• using R Under development (unstable) (2026-06-06 r90114)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-1) 16.1.0     GNU Fortran (Debian 16.1.0-1) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-06-07 12:12:17 UTC
• checking for file ‘cancerradarr/DESCRIPTION’ ... OK
• this is package ‘cancerradarr’ version ‘3.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Packages suggested but not available for checking: 'plotly', 'tidyverse'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘cancerradarr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/11s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [6s/7s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [202s/224s] ERROR   Running ‘testthat.R’ [202s/223s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(cancerradarr)   >   > test_check("cancerradarr")         processing file: static_report.Rmd      Quitting from static_report.Rmd:45-62 [unnamed-chunk-2]   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   <error/rlang_error>   Error in `library()`:   ! there is no package called 'tidyverse'   ---   Backtrace:       x    1. \-base::library("tidyverse")   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      Saving _problems/test-read_cancerradar_output_02-105.R      > input_file_test.xlsx has been created, please fill it with cancer registry data   > Reading /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cancerradarr/extdata/ex_cancerRADAR_input_filled.xlsx   > Reference population aggregation   custom aggregation ========>---------------------- 25% | ETA: 4s      > Aggregation level: un_region    - Data aggregation..   custom aggregation ====>-------------------------- 15% | ETA: 21s   custom aggregation ========>---------------------- 25% | ETA: 20s   custom aggregation ===============>--------------- 50% | ETA: 10s   custom aggregation ===================>----------- 62% | ETA: 7s   custom aggregation ========================>------ 79% | ETA: 4s   custom aggregation ========================>------ 81% | ETA: 4s   custom aggregation =========================>----- 84% | ETA: 4s   custom aggregation ==========================>---- 88% | ETA: 4s       - Incidence rates (ir)..    - Proportional rates (pr)..    - Crude incidence rates (cir)..    - Age-standardized incidence rate (asir)..    - Crude incidence rates ratio (cirr)..    - Age-standardized incidence rates ratio (asirr)..    - Crude incidence rates difference (cird)..    - Age-standardized incidence rates difference (asird)..    - Indirect standardized incidence ratio (sir)..    - Proportional incidence ratio (pir)..    - Total number of cancer..   > Aggregation level: un_subregion    - Data aggregation..   custom aggregation ==>---------------------------- 7% | ETA: 37s   custom aggregation ==>---------------------------- 8% | ETA: 1m   custom aggregation ===>--------------------------- 10% | ETA: 1m   custom aggregation ====>-------------------------- 13% | ETA: 1m   custom aggregation =====>------------------------- 18% | ETA: 1m   custom aggregation =======>----------------------- 24% | ETA: 1m   custom aggregation =========>--------------------- 29% | ETA: 49s   custom aggregation =========>--------------------- 31% | ETA: 1m   custom aggregation ==============>---------------- 45% | ETA: 31s   custom aggregation ===============>--------------- 50% | ETA: 29s   custom aggregation ================>-------------- 53% | ETA: 29s   custom aggregation ================>-------------- 55% | ETA: 29s   custom aggregation ==================>------------ 58% | ETA: 27s   custom aggregation ====================>---------- 67% | ETA: 20s   custom aggregation ======================>-------- 72% | ETA: 17s   custom aggregation =======================>------- 76% | ETA: 15s   custom aggregation ========================>------ 82% | ETA: 11s   custom aggregation ===========================>--- 91% | ETA: 5s   custom aggregation =============================>- 96% | ETA: 2s       - Incidence rates (ir)..    - Proportional rates (pr)..    - Crude incidence rates (cir)..    - Age-standardized incidence rate (asir)..    - Crude incidence rates ratio (cirr)..    - Age-standardized incidence rates ratio (asirr)..    - Crude incidence rates difference (cird)..    - Age-standardized incidence rates difference (asird)..    - Indirect standardized incidence ratio (sir)..    - Proportional incidence ratio (pir)..    - Total number of cancer..   > Aggregation level: hdi_cat    - Data aggregation..   custom aggregation ======>------------------------ 20% | ETA: 16s   custom aggregation ========>---------------------- 25% | ETA: 22s   custom aggregation =========>--------------------- 29% | ETA: 25s   custom aggregation ================>-------------- 54% | ETA: 11s   custom aggregation =====================>--------- 69% | ETA: 7s   custom aggregation ==========================>---- 87% | ETA: 3s       - Incidence rates (ir)..    - Proportional rates (pr)..    - Crude incidence rates (cir)..    - Age-standardized incidence rate (asir)..    - Crude incidence rates ratio (cirr)..    - Age-standardized incidence rates ratio (asirr)..    - Crude incidence rates difference (cird)..    - Age-standardized incidence rates difference (asird)..    - Indirect standardized incidence ratio (sir)..    - Proportional incidence ratio (pir)..    - Total number of cancer..   > Aggregation level: any_migr    - Data aggregation..       - Incidence rates (ir)..    - Proportional rates (pr)..    - Crude incidence rates (cir)..    - Age-standardized incidence rate (asir)..    - Crude incidence rates ratio (cirr)..    - Age-standardized incidence rates ratio (asirr)..    - Crude incidence rates difference (cird)..    - Age-standardized incidence rates difference (asird)..    - Indirect standardized incidence ratio (sir)..    - Proportional incidence ratio (pir)..    - Total number of cancer..   > Aggregation level: asr_rank_cat    - Data aggregation..   custom aggregation ==>---------------------------- 8% | ETA: 20s   custom aggregation ========>---------------------- 26% | ETA: 14s   custom aggregation =============>----------------- 43% | ETA: 11s   custom aggregation ====================>---------- 67% | ETA: 5s       - Incidence rates (ir)..    - Proportional rates (pr)..    - Crude incidence rates (cir)..    - Age-standardized incidence rate (asir)..    - Crude incidence rates ratio (cirr)..    - Age-standardized incidence rates ratio (asirr)..    - Crude incidence rates difference (cird)..    - Age-standardized incidence rates difference (asird)..    - Indirect standardized incidence ratio (sir)..    - Proportional incidence ratio (pir)..    - Total number of cancer..      > /tmp/RtmpfdE3rr/file2ba09b4e915bfe.xlsx created!         processing file: static_report.Rmd      Quitting from static_report.Rmd:45-62 [unnamed-chunk-2]   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   <error/rlang_error>   Error in `library()`:   ! there is no package called 'tidyverse'   ---   Backtrace:       x    1. \-base::library("tidyverse")   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~      [ FAIL 3 | WARN 0 | SKIP 0 | PASS 262 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-create_static_report.R:35:5'): create_static_report works with example output file ──   Error in `library("tidyverse")`: there is no package called 'tidyverse'   Backtrace:       ▆    1. └─base::library("tidyverse")   ── Error ('test-read_cancerradar_output_02.R:105:5'): read_cancerradar_output_02 contains only expected index values ──   Error in `unzip(file, exdir = xmlDir)`: cannot open file '/tmp/RtmpfdE3rr/file2ba09b2fb95e47/xl/worksheets/sheet16.xml': No space left on device   Backtrace:       ▆    1. └─cancerradarr::read_cancerradar_output_02(filename.out, "un_region") at test-read_cancerradar_output_02.R:105:5    2. └─openxlsx::loadWorkbook(filename.out)    3. └─utils::unzip(file, exdir = xmlDir)   ── Error ('test_cancerradarr.R:38:3'): Output file creation ────────────────────   Error in `library("tidyverse")`: there is no package called 'tidyverse'   Backtrace:       ▆    1. └─base::library("tidyverse")      [ FAIL 3 | WARN 0 | SKIP 0 | PASS 262 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [5s/6s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘getting-started.qmd’ using html  [31m processing file: getting-started.qmd  [39m [31moutput file: getting-started.knit.md  [39m [1mpandoc [22m   to: html   output-file: getting-started.html   standalone: true   embed-resources: true   wrap: none   default-image-extension: png   css:     - >-       /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/quarto/rmarkdown/template/quarto_vignette/resources/vignette.css   toc: true   variables: {}     [1mmetadata [22m   document-css: false   lang: en   engines:     - path: /opt/quarto/share/extension-subtrees/julia-engine/_extensions/julia-engine/julia-engine.js   minimal: true   theme: none   title: Cancer RADAR - Getting Started   editor: visual   vignette: |     %\VignetteIndexEntry{getting-started} %\VignetteEngine{quarto::html} %\VignetteEncoding{UTF-8}     [91mERROR: No space left on device (os error 28): tmpdir Stack trace:     at makeTempDirSync (ext:deno_fs/30_fs.js:160:10)     at file:///opt/quarto/bin/quarto.js:98542:29     at withAttempts (file:///opt/quarto/bin/quarto.js:98495:14)     at Object.makeTempDirSync (file:///opt/quarto/bin/quarto.js:98542:10)     at Object.createDir (file:///opt/quarto/bin/quarto.js:26228:19)     at file:///opt/quarto/bin/quarto.js:130934:52     at withTimingAsync (file:///opt/quarto/bin/quarto.js:15978:27)     at Object.complete (file:///opt/quarto/bin/quarto.js:130928:15)     at Object.onPostProcess (file:///opt/quarto/bin/quarto.js:136868:45)     at renderFileInternal (file:///opt/quarto/bin/quarto.js:136852:24)     at eventLoopTick (ext:core/01_core.js:179:7)     at async renderFiles (file:///opt/quarto/bin/quarto.js:136571:9)     at async render (file:///opt/quarto/bin/quarto.js:142225:19)     at async _Command.actionHandler (file:///opt/quarto/bin/quarto.js:142470:24)     at async _Command.execute (file:///opt/quarto/bin/quarto.js:102091:7)     at async _Command.parseCommand (file:///opt/quarto/bin/quarto.js:101968:14)     at async quarto4 (file:///opt/quarto/bin/quarto.js:187649:5)     at async file:///opt/quarto/bin/quarto.js:187677:5     at async file:///opt/quarto/bin/quarto.js:187532:14     at async mainRunner (file:///opt/quarto/bin/quarto.js:187534:5)     at async file:///opt/quarto/bin/quarto.js:187670:3 [39m Error: processing vignette 'getting-started.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error: ! Could not evaluate cli `{}` expression: `getting-started`. Caused by error: ! object 'getting' not found --- failed re-building ‘getting-started.qmd’ SUMMARY: processing the following file failed:   ‘getting-started.qmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [3s/4s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs