• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 13:31:59 UTC
• checking for file ‘bamdit/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘bamdit’ version ‘3.6.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘bamdit’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/13s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [1s/2s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0m8FuJ’ ‘~/tmp/scratch/Rtmp1FysC9’   ‘~/tmp/scratch/Rtmp1rMUbL’ ‘~/tmp/scratch/Rtmp1teAFZ’   ‘~/tmp/scratch/Rtmp2Caqep’ ‘~/tmp/scratch/Rtmp3yvCev’   ‘~/tmp/scratch/Rtmp4BOmKb’ ‘~/tmp/scratch/Rtmp4EkJfx’   ‘~/tmp/scratch/Rtmp4FjC75’ ‘~/tmp/scratch/Rtmp4Pxpos’   ‘~/tmp/scratch/Rtmp5JTiLo’ ‘~/tmp/scratch/Rtmp5aJHzp’   ‘~/tmp/scratch/Rtmp5tRO9x’ ‘~/tmp/scratch/Rtmp5xJsDy’   ‘~/tmp/scratch/Rtmp6EuxFW’ ‘~/tmp/scratch/Rtmp6SqTvb’   ‘~/tmp/scratch/Rtmp6SvodA’ ‘~/tmp/scratch/Rtmp6ecshz’   ‘~/tmp/scratch/Rtmp7JsR3f’ ‘~/tmp/scratch/Rtmp7SAiSs’   ‘~/tmp/scratch/Rtmp8UmDeb’ ‘~/tmp/scratch/RtmpA9DFcs’   ‘~/tmp/scratch/RtmpAQNCLo’ ‘~/tmp/scratch/RtmpAcCM6q’   ‘~/tmp/scratch/RtmpAxOuCb’ ‘~/tmp/scratch/RtmpAxdrS7’   ‘~/tmp/scratch/RtmpBHif4y’ ‘~/tmp/scratch/RtmpC4MVGK’   ‘~/tmp/scratch/RtmpCZw4ao’ ‘~/tmp/scratch/RtmpCkb9P4’   ‘~/tmp/scratch/RtmpD44lnT’ ‘~/tmp/scratch/RtmpDarbjJ’   ‘~/tmp/scratch/RtmpDndzja’ ‘~/tmp/scratch/RtmpE6lmg4’   ‘~/tmp/scratch/RtmpETvpOC’ ‘~/tmp/scratch/RtmpElGxNz’   ‘~/tmp/scratch/RtmpEpkhGw’ ‘~/tmp/scratch/RtmpFEh3MJ’   ‘~/tmp/scratch/RtmpGAI3hP’ ‘~/tmp/scratch/RtmpGFnOGt’   ‘~/tmp/scratch/RtmpGHAa5K’ ‘~/tmp/scratch/RtmpGO353i’   ‘~/tmp/scratch/RtmpGQpZdg’ ‘~/tmp/scratch/RtmpGgJvFP’   ‘~/tmp/scratch/RtmpHKzf64’ ‘~/tmp/scratch/RtmpHj3NYV’   ‘~/tmp/scratch/RtmpHjg0Hs’ ‘~/tmp/scratch/RtmpHlpY3U’   ‘~/tmp/scratch/RtmpIaoB4l’ ‘~/tmp/scratch/RtmpIkQOJK’   ‘~/tmp/scratch/RtmpJGfTRC’ ‘~/tmp/scratch/RtmpJI2IyB’   ‘~/tmp/scratch/RtmpKDyxeJ’ ‘~/tmp/scratch/RtmpKEuL0s’   ‘~/tmp/scratch/RtmpKszy5n’ ‘~/tmp/scratch/RtmpLPA1E5’   ‘~/tmp/scratch/RtmpM5qQam’ ‘~/tmp/scratch/RtmpMWwSoV’   ‘~/tmp/scratch/RtmpN4rA3Z’ ‘~/tmp/scratch/RtmpNEjpr3’   ‘~/tmp/scratch/RtmpNHzag9’ ‘~/tmp/scratch/RtmpOMml6R’   ‘~/tmp/scratch/RtmpOcjuna’ ‘~/tmp/scratch/RtmpOfo5Kq’   ‘~/tmp/scratch/RtmpOzLJ1u’ ‘~/tmp/scratch/RtmpP9maPG’   ‘~/tmp/scratch/RtmpRY3M0t’ ‘~/tmp/scratch/RtmpRqlABR’   ‘~/tmp/scratch/RtmpS7uUmY’ ‘~/tmp/scratch/RtmpSEvd59’   ‘~/tmp/scratch/RtmpTH7VqE’ ‘~/tmp/scratch/RtmpTYAvq0’   ‘~/tmp/scratch/RtmpUllJpl’ ‘~/tmp/scratch/RtmpUorKFY’   ‘~/tmp/scratch/RtmpUrqmfG’ ‘~/tmp/scratch/RtmpVFsOfh’   ‘~/tmp/scratch/RtmpVYaVUN’ ‘~/tmp/scratch/RtmpVfdMzH’   ‘~/tmp/scratch/RtmpWbnDjF’ ‘~/tmp/scratch/RtmpWeYdE6’   ‘~/tmp/scratch/RtmpXpLT3X’ ‘~/tmp/scratch/RtmpYWVt03’   ‘~/tmp/scratch/RtmpYwZ8KS’ ‘~/tmp/scratch/RtmpZBUpGt’   ‘~/tmp/scratch/RtmpaBKbQr’ ‘~/tmp/scratch/RtmpaEUmAH’   ‘~/tmp/scratch/RtmpaiyaXm’ ‘~/tmp/scratch/RtmpaxRxVB’   ‘~/tmp/scratch/RtmpbAPATc’ ‘~/tmp/scratch/RtmpbXdH3B’   ‘~/tmp/scratch/Rtmpbmy7nq’ ‘~/tmp/scratch/Rtmpbp2Ccs’   ‘~/tmp/scratch/RtmpcCywFh’ ‘~/tmp/scratch/RtmpcKIrbi’   ‘~/tmp/scratch/RtmpdhxB5E’ ‘~/tmp/scratch/Rtmpdr2bmj’   ‘~/tmp/scratch/RtmpePP6e3’ ‘~/tmp/scratch/RtmpePQKny’   ‘~/tmp/scratch/Rtmpewi7iX’ ‘~/tmp/scratch/RtmpffcTLF’   ‘~/tmp/scratch/RtmpfvtRwM’ ‘~/tmp/scratch/RtmpgNoHmT’   ‘~/tmp/scratch/RtmpgNu8WT’ ‘~/tmp/scratch/RtmpgovuYR’   ‘~/tmp/scratch/RtmphbE3mI’ ‘~/tmp/scratch/RtmphqxSw8’   ‘~/tmp/scratch/RtmpiDQEsf’ ‘~/tmp/scratch/RtmpiUeyLa’   ‘~/tmp/scratch/RtmpjLw1Ok’ ‘~/tmp/scratch/RtmpjakaC4’   ‘~/tmp/scratch/Rtmpjdi1FQ’ ‘~/tmp/scratch/Rtmpkdtkqc’   ‘~/tmp/scratch/RtmpkqCKZ6’ ‘~/tmp/scratch/RtmpkqNl1U’   ‘~/tmp/scratch/Rtmpli1E6w’ ‘~/tmp/scratch/RtmpliTZL2’   ‘~/tmp/scratch/RtmpoJ20un’ ‘~/tmp/scratch/RtmpoRnJmX’   ‘~/tmp/scratch/RtmpovWuaP’ ‘~/tmp/scratch/RtmppOjGOW’   ‘~/tmp/scratch/Rtmppc4wnB’ ‘~/tmp/scratch/RtmppjPAvl’   ‘~/tmp/scratch/RtmppoTHpX’ ‘~/tmp/scratch/RtmpqzhN9j’   ‘~/tmp/scratch/RtmprA9WOt’ ‘~/tmp/scratch/RtmprAQWtk’   ‘~/tmp/scratch/RtmprPLxWV’ ‘~/tmp/scratch/RtmprVnKxB’   ‘~/tmp/scratch/RtmpsJUi3s’ ‘~/tmp/scratch/RtmptpUc0z’   ‘~/tmp/scratch/RtmpuAVYOa’ ‘~/tmp/scratch/RtmpuLWrZY’   ‘~/tmp/scratch/Rtmpuco6Kq’ ‘~/tmp/scratch/Rtmpuuz8JI’   ‘~/tmp/scratch/RtmpvMyaIs’ ‘~/tmp/scratch/RtmpvanjA1’   ‘~/tmp/scratch/Rtmpvv3s6v’ ‘~/tmp/scratch/RtmpwxLwNw’   ‘~/tmp/scratch/Rtmpxk00Wz’ ‘~/tmp/scratch/Rtmpykdy1n’   ‘~/tmp/scratch/RtmpzGeFwg’ ‘~/tmp/scratch/Rtmpzl4kVL’   ‘~/tmp/scratch/xvfb-run.0SxCJe’ ‘~/tmp/scratch/xvfb-run.0twIJ9’   ‘~/tmp/scratch/xvfb-run.3PpK0p’ ‘~/tmp/scratch/xvfb-run.46QE01’   ‘~/tmp/scratch/xvfb-run.4GiPPk’ ‘~/tmp/scratch/xvfb-run.4YHxsA’   ‘~/tmp/scratch/xvfb-run.9Q4vLS’ ‘~/tmp/scratch/xvfb-run.9mzkiR’   ‘~/tmp/scratch/xvfb-run.CDlMTt’ ‘~/tmp/scratch/xvfb-run.D7qPXI’   ‘~/tmp/scratch/xvfb-run.FEXi9l’ ‘~/tmp/scratch/xvfb-run.Ftrv80’   ‘~/tmp/scratch/xvfb-run.G7SPuS’ ‘~/tmp/scratch/xvfb-run.GmvHiE’   ‘~/tmp/scratch/xvfb-run.H4hPMW’ ‘~/tmp/scratch/xvfb-run.IENSXJ’   ‘~/tmp/scratch/xvfb-run.JTP9wt’ ‘~/tmp/scratch/xvfb-run.KgOluu’   ‘~/tmp/scratch/xvfb-run.LiiU5J’ ‘~/tmp/scratch/xvfb-run.MI78Sr’   ‘~/tmp/scratch/xvfb-run.QAoOmM’ ‘~/tmp/scratch/xvfb-run.TBIfVf’   ‘~/tmp/scratch/xvfb-run.Ui7qaV’ ‘~/tmp/scratch/xvfb-run.Wh0dl2’   ‘~/tmp/scratch/xvfb-run.Xz6pmp’ ‘~/tmp/scratch/xvfb-run.Yv3CIJ’   ‘~/tmp/scratch/xvfb-run.atPNfO’ ‘~/tmp/scratch/xvfb-run.czFIEl’   ‘~/tmp/scratch/xvfb-run.dT0DOh’ ‘~/tmp/scratch/xvfb-run.enYf6K’   ‘~/tmp/scratch/xvfb-run.fxnKI0’ ‘~/tmp/scratch/xvfb-run.h8drIB’   ‘~/tmp/scratch/xvfb-run.hN4PZ6’ ‘~/tmp/scratch/xvfb-run.hQSRcb’   ‘~/tmp/scratch/xvfb-run.hdkd03’ ‘~/tmp/scratch/xvfb-run.jp699q’   ‘~/tmp/scratch/xvfb-run.lOrg5M’ ‘~/tmp/scratch/xvfb-run.o9Ix5X’   ‘~/tmp/scratch/xvfb-run.otwBea’ ‘~/tmp/scratch/xvfb-run.ovFF6J’   ‘~/tmp/scratch/xvfb-run.rRfvis’ ‘~/tmp/scratch/xvfb-run.sA0ZL8’   ‘~/tmp/scratch/xvfb-run.uQMnLJ’ ‘~/tmp/scratch/xvfb-run.ulTf8k’   ‘~/tmp/scratch/xvfb-run.vLFy25’ ‘~/tmp/scratch/xvfb-run.vWM94s’   ‘~/tmp/scratch/xvfb-run.yY0b2P’ ‘~/tmp/scratch/xvfb-run.yhtVtn’   ‘~/tmp/scratch/xvfb-run.zjl9jV’
• DONE

Status: 1 NOTE