIIOPJ’
‘~/tmp/scratch/RtmpdKusOE’ ‘~/tmp/scratch/Rtmpdt18GO’
‘~/tmp/scratch/Rtmpezr1Kh’ ‘~/tmp/scratch/RtmpfAnt02’
‘~/tmp/scratch/RtmpfIGh5u’ ‘~/tmp/scratch/RtmpfgePZc’
‘~/tmp/scratch/RtmpfnjSR3’ ‘~/tmp/scratch/RtmpgAYwha’
‘~/tmp/scratch/RtmphDFjTQ’ ‘~/tmp/scratch/RtmphNx2VK’
‘~/tmp/scratch/RtmphsqtQF’ ‘~/tmp/scratch/RtmpiGkkIC’
‘~/tmp/scratch/Rtmpj6bY7l’ ‘~/tmp/scratch/Rtmpj7I9NO’
‘~/tmp/scratch/Rtmpjf2XP7’ ‘~/tmp/scratch/RtmpjjPvZa’
‘~/tmp/scratch/RtmpjzMWJg’ ‘~/tmp/scratch/RtmplBzMPG’
‘~/tmp/scratch/RtmplDn3qC’ ‘~/tmp/scratch/Rtmpm3MkKi’
‘~/tmp/scratch/RtmpmmRKFy’ ‘~/tmp/scratch/RtmpmottpO’
‘~/tmp/scratch/RtmpnQViMS’ ‘~/tmp/scratch/Rtmpnee3vP’
‘~/tmp/scratch/Rtmpo7q00p’ ‘~/tmp/scratch/Rtmpotwn8D’
‘~/tmp/scratch/RtmpovWaAk’ ‘~/tmp/scratch/RtmppAM76g’
‘~/tmp/scratch/RtmpqSLx0Q’ ‘~/tmp/scratch/RtmpqdEM9H’
‘~/tmp/scratch/RtmprUmxhb’ ‘~/tmp/scratch/Rtmprn0bGk’
‘~/tmp/scratch/RtmprrpDmD’ ‘~/tmp/scratch/Rtmps7RRrc’
‘~/tmp/scratch/RtmpsnjjK0’ ‘~/tmp/scratch/RtmptNHkW5’
‘~/tmp/scratch/RtmptRe0aq’ ‘~/tmp/scratch/Rtmptl7BIM’
‘~/tmp/scratch/RtmptnRXqk’ ‘~/tmp/scratch/RtmptyQD8p’
‘~/tmp/scratch/RtmpuwZ2Sv’ ‘~/tmp/scratch/RtmpvGbLuO’
‘~/tmp/scratch/RtmpveRFos’ ‘~/tmp/scratch/RtmpwJnRgc’
‘~/tmp/scratch/RtmpwWOooZ’ ‘~/tmp/scratch/Rtmpwhv6ch’
‘~/tmp/scratch/Rtmpx2sMuA’ ‘~/tmp/scratch/RtmpyBdXGf’
‘~/tmp/scratch/RtmpyMSnrI’ ‘~/tmp/scratch/RtmpyWVBfT’
‘~/tmp/scratch/RtmpyYi8vc’ ‘~/tmp/scratch/RtmpyaLMzp’
‘~/tmp/scratch/RtmpydU6z4’ ‘~/tmp/scratch/RtmpzOkscs’
‘~/tmp/scratch/RtmpzSxflh’ ‘~/tmp/scratch/ccysWvKm.s’
‘~/tmp/scratch/xvfb-run.0cBwco’ ‘~/tmp/scratch/xvfb-run.0eit70’
‘~/tmp/scratch/xvfb-run.1i5XsF’ ‘~/tmp/scratch/xvfb-run.2o2t5B’
‘~/tmp/scratch/xvfb-run.2ssaoI’ ‘~/tmp/scratch/xvfb-run.3SDehb’
‘~/tmp/scratch/xvfb-run.3z8QfQ’ ‘~/tmp/scratch/xvfb-run.5R32yI’
‘~/tmp/scratch/xvfb-run.5sG4Oe’ ‘~/tmp/scratch/xvfb-run.6LNkoN’
‘~/tmp/scratch/xvfb-run.7G19h2’ ‘~/tmp/scratch/xvfb-run.8YJnik’
‘~/tmp/scratch/xvfb-run.9fG7e7’ ‘~/tmp/scratch/xvfb-run.ACSLqs’
‘~/tmp/scratch/xvfb-run.ApEzXA’ ‘~/tmp/scratch/xvfb-run.Bszano’
‘~/tmp/scratch/xvfb-run.CIhONS’ ‘~/tmp/scratch/xvfb-run.G0cxRu’
‘~/tmp/scratch/xvfb-run.G66i2b’ ‘~/tmp/scratch/xvfb-run.H57Zq7’
‘~/tmp/scratch/xvfb-run.HATiUD’ ‘~/tmp/scratch/xvfb-run.HsUk8X’
‘~/tmp/scratch/xvfb-run.I0DS0r’ ‘~/tmp/scratch/xvfb-run.IbEDGe’
‘~/tmp/scratch/xvfb-run.J9QbRL’ ‘~/tmp/scratch/xvfb-run.L2gpeT’
‘~/tmp/scratch/xvfb-run.LqApEz’ ‘~/tmp/scratch/xvfb-run.M4xfV9’
‘~/tmp/scratch/xvfb-run.N8OP90’ ‘~/tmp/scratch/xvfb-run.N9sEkv’
‘~/tmp/scratch/xvfb-run.P0Zt81’ ‘~/tmp/scratch/xvfb-run.R466A5’
‘~/tmp/scratch/xvfb-run.RQ7Sxt’ ‘~/tmp/scratch/xvfb-run.Ryd48y’
‘~/tmp/scratch/xvfb-run.SbZDuh’ ‘~/tmp/scratch/xvfb-run.Vaowgr’
‘~/tmp/scratch/xvfb-run.YO4Dls’ ‘~/tmp/scratch/xvfb-run.YXO3vV’
‘~/tmp/scratch/xvfb-run.YlYWdp’ ‘~/tmp/scratch/xvfb-run.Ys0iQs’
‘~/tmp/scratch/xvfb-run.a9FszK’ ‘~/tmp/scratch/xvfb-run.athLbJ’
‘~/tmp/scratch/xvfb-run.exvuzj’ ‘~/tmp/scratch/xvfb-run.f9PTC1’
‘~/tmp/scratch/xvfb-run.g7qLZV’ ‘~/tmp/scratch/xvfb-run.h07hJM’
‘~/tmp/scratch/xvfb-run.hX37M9’ ‘~/tmp/scratch/xvfb-run.jQSGq2’
‘~/tmp/scratch/xvfb-run.kj7ssW’ ‘~/tmp/scratch/xvfb-run.l630G8’
‘~/tmp/scratch/xvfb-run.nFj4Ni’ ‘~/tmp/scratch/xvfb-run.p9l1oZ’
‘~/tmp/scratch/xvfb-run.pol0cW’ ‘~/tmp/scratch/xvfb-run.qxBDTF’
‘~/tmp/scratch/xvfb-run.rmiMOa’ ‘~/tmp/scratch/xvfb-run.tC8DR5’
‘~/tmp/scratch/xvfb-run.tZrRe9’ ‘~/tmp/scratch/xvfb-run.uUwBNg’
‘~/tmp/scratch/xvfb-run.uu13PM’ ‘~/tmp/scratch/xvfb-run.uvaLmv’
‘~/tmp/scratch/xvfb-run.vDK7XL’ ‘~/tmp/scratch/xvfb-run.vDOxhg’
‘~/tmp/scratch/xvfb-run.xNNihP’ ‘~/tmp/scratch/xvfb-run.y3oamz’
‘~/tmp/scratch/xvfb-run.zfpjyR’
- DONE
Status: 1 ERROR, 1 NOTE