Install log for 'babelmixr2'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘babelmixr2’ ...
** package ‘babelmixr2’ successfully unpacked and MD5 sums checked
** using staged installation
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
ARMA=`"$(R_HOME)/bin$(R_ARCH_BIN)/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`
RCPP=`"$(R_HOME)/bin$(R_ARCH_BIN)/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`
EG=`"$(R_HOME)/bin$(R_ARCH_BIN)/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`

PKG_LIBS = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)
PKG_CXXFLAGS = -Id -isystem"$(EG)" -isystem"$(RCPP)" -isystem"$(ARMA)"
SHLIB_LDFLAGS = $(SHLIB_CXXLDFLAGS) 
SHLIB_LD = $(SHLIB_CXXLD)

--------[end src/Makevars]--------
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-7) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-7) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEdwKII/R.INSTALL9abc1b6920cb/babelmixr2/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2parse/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Id -isystem"`"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`" -fpic  -g -O2 -Wall -pedantic -mtune=native  -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2parse/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Id -isystem"`"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`" -fpic  -g -O2 -Wall -pedantic -mtune=native  -c classicReverse.cpp -o classicReverse.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2parse/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/rxode2parse/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -Id -isystem"`"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppEigen"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("Rcpp"),"include"))'`" -isystem"`"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/Rscript" -e 'cat(file.path(find.package("RcppArmadillo"),"include"))'`" -fpic  -g -O2 -Wall -pedantic -mtune=native  -c transform.cpp -o transform.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from transform.cpp:12:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: ‘#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed’
  321 |   #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
      |                                                                                      ^
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: ‘#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead’
  326 |     #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
      |                                                                           ^
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: ‘#pragma message: INFO: see the documentation for details’
  329 |   #pragma message ("INFO: see the documentation for details")
      |                                                             ^
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o babelmixr2.so RcppExports.o classicReverse.o init.o transform.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEdwKII/R.INSTALL9abc1b6920cb/babelmixr2/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEdwKII/R.INSTALL9abc1b6920cb/babelmixr2/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEdwKII/R.INSTALL9abc1b6920cb/babelmixr2/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-babelmixr2/00new/babelmixr2/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (babelmixr2)