- using R Under development (unstable) (2026-07-22 r90289)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-16 (Debian 16.1.0-2) 16.1.0
GNU Fortran (Debian 16.1.0-2) 16.1.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-07-23 13:30:53 UTC
- checking for file ‘bbmle/DESCRIPTION’ ... OK
- this is package ‘bbmle’ version ‘1.0.25.1’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘bbmle’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s/17s] NOTE
Found calls to structure() using deprecated special names:
bbmle/tests/binomtest1.R (.Names: 1)
bbmle/tests/formulatest.R (.Label: 2, .Names: 2)
bbmle/tests/mortanal.R (.Label: 2, .Names: 1)
bbmle/tests/startvals2.R (.Names: 2, .Label: 1)
'.Names' should be changed to 'names'.
'.Label' should be changed to 'levels'.
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [4s/6s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [88s/107s] NOTE
Running ‘BIC.R’ [2s/2s]
Comparing ‘BIC.Rout’ to ‘BIC.Rout.save’ ... OK
Running ‘ICtab.R’ [2s/2s]
Comparing ‘ICtab.Rout’ to ‘ICtab.Rout.save’ ... OK
Running ‘RUnit-tests.R’ [0s/0s]
Running ‘binomtest1.R’ [2s/3s]
Comparing ‘binomtest1.Rout’ to ‘binomtest1.Rout.save’ ...
12,14d11
< Warning message:
< In structure(list(Initial = as.integer(c(5, 5, 10, 10, 15, 15, 20, :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘boundstest.R’ [0s/0s]
Running ‘controleval.R’ [2s/2s]
Comparing ‘controleval.Rout’ to ‘controleval.Rout.save’ ... OK
Running ‘eval.R’ [2s/3s]
Comparing ‘eval.Rout’ to ‘eval.Rout.save’ ... OK
Running ‘formulatest.R’ [3s/3s]
Comparing ‘formulatest.Rout’ to ‘formulatest.Rout.save’ ...
29,31d28
< Warning message:
< In structure(list(TBL = as.integer(c(9, 9, 9, 12, 12, 12, 21, 21, :
< Replacing special names '.Names' is deprecated; use 'names' instead.
335,341d331
< Warning messages:
< 1: In structure(as.integer(c(2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, :
< Replacing special names '.Label' is deprecated; use 'levels' instead.
< 2: In structure(as.integer(c(15, 15, 15, 15, 15, 15, 15, 15, 15, 15, :
< Replacing special names '.Label' is deprecated; use 'levels' instead.
< 3: In structure(list(exper = as.integer(c(1, 1, 1, 1, 1, 1, 1, 1, 1, :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘glmcomp.R’ [3s/3s]
Comparing ‘glmcomp.Rout’ to ‘glmcomp.Rout.save’ ... OK
Running ‘gradient_vecpar_profile.R’ [13s/16s]
Comparing ‘gradient_vecpar_profile.Rout’ to ‘gradient_vecpar_profile.Rout.save’ ... OK
Running ‘grtest1.R’ [2s/2s]
Comparing ‘grtest1.Rout’ to ‘grtest1.Rout.save’ ... OK
Running ‘impsamp.R’ [2s/2s]
Running ‘methods.R’ [2s/2s]
Comparing ‘methods.Rout’ to ‘methods.Rout.save’ ... OK
Running ‘mortanal.R’ [2s/3s]
Comparing ‘mortanal.Rout’ to ‘mortanal.Rout.save’ ...
48,54d47
< Warning messages:
< 1: In structure(as.integer(c(20, 77, 79, 21, 33, 40, 11, 28, 43, 85, :
< Replacing special names '.Label' is deprecated; use 'levels' instead.
< 2: In structure(as.integer(c(5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, 5, :
< Replacing special names '.Label' is deprecated; use 'levels' instead.
< 3: In structure(list(indiv = structure(as.integer(c(20, 77, 79, 21, :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘optimize.R’ [2s/2s]
Comparing ‘optimize.Rout’ to ‘optimize.Rout.save’ ... OK
Running ‘optimizers.R’ [2s/2s]
Comparing ‘optimizers.Rout’ to ‘optimizers.Rout.save’ ... OK
Running ‘optimx.R’ [9s/11s]
Comparing ‘optimx.Rout’ to ‘optimx.Rout.save’ ... OK
Running ‘order.R’ [2s/2s]
Comparing ‘order.Rout’ to ‘order.Rout.save’ ... OK
Running ‘parscale.R’ [2s/2s]
Comparing ‘parscale.Rout’ to ‘parscale.Rout.save’ ... OK
Running ‘predict.R’ [2s/2s]
Comparing ‘predict.Rout’ to ‘predict.Rout.save’ ... OK
Running ‘prof_newmin.R’ [2s/2s]
Running ‘prof_spec.R’ [2s/2s]
Running ‘profbound.R’ [2s/2s]
Comparing ‘profbound.Rout’ to ‘profbound.Rout.save’ ... OK
Running ‘richards.R’ [11s/14s]
Comparing ‘richards.Rout’ to ‘richards.Rout.save’ ... OK
Running ‘startvals.R’ [2s/2s]
Comparing ‘startvals.Rout’ to ‘startvals.Rout.save’ ... OK
Running ‘startvals2.R’ [2s/2s]
Comparing ‘startvals2.Rout’ to ‘startvals2.Rout.save’ ...
165,171d164
< Warning messages:
< 1: In structure(c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, :
< Replacing special names '.Label' is deprecated; use 'levels' instead.
< 2: In structure(c(34L, 57L, 77L, 114L, 115L, 116L, 117L, 125L, 141L, :
< Replacing special names '.Names' is deprecated; use 'names' instead.
< 3: In structure(list(TOTCONES = c(19, 42, 40, 68, 5, 0, 21, 114, 37, :
< Replacing special names '.Names' is deprecated; use 'names' instead.
Running ‘test-relist1.R’ [2s/2s]
Comparing ‘test-relist1.Rout’ to ‘test-relist1.Rout.save’ ... OK
Running ‘testbounds.R’ [2s/2s]
Comparing ‘testbounds.Rout’ to ‘testbounds.Rout.save’ ... OK
Running ‘testderiv.R’ [2s/2s]
Comparing ‘testderiv.Rout’ to ‘testderiv.Rout.save’ ... OK
Running ‘testenv.R’ [2s/2s]
Comparing ‘testenv.Rout’ to ‘testenv.Rout.save’ ... OK
Running ‘testparpred.R’ [2s/2s]
Comparing ‘testparpred.Rout’ to ‘testparpred.Rout.save’ ... OK
Running ‘tmptest.R’ [2s/2s]
Comparing ‘tmptest.Rout’ to ‘tmptest.Rout.save’ ... OK
Running ‘update.R’ [2s/2s]
Comparing ‘update.Rout’ to ‘update.Rout.save’ ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [22s/28s] OK
- checking PDF version of manual ... [4s/6s] OK
- checking HTML version of manual ... [1s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 NOTEs