• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 13:40:45 UTC
• checking for file ‘biotools/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘biotools’ version ‘4.3’
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘biotools’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/9s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/6s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/2s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0iERDm’ ‘~/tmp/scratch/Rtmp0rzOEj’   ‘~/tmp/scratch/Rtmp2UCymO’ ‘~/tmp/scratch/Rtmp2YPk3t’   ‘~/tmp/scratch/Rtmp2rnh1O’ ‘~/tmp/scratch/Rtmp3GuXz7’   ‘~/tmp/scratch/Rtmp43zPZa’ ‘~/tmp/scratch/Rtmp4OETUj’   ‘~/tmp/scratch/Rtmp537bZN’ ‘~/tmp/scratch/Rtmp59jjhe’   ‘~/tmp/scratch/Rtmp5LnwZm’ ‘~/tmp/scratch/Rtmp5elfyP’   ‘~/tmp/scratch/Rtmp7Ath1O’ ‘~/tmp/scratch/Rtmp7mmPt1’   ‘~/tmp/scratch/Rtmp7xSiTy’ ‘~/tmp/scratch/Rtmp8oHlLt’   ‘~/tmp/scratch/Rtmp8svxDI’ ‘~/tmp/scratch/Rtmp9V00dF’   ‘~/tmp/scratch/Rtmp9yHMAN’ ‘~/tmp/scratch/Rtmp9yW7wI’   ‘~/tmp/scratch/RtmpA0w1eS’ ‘~/tmp/scratch/RtmpA7BwKR’   ‘~/tmp/scratch/RtmpAeRvoV’ ‘~/tmp/scratch/RtmpAloLBZ’   ‘~/tmp/scratch/RtmpB8itfO’ ‘~/tmp/scratch/RtmpBEO000’   ‘~/tmp/scratch/RtmpCBoa0t’ ‘~/tmp/scratch/RtmpCyn8Uz’   ‘~/tmp/scratch/RtmpDVkF1A’ ‘~/tmp/scratch/RtmpDgRAUu’   ‘~/tmp/scratch/RtmpDkU3ps’ ‘~/tmp/scratch/RtmpEKciPI’   ‘~/tmp/scratch/RtmpERDhjB’ ‘~/tmp/scratch/RtmpEhGm0R’   ‘~/tmp/scratch/RtmpEp6iPF’ ‘~/tmp/scratch/RtmpEr2Fmh’   ‘~/tmp/scratch/RtmpF7WzVc’ ‘~/tmp/scratch/RtmpFqJgVD’   ‘~/tmp/scratch/RtmpG3EdWZ’ ‘~/tmp/scratch/RtmpGuT6n4’   ‘~/tmp/scratch/RtmpIYZZa3’ ‘~/tmp/scratch/RtmpJWRnBZ’   ‘~/tmp/scratch/RtmpJgZiKN’ ‘~/tmp/scratch/RtmpJxlvX6’   ‘~/tmp/scratch/RtmpKqxN2q’ ‘~/tmp/scratch/RtmpKxYtYn’   ‘~/tmp/scratch/RtmpLJu09o’ ‘~/tmp/scratch/RtmpLoWQF5’   ‘~/tmp/scratch/RtmpLsceud’ ‘~/tmp/scratch/RtmpMRq75W’   ‘~/tmp/scratch/RtmpNERkjs’ ‘~/tmp/scratch/RtmpOTKYbO’   ‘~/tmp/scratch/RtmpOpqDI7’ ‘~/tmp/scratch/RtmpPEIpNr’   ‘~/tmp/scratch/RtmpPPCjFX’ ‘~/tmp/scratch/RtmpPl1NKu’   ‘~/tmp/scratch/RtmpR95fwq’ ‘~/tmp/scratch/RtmpRolagk’   ‘~/tmp/scratch/RtmpSk9nR5’ ‘~/tmp/scratch/RtmpTNITgL’   ‘~/tmp/scratch/RtmpTQhfZJ’ ‘~/tmp/scratch/RtmpTUI3JW’   ‘~/tmp/scratch/RtmpUKnabU’ ‘~/tmp/scratch/RtmpUphFEK’   ‘~/tmp/scratch/RtmpVM8VHe’ ‘~/tmp/scratch/RtmpWkSQbf’   ‘~/tmp/scratch/RtmpXP36I6’ ‘~/tmp/scratch/RtmpY3gpzZ’   ‘~/tmp/scratch/RtmpZtoj8I’ ‘~/tmp/scratch/Rtmpa7B9YI’   ‘~/tmp/scratch/RtmpaHdIdX’ ‘~/tmp/scratch/Rtmpad3v9r’   ‘~/tmp/scratch/RtmpayeK5d’ ‘~/tmp/scratch/RtmpbTfdRs’   ‘~/tmp/scratch/RtmpcxPRFH’ ‘~/tmp/scratch/RtmpdshaKt’   ‘~/tmp/scratch/RtmpeDpHxD’ ‘~/tmp/scratch/RtmpeuGWAn’   ‘~/tmp/scratch/Rtmpez0r8u’ ‘~/tmp/scratch/RtmpfUsAt0’   ‘~/tmp/scratch/Rtmpfmd72B’ ‘~/tmp/scratch/Rtmpg4MSFQ’   ‘~/tmp/scratch/Rtmph0vw4b’ ‘~/tmp/scratch/RtmphDmocA’   ‘~/tmp/scratch/RtmphNWy9b’ ‘~/tmp/scratch/RtmphyHOif’   ‘~/tmp/scratch/RtmpiSGRkx’ ‘~/tmp/scratch/RtmpirwDiD’   ‘~/tmp/scratch/Rtmpittwb0’ ‘~/tmp/scratch/Rtmpj8e31K’   ‘~/tmp/scratch/RtmpkAkyrq’ ‘~/tmp/scratch/RtmpkFIAlO’   ‘~/tmp/scratch/RtmpkGBHKJ’ ‘~/tmp/scratch/RtmpkgSUHi’   ‘~/tmp/scratch/RtmpklXvi9’ ‘~/tmp/scratch/RtmpmfIPxD’   ‘~/tmp/scratch/RtmpncdFH2’ ‘~/tmp/scratch/RtmppDW48d’   ‘~/tmp/scratch/RtmppKPD6d’ ‘~/tmp/scratch/Rtmppjv1ul’   ‘~/tmp/scratch/Rtmpq5pmMN’ ‘~/tmp/scratch/RtmpqDejTd’   ‘~/tmp/scratch/RtmpqUiMLA’ ‘~/tmp/scratch/RtmpqWhh5U’   ‘~/tmp/scratch/RtmprAQ8Fb’ ‘~/tmp/scratch/RtmpsEdpee’   ‘~/tmp/scratch/RtmpskrGpl’ ‘~/tmp/scratch/RtmptZ0HFz’   ‘~/tmp/scratch/Rtmpu7kMvy’ ‘~/tmp/scratch/Rtmput9Q5J’   ‘~/tmp/scratch/Rtmpv8qlbD’ ‘~/tmp/scratch/RtmpvrXsmb’   ‘~/tmp/scratch/Rtmpvtxf2k’ ‘~/tmp/scratch/RtmpxejHkC’   ‘~/tmp/scratch/Rtmpxgx3zA’ ‘~/tmp/scratch/RtmpxxNWCB’   ‘~/tmp/scratch/RtmpzKD9nl’ ‘~/tmp/scratch/xvfb-run.0ppNDr’   ‘~/tmp/scratch/xvfb-run.1wY1x0’ ‘~/tmp/scratch/xvfb-run.4B7dXq’   ‘~/tmp/scratch/xvfb-run.4CV1x7’ ‘~/tmp/scratch/xvfb-run.4uwzXY’   ‘~/tmp/scratch/xvfb-run.8ZfuCo’ ‘~/tmp/scratch/xvfb-run.8nKLdY’   ‘~/tmp/scratch/xvfb-run.8wg8uK’ ‘~/tmp/scratch/xvfb-run.FBtOVg’   ‘~/tmp/scratch/xvfb-run.FNBRVp’ ‘~/tmp/scratch/xvfb-run.JyHJ4Q’   ‘~/tmp/scratch/xvfb-run.KJZQCu’ ‘~/tmp/scratch/xvfb-run.L9eC0v’   ‘~/tmp/scratch/xvfb-run.MHyz2D’ ‘~/tmp/scratch/xvfb-run.P5fIJU’   ‘~/tmp/scratch/xvfb-run.QKS66j’ ‘~/tmp/scratch/xvfb-run.RJ98vU’   ‘~/tmp/scratch/xvfb-run.VDrxcD’ ‘~/tmp/scratch/xvfb-run.Zu7IYy’   ‘~/tmp/scratch/xvfb-run.Zx0ynD’ ‘~/tmp/scratch/xvfb-run.bURES3’   ‘~/tmp/scratch/xvfb-run.c7o5ho’ ‘~/tmp/scratch/xvfb-run.dG50ma’   ‘~/tmp/scratch/xvfb-run.eoIknN’ ‘~/tmp/scratch/xvfb-run.gVYrKM’   ‘~/tmp/scratch/xvfb-run.iZragB’ ‘~/tmp/scratch/xvfb-run.kwt9OX’   ‘~/tmp/scratch/xvfb-run.l8quFd’ ‘~/tmp/scratch/xvfb-run.ljnPeE’   ‘~/tmp/scratch/xvfb-run.lwdrig’ ‘~/tmp/scratch/xvfb-run.mSpBAd’   ‘~/tmp/scratch/xvfb-run.pVYQpJ’ ‘~/tmp/scratch/xvfb-run.qLyqsQ’   ‘~/tmp/scratch/xvfb-run.sgITkX’ ‘~/tmp/scratch/xvfb-run.topzSY’   ‘~/tmp/scratch/xvfb-run.uCbL7X’ ‘~/tmp/scratch/xvfb-run.wd9mxV’   ‘~/tmp/scratch/xvfb-run.yqWBCt’ ‘~/tmp/scratch/xvfb-run.z8lBne’   ‘~/tmp/scratch/xvfb-run.zVMWUF’
• DONE

Status: 1 NOTE