• using R Under development (unstable) (2026-02-02 r89367)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-12) 15.2.0     GNU Fortran (Debian 15.2.0-12) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-02-03 13:55:54Z
• checking for file ‘auctestr/DESCRIPTION’ ... OK
• this is package ‘auctestr’ version ‘1.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Josh Gardner <jpgard@umich.edu>’ Package CITATION file contains call(s) to old-style personList() or as.personList(). Please use c() on person objects instead. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘auctestr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/6s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] ERROR Running examples in ‘auctestr-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: auc_compare > ### Title: Compare AUC values using the FBH method. > ### Aliases: auc_compare > > ### ** Examples > > ## load sample experiment data > data(sample_experiment_data) > ## compare VariantA of ModelA and ModelB > auc_compare(sample_experiment_data, + compare_values = c('ModelA', 'ModelB'), + filter_value = c('VariantA'), + time_col = 'time', + outcome_col = 'auc', + compare_col = 'model_id', + over_col = 'dataset', + filter_col = 'model_variant') Error: ! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `filter()` instead. ℹ See vignette('programming') for more help Backtrace:     ▆  1. ├─auctestr::auc_compare(...)  2. │ └─... %>% dplyr::filter_(filter_str)  3. └─dplyr::filter_(., filter_str)  4. └─dplyr:::lazy_defunct("filter")  5. └─lifecycle::deprecate_stop(...)  6. └─lifecycle:::deprecate_stop0(msg)  7. └─rlang::cnd_signal(...) Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [1s/2s] ERROR   Running ‘testthat.R’ [1s/2s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(auctestr)   >   > test_check("auctestr")   Saving _problems/test-auc-compare-8.R   [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-auc-compare.R:5:3'): z-score properties are correct ────────────   <lifecycle_error_deprecated/defunctError/rlang_error/error/condition>   Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.   ℹ Please use `filter()` instead.   ℹ See vignette('programming') for more help   Backtrace:        ▆     1. ├─testthat::expect_equal(...) at test-auc-compare.R:5:3     2. │ └─testthat::quasi_label(enquo(object), label)     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. ├─auctestr::auc_compare(...)     5. │ └─... %>% dplyr::filter_(filter_str)     6. └─dplyr::filter_(., filter_str)     7. └─dplyr:::lazy_defunct("filter")     8. └─lifecycle::deprecate_stop(...)     9. └─lifecycle:::deprecate_stop0(msg)    10. └─rlang::cnd_signal(...)      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 10 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘basic-auctestr-vignette.Rmd’ using rmarkdown Quitting from basic-auctestr-vignette.Rmd:38-44 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/lifecycle_error_deprecated> Error: ! `filter_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `filter()` instead. ℹ See vignette('programming') for more help --- Backtrace:     ▆  1. ├─auctestr::auc_compare(...)  2. │ └─... %>% dplyr::filter_(filter_str)  3. └─dplyr::filter_(., filter_str)  4. └─dplyr:::lazy_defunct("filter")  5. └─lifecycle::deprecate_stop(...)  6. └─lifecycle:::deprecate_stop0(msg) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'basic-auctestr-vignette.Rmd' failed with diagnostics: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct. ℹ Please use `filter()` instead. ℹ See vignette('programming') for more help --- failed re-building ‘basic-auctestr-vignette.Rmd’ SUMMARY: processing the following file failed:   ‘basic-auctestr-vignette.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 ERRORs, 1 NOTE