• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 13:39:52 UTC
• checking for file ‘biocharkitgui/DESCRIPTION’ ... OK
• this is package ‘biocharkitgui’ version ‘0.3.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘biocharkitgui’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [0s/0s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [3s/4s] ERROR   Running ‘testthat.R’ [2s/3s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(biocharkitgui)   >   > test_check("biocharkitgui")   [ FAIL 2 | WARN 2 | SKIP 0 | PASS 58 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-report.R:41:3'): gui_render_report renders a real HTML file from a populated store ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─biocharkitgui::gui_render_report(store, out) at test-report.R:41:3    2. └─rmarkdown::render(...)    3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    4. └─xfun::write_utf8(res, output)    5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    6. └─base::file(con, "w")   ── Error ('test-report.R:58:3'): gui_render_report handles an entirely empty store gracefully ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─biocharkitgui::gui_render_report(empty_store, out) at test-report.R:58:3    2. └─rmarkdown::render(...)    3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    4. └─xfun::write_utf8(res, output)    5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    6. └─base::file(con, "w")      [ FAIL 2 | WARN 2 | SKIP 0 | PASS 58 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp04FEIH’ ‘~/tmp/scratch/Rtmp20ev0K’   ‘~/tmp/scratch/Rtmp25eNO2’ ‘~/tmp/scratch/Rtmp3V8cQr’   ‘~/tmp/scratch/Rtmp41auYs’ ‘~/tmp/scratch/Rtmp461vau’   ‘~/tmp/scratch/Rtmp46azb7’ ‘~/tmp/scratch/Rtmp4DmXIP’   ‘~/tmp/scratch/Rtmp5Sgdox’ ‘~/tmp/scratch/Rtmp6OjS8m’   ‘~/tmp/scratch/Rtmp873yqo’ ‘~/tmp/scratch/Rtmp8QHvoq’   ‘~/tmp/scratch/Rtmp8iatFe’ ‘~/tmp/scratch/Rtmp9EaZZr’   ‘~/tmp/scratch/RtmpB7Ycij’ ‘~/tmp/scratch/RtmpBFj7Ui’   ‘~/tmp/scratch/RtmpCx065s’ ‘~/tmp/scratch/RtmpD7Tj2O’   ‘~/tmp/scratch/RtmpD8Xtuc’ ‘~/tmp/scratch/RtmpE5pMZl’   ‘~/tmp/scratch/RtmpEHa0km’ ‘~/tmp/scratch/RtmpETyojF’   ‘~/tmp/scratch/RtmpEWarDX’ ‘~/tmp/scratch/RtmpG9Ntnu’   ‘~/tmp/scratch/RtmpGGzsaX’ ‘~/tmp/scratch/RtmpGZIlbv’   ‘~/tmp/scratch/RtmpHAQa99’ ‘~/tmp/scratch/RtmpISNfyv’   ‘~/tmp/scratch/RtmpK8CKYX’ ‘~/tmp/scratch/RtmpKOiB52’   ‘~/tmp/scratch/RtmpKQORKL’ ‘~/tmp/scratch/RtmpKwQT1E’   ‘~/tmp/scratch/RtmpL6aT3u’ ‘~/tmp/scratch/RtmpLEzrjP’   ‘~/tmp/scratch/RtmpLfkf9R’ ‘~/tmp/scratch/RtmpLnfGaf’   ‘~/tmp/scratch/RtmpMPBlbp’ ‘~/tmp/scratch/RtmpNATgEO’   ‘~/tmp/scratch/RtmpNTfXrM’ ‘~/tmp/scratch/RtmpOYf4Q9’   ‘~/tmp/scratch/RtmpOzUwP1’ ‘~/tmp/scratch/RtmpPDMK4D’   ‘~/tmp/scratch/RtmpPbgX4K’ ‘~/tmp/scratch/RtmpQUcua7’   ‘~/tmp/scratch/RtmpQWh7r0’ ‘~/tmp/scratch/RtmpQftWav’   ‘~/tmp/scratch/RtmpRlwD3F’ ‘~/tmp/scratch/RtmpSJsxcD’   ‘~/tmp/scratch/RtmpSwFrtj’ ‘~/tmp/scratch/RtmpTbsK8c’   ‘~/tmp/scratch/RtmpTehHQq’ ‘~/tmp/scratch/RtmpUA8EUe’   ‘~/tmp/scratch/RtmpWCwqOT’ ‘~/tmp/scratch/RtmpWFX4Vx’   ‘~/tmp/scratch/RtmpWUwKEG’ ‘~/tmp/scratch/RtmpWoZmc5’   ‘~/tmp/scratch/RtmpWucyyY’ ‘~/tmp/scratch/RtmpX962vI’   ‘~/tmp/scratch/RtmpXC5CWY’ ‘~/tmp/scratch/RtmpZIdrMS’   ‘~/tmp/scratch/RtmpZat3Zb’ ‘~/tmp/scratch/RtmpaCkSMc’   ‘~/tmp/scratch/Rtmpaxv94b’ ‘~/tmp/scratch/Rtmpbaz3AO’   ‘~/tmp/scratch/RtmpbqjZra’ ‘~/tmp/scratch/RtmpcNcJFG’   ‘~/tmp/scratch/RtmpcPZvt6’ ‘~/tmp/scratch/RtmpdSlGW7’   ‘~/tmp/scratch/RtmpeZVlby’ ‘~/tmp/scratch/RtmpeaydB0’   ‘~/tmp/scratch/RtmpebVmcw’ ‘~/tmp/scratch/RtmpgIK7jt’   ‘~/tmp/scratch/RtmpiN9LaO’ ‘~/tmp/scratch/RtmpiNvzcX’   ‘~/tmp/scratch/RtmpjMTuy0’ ‘~/tmp/scratch/RtmpjjVDMN’   ‘~/tmp/scratch/RtmpkFir2n’ ‘~/tmp/scratch/RtmpkQ7HmA’   ‘~/tmp/scratch/Rtmpkq9zcj’ ‘~/tmp/scratch/RtmpkrV78p’   ‘~/tmp/scratch/RtmplR1uRF’ ‘~/tmp/scratch/Rtmplsftdm’   ‘~/tmp/scratch/RtmplvRtKp’ ‘~/tmp/scratch/Rtmpm6ADq0’   ‘~/tmp/scratch/RtmpmKTbLh’ ‘~/tmp/scratch/RtmpmlS4IN’   ‘~/tmp/scratch/RtmpmtwQdb’ ‘~/tmp/scratch/RtmpmxeOAr’   ‘~/tmp/scratch/RtmpnAMGvR’ ‘~/tmp/scratch/RtmpnW986z’   ‘~/tmp/scratch/RtmpnwMiTF’ ‘~/tmp/scratch/RtmpobrljH’   ‘~/tmp/scratch/Rtmpp5WAaT’ ‘~/tmp/scratch/RtmppIc6Cg’   ‘~/tmp/scratch/RtmppmnzLc’ ‘~/tmp/scratch/RtmpqVuIti’   ‘~/tmp/scratch/RtmprdOfds’ ‘~/tmp/scratch/Rtmprg2GIj’   ‘~/tmp/scratch/Rtmpt9BqMg’ ‘~/tmp/scratch/Rtmptteg8b’   ‘~/tmp/scratch/Rtmputv65F’ ‘~/tmp/scratch/RtmpuuWXmJ’   ‘~/tmp/scratch/Rtmpw1qWmZ’ ‘~/tmp/scratch/RtmpwWiOcZ’   ‘~/tmp/scratch/Rtmpwoe7RS’ ‘~/tmp/scratch/Rtmpwun9aA’   ‘~/tmp/scratch/RtmpwvtoKr’ ‘~/tmp/scratch/RtmpyJ22gi’   ‘~/tmp/scratch/RtmpyQM4fB’ ‘~/tmp/scratch/RtmpyTzDe4’   ‘~/tmp/scratch/RtmpyWaYt5’ ‘~/tmp/scratch/RtmpzPTv87’   ‘~/tmp/scratch/Rtmpzja1G5’ ‘~/tmp/scratch/xvfb-run.0tEMkh’   ‘~/tmp/scratch/xvfb-run.1zNTCi’ ‘~/tmp/scratch/xvfb-run.38OBHJ’   ‘~/tmp/scratch/xvfb-run.3w0AwF’ ‘~/tmp/scratch/xvfb-run.5ee6Kn’   ‘~/tmp/scratch/xvfb-run.7pslLN’ ‘~/tmp/scratch/xvfb-run.8NCZrB’   ‘~/tmp/scratch/xvfb-run.Bda17j’ ‘~/tmp/scratch/xvfb-run.EXuIgc’   ‘~/tmp/scratch/xvfb-run.J67uLh’ ‘~/tmp/scratch/xvfb-run.LSuxpt’   ‘~/tmp/scratch/xvfb-run.OjGJec’ ‘~/tmp/scratch/xvfb-run.OvcAVW’   ‘~/tmp/scratch/xvfb-run.P9Ifca’ ‘~/tmp/scratch/xvfb-run.QZXiI8’   ‘~/tmp/scratch/xvfb-run.TCTEqx’ ‘~/tmp/scratch/xvfb-run.TaYGAZ’   ‘~/tmp/scratch/xvfb-run.U9Dzyp’ ‘~/tmp/scratch/xvfb-run.WMr58n’   ‘~/tmp/scratch/xvfb-run.Y3dfaa’ ‘~/tmp/scratch/xvfb-run.YNvJa9’   ‘~/tmp/scratch/xvfb-run.ZQWbO9’ ‘~/tmp/scratch/xvfb-run.ZxFLgY’   ‘~/tmp/scratch/xvfb-run.bPyyzx’ ‘~/tmp/scratch/xvfb-run.dH6xmp’   ‘~/tmp/scratch/xvfb-run.dyUjZZ’ ‘~/tmp/scratch/xvfb-run.jN8Tds’   ‘~/tmp/scratch/xvfb-run.l7hguN’ ‘~/tmp/scratch/xvfb-run.qRDhhw’   ‘~/tmp/scratch/xvfb-run.qymvAC’ ‘~/tmp/scratch/xvfb-run.sQuGeG’   ‘~/tmp/scratch/xvfb-run.sZZYMt’ ‘~/tmp/scratch/xvfb-run.tqRXhP’   ‘~/tmp/scratch/xvfb-run.uXzHKv’ ‘~/tmp/scratch/xvfb-run.v1Q8o3’   ‘~/tmp/scratch/xvfb-run.wNW70d’ ‘~/tmp/scratch/xvfb-run.zvSFIE’
• DONE

Status: 1 ERROR, 1 NOTE