• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 13:40:02 UTC
• checking for file ‘binseqtest/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘binseqtest’ version ‘1.0.4’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Michael P. Fay <mfay@niaid.nih.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Jenn",                       family = "Kirk",                       role = "aut"),                person(given = c("Michael", "P."),                       family = "Fay",                       role = c("aut", "cre"),                       email = "mfay@niaid.nih.gov")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘binseqtest’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/7s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in ‘demo’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [3s/4s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0y5aKz’ ‘~/tmp/scratch/Rtmp2Ru2gT’   ‘~/tmp/scratch/Rtmp2WCQfC’ ‘~/tmp/scratch/Rtmp4sOIV9’   ‘~/tmp/scratch/Rtmp7MsxGq’ ‘~/tmp/scratch/Rtmp7kvif1’   ‘~/tmp/scratch/Rtmp8GvNq9’ ‘~/tmp/scratch/Rtmp9e04BB’   ‘~/tmp/scratch/RtmpA5FLVQ’ ‘~/tmp/scratch/RtmpA6PJdG’   ‘~/tmp/scratch/RtmpAE7Afz’ ‘~/tmp/scratch/RtmpAJM72g’   ‘~/tmp/scratch/RtmpBTD1YI’ ‘~/tmp/scratch/RtmpBmn0ms’   ‘~/tmp/scratch/RtmpCKIk5b’ ‘~/tmp/scratch/RtmpCfyyCd’   ‘~/tmp/scratch/RtmpCpH1Li’ ‘~/tmp/scratch/RtmpD3eBnZ’   ‘~/tmp/scratch/RtmpE4fLgO’ ‘~/tmp/scratch/RtmpEHdrtO’   ‘~/tmp/scratch/RtmpFQB8Aj’ ‘~/tmp/scratch/RtmpFiYeHV’   ‘~/tmp/scratch/RtmpGZZVfv’ ‘~/tmp/scratch/RtmpHhukMR’   ‘~/tmp/scratch/RtmpI5Fiaa’ ‘~/tmp/scratch/RtmpI9T8lM’   ‘~/tmp/scratch/RtmpL1Yyo7’ ‘~/tmp/scratch/RtmpLGQx3D’   ‘~/tmp/scratch/RtmpLOMWo3’ ‘~/tmp/scratch/RtmpLacdMK’   ‘~/tmp/scratch/RtmpM35CE2’ ‘~/tmp/scratch/RtmpNMaa7L’   ‘~/tmp/scratch/RtmpO142qW’ ‘~/tmp/scratch/RtmpOHcN0S’   ‘~/tmp/scratch/RtmpPTX2Lr’ ‘~/tmp/scratch/RtmpQ3oODQ’   ‘~/tmp/scratch/RtmpQYG6zo’ ‘~/tmp/scratch/RtmpQvkSUS’   ‘~/tmp/scratch/RtmpQxjPWG’ ‘~/tmp/scratch/RtmpSgYJAD’   ‘~/tmp/scratch/RtmpSoIm52’ ‘~/tmp/scratch/RtmpTYf0vu’   ‘~/tmp/scratch/RtmpTehRU3’ ‘~/tmp/scratch/RtmpTgtkYT’   ‘~/tmp/scratch/RtmpTxQ1Z6’ ‘~/tmp/scratch/RtmpU0ByYD’   ‘~/tmp/scratch/RtmpUGlVvy’ ‘~/tmp/scratch/RtmpUL9CIS’   ‘~/tmp/scratch/RtmpUUTQxj’ ‘~/tmp/scratch/RtmpV176od’   ‘~/tmp/scratch/RtmpVAGhjM’ ‘~/tmp/scratch/RtmpVgQcG1’   ‘~/tmp/scratch/RtmpViO403’ ‘~/tmp/scratch/RtmpW3YjmN’   ‘~/tmp/scratch/RtmpWSPDnt’ ‘~/tmp/scratch/RtmpWxLdCj’   ‘~/tmp/scratch/RtmpY5HQ4F’ ‘~/tmp/scratch/RtmpYNTjac’   ‘~/tmp/scratch/RtmpYPgYLD’ ‘~/tmp/scratch/RtmpZTofvu’   ‘~/tmp/scratch/RtmpZYHoo1’ ‘~/tmp/scratch/RtmpZuR3Av’   ‘~/tmp/scratch/RtmpaZIS6T’ ‘~/tmp/scratch/RtmpbcK0d3’   ‘~/tmp/scratch/RtmpcEu2JF’ ‘~/tmp/scratch/RtmpcOhYRn’   ‘~/tmp/scratch/RtmpdnAH1R’ ‘~/tmp/scratch/RtmpewUr3W’   ‘~/tmp/scratch/RtmpeyutxH’ ‘~/tmp/scratch/Rtmpf92R6U’   ‘~/tmp/scratch/RtmpgAKBAz’ ‘~/tmp/scratch/RtmpgPmv2e’   ‘~/tmp/scratch/Rtmpge2rFd’ ‘~/tmp/scratch/RtmphFf8vy’   ‘~/tmp/scratch/RtmpiGDOeh’ ‘~/tmp/scratch/Rtmpk5YgWZ’   ‘~/tmp/scratch/RtmpkTvOqm’ ‘~/tmp/scratch/Rtmpl4lV8V’   ‘~/tmp/scratch/Rtmpl4sB5I’ ‘~/tmp/scratch/RtmplWexhT’   ‘~/tmp/scratch/RtmplitYSL’ ‘~/tmp/scratch/Rtmpm5nnx0’   ‘~/tmp/scratch/Rtmpnx40p1’ ‘~/tmp/scratch/Rtmpo5nVqD’   ‘~/tmp/scratch/RtmpoL6aRE’ ‘~/tmp/scratch/RtmpoaGMBv’   ‘~/tmp/scratch/RtmppM4wzz’ ‘~/tmp/scratch/RtmppSV7fU’   ‘~/tmp/scratch/RtmppuxHEH’ ‘~/tmp/scratch/RtmpuTkYVC’   ‘~/tmp/scratch/RtmpuW6g9g’ ‘~/tmp/scratch/RtmpuYG86l’   ‘~/tmp/scratch/RtmpumrYIS’ ‘~/tmp/scratch/Rtmpv4PMDx’   ‘~/tmp/scratch/RtmpvXCnO0’ ‘~/tmp/scratch/RtmpwyK2V1’   ‘~/tmp/scratch/RtmpxXvls7’ ‘~/tmp/scratch/Rtmpys459z’   ‘~/tmp/scratch/xvfb-run.1cmvcP’ ‘~/tmp/scratch/xvfb-run.1oXgJu’   ‘~/tmp/scratch/xvfb-run.2nGqPI’ ‘~/tmp/scratch/xvfb-run.7BcIfY’   ‘~/tmp/scratch/xvfb-run.8HVC3U’ ‘~/tmp/scratch/xvfb-run.8VGkLu’   ‘~/tmp/scratch/xvfb-run.ADXlmn’ ‘~/tmp/scratch/xvfb-run.CL3mcn’   ‘~/tmp/scratch/xvfb-run.CVfflr’ ‘~/tmp/scratch/xvfb-run.DatKpG’   ‘~/tmp/scratch/xvfb-run.DpoaCk’ ‘~/tmp/scratch/xvfb-run.EECdri’   ‘~/tmp/scratch/xvfb-run.FiQ2tq’ ‘~/tmp/scratch/xvfb-run.GmBSGd’   ‘~/tmp/scratch/xvfb-run.J5HnLh’ ‘~/tmp/scratch/xvfb-run.MwlwoA’   ‘~/tmp/scratch/xvfb-run.Okwqs4’ ‘~/tmp/scratch/xvfb-run.QX4Ebi’   ‘~/tmp/scratch/xvfb-run.Rlxbb4’ ‘~/tmp/scratch/xvfb-run.VaIqAV’   ‘~/tmp/scratch/xvfb-run.XT46HJ’ ‘~/tmp/scratch/xvfb-run.ZBKVya’   ‘~/tmp/scratch/xvfb-run.aBdNo5’ ‘~/tmp/scratch/xvfb-run.aJQhq2’   ‘~/tmp/scratch/xvfb-run.cMboE0’ ‘~/tmp/scratch/xvfb-run.cni8J1’   ‘~/tmp/scratch/xvfb-run.gCKNMe’ ‘~/tmp/scratch/xvfb-run.hNaF1l’   ‘~/tmp/scratch/xvfb-run.i5v15E’ ‘~/tmp/scratch/xvfb-run.nA1ino’   ‘~/tmp/scratch/xvfb-run.pDJxUs’ ‘~/tmp/scratch/xvfb-run.pNbRKG’   ‘~/tmp/scratch/xvfb-run.qldGBZ’ ‘~/tmp/scratch/xvfb-run.t3CS57’   ‘~/tmp/scratch/xvfb-run.vUiLi1’ ‘~/tmp/scratch/xvfb-run.wCMBBu’   ‘~/tmp/scratch/xvfb-run.yYO9p4’ ‘~/tmp/scratch/xvfb-run.ycKWkV’
• DONE

Status: 2 NOTEs