• using R Under development (unstable) (2024-10-07 r87211)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-3) 14.2.0     GNU Fortran (Debian 14.2.0-3) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘biogrowth/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘biogrowth’ version ‘1.0.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘biogrowth’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/15s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   DynamicGrowth.Rd: geom_line   FitDynamicGrowth.Rd: geom_line, geom_point   FitDynamicGrowthMCMC.Rd: geom_line, geom_point   FitIsoGrowth.Rd: modFit, geom_line, geom_point   FitMultipleDynamicGrowth.Rd: geom_line   FitMultipleGrowthMCMC.Rd: geom_line   FitSecondaryGrowth.Rd: modFit   GlobalGrowthFit.Rd: geom_line   GrowthFit.Rd: geom_line, geom_point   GrowthPrediction.Rd: geom_line   GrowthUncertainty.Rd: geom_line, geom_ribbon   IsothermalGrowth.Rd: geom_line   StochasticGrowth.Rd: geom_line, geom_ribbon   TimeDistribution.Rd: geom_histogram   check_growth_guess.Rd: ggplot   dBaranyi.Rd: ode   fit_growth.Rd: modFit, modMCMC   fit_isothermal_growth.Rd: modFit   fit_multiple_growth.Rd: modFit   fit_multiple_growth_MCMC.Rd: modMCMC   fit_secondary_growth.Rd: modFit   get_dyna_residuals.Rd: modFit, modCost   get_multi_dyna_residuals.Rd: modFit   predict_dynamic_growth.Rd: ode   predict_growth.Rd: ode   show_guess_dynamic.Rd: ggplot   show_guess_primary.Rd: ggplot Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [13s/15s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [226s/289s] OK
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [3s/5s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE