- using R Under development (unstable) (2024-12-07 r87428)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-8) 14.2.0
GNU Fortran (Debian 14.2.0-8) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘basket/DESCRIPTION’ ... OK
- this is package ‘basket’ version ‘0.10.11’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘basket’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [10s/15s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) basket-package.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:23-24: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:25-26: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:27-28: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:29-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:33: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) basket-package.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:26-30: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:31-32: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:33-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:35-36: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:38-39: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:41-42: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_map.Rd:43-44: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:26-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:31: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:31-32: Lost braces
31 | \item{[text_color]}{A text string setting the color of the exchangeability
| ^
checkRd: (-1) plot_pep.Rd:33: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:33-34: Lost braces
33 | \item{[tile_color]}{A text string setting the color of the edges of the
| ^
checkRd: (-1) plot_pep.Rd:36-37: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:38: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:39-40: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:41: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:42-43: Lost braces in \itemize; meant \describe ?
checkRd: (-1) plot_pep.Rd:44-45: Lost braces in \itemize; meant \describe ?
checkRd: (-1) vemu.Rd:20: Lost braces; missing escapes or markup?
20 | concluded that nonmelanoma tumor types harboring $BRAF^{V600}$ mutations
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [1s/2s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [57s/70s] OK
Running ‘testthat.R’ [57s/69s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [6s/8s] OK
- checking PDF version of manual ... [4s/5s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE