* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘bayesImageS’ ...
** this is package ‘bayesImageS’ version ‘0.6-1’
** package ‘bayesImageS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/tmp/Rtmp5PdEyK/R.INSTALL274d5031b7191c/bayesImageS/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PottsUtil.cpp -o PottsUtil.o
PottsUtil.cpp:82: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
   82 | #pragma omp parallel for shared(indices)
PottsUtil.cpp:96: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
   96 | #pragma omp parallel for reduction(+:total)
PottsUtil.cpp:174: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  174 | #pragma omp parallel for
PottsUtil.cpp:217: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  217 | #pragma omp parallel for
PottsUtil.cpp:335: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  335 | #pragma omp parallel for
PottsUtil.cpp:359: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  359 | #pragma omp parallel for reduction(+:num,denom)
PottsUtil.cpp:378: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
  378 | #pragma omp parallel for
PottsUtil.cpp: In function ‘double sum_logs(arma::vec)’:
PottsUtil.cpp:123:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  123 |     if (arma::is_finite(log_prob(i)))
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from PottsUtil.h:23,
                 from PottsUtil.cpp:20:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c bayesImageS_init.cpp -o bayesImageS_init.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mcmcPotts.cpp -o mcmcPotts.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c smcPotts.cpp -o smcPotts.o
smcPotts.cpp: In function ‘double effectiveSampleSize(const arma::vec&)’:
smcPotts.cpp:134:22: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  134 |   if (arma::is_finite(res)) return res;
      |       ~~~~~~~~~~~~~~~^~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from smcPotts.h:4,
                 from smcPotts.cpp:20:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
smcPotts.cpp: In function ‘Rcpp::NumericVector subsample(Rcpp::NumericVector&, arma::vec&, unsigned int)’:
smcPotts.cpp:194:26: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  194 |       if (arma::is_finite(log_wt(j)))
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
smcPotts.cpp: In function ‘Rcpp::IntegerVector resample_resid(Rcpp::NumericVector&, arma::vec&, Rcpp::NumericMatrix&)’:
smcPotts.cpp:217:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  217 |     if (arma::is_finite(log_wt(i)))
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
smcPotts.cpp:239:26: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  239 |       if (arma::is_finite(log_wt(j)))
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
smcPotts.cpp: In function ‘double weightedMean(const Rcpp::NumericVector&, const arma::vec&)’:
smcPotts.cpp:258:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  258 |     if (arma::is_finite(log_weights[i]))
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
smcPotts.cpp: In function ‘double weightedVariance(const Rcpp::NumericVector&, const arma::vec&, double)’:
smcPotts.cpp:273:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  273 |     if (arma::is_finite(log_weights[i]))
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
smcPotts.cpp: In function ‘unsigned int rwmhParticles(Rcpp::NumericVector&, const arma::vec&, Rcpp::NumericMatrix&, double, const double*, unsigned int, double, unsigned int, const arma::umat&, const std::vector<arma::Col<unsigned int> >&, arma::mat, arma::mat, bool)’:
smcPotts.cpp:291:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
  291 |     if (arma::is_finite(log_wt(i)))
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o bayesImageS.so PottsUtil.o bayesImageS_init.o mcmcPotts.o smcPotts.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp5PdEyK/R.INSTALL274d5031b7191c/bayesImageS/src'
make[1]: Entering directory '/tmp/Rtmp5PdEyK/R.INSTALL274d5031b7191c/bayesImageS/src'
make[1]: Leaving directory '/tmp/Rtmp5PdEyK/R.INSTALL274d5031b7191c/bayesImageS/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-bayesImageS/00new/bayesImageS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (bayesImageS)