• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 13:27:18 UTC
• checking for file ‘aroma.affymetrix/DESCRIPTION’ ... OK
• this is package ‘aroma.affymetrix’ version ‘3.2.3’
• checking CRAN incoming feasibility ... [3s/5s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘aroma.affymetrix’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [76s/85s] OK
• checking Rd files ... [2s/2s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [17s/19s] OK   Running ‘001.setupExampleData,annotationData.R’ [6s/7s]   Running ‘002.setupExampleData,rawData.R’ [1s/1s]   Running ‘AffymetrixCdfFile.R’ [4s/4s]   Running ‘AffymetrixCelFile.R’ [1s/1s]   Running ‘AffymetrixCelSet.R’ [4s/5s]
• checking PDF version of manual ... [20s/25s] OK
• checking HTML version of manual ... [11s/13s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp079lUa’ ‘~/tmp/scratch/Rtmp0WbjZM’   ‘~/tmp/scratch/Rtmp0ZM6B3’ ‘~/tmp/scratch/Rtmp0aBzcV’   ‘~/tmp/scratch/Rtmp0zpu5Q’ ‘~/tmp/scratch/Rtmp1loDdR’   ‘~/tmp/scratch/Rtmp24bVVd’ ‘~/tmp/scratch/Rtmp2dmKoZ’   ‘~/tmp/scratch/Rtmp308jMM’ ‘~/tmp/scratch/Rtmp3DJFQX’   ‘~/tmp/scratch/Rtmp3mp9nl’ ‘~/tmp/scratch/Rtmp4dJP9l’   ‘~/tmp/scratch/Rtmp4zGZHu’ ‘~/tmp/scratch/Rtmp5BTisy’   ‘~/tmp/scratch/Rtmp6U0Ccw’ ‘~/tmp/scratch/Rtmp6lv28i’   ‘~/tmp/scratch/Rtmp77SbQb’ ‘~/tmp/scratch/Rtmp7aW28Y’   ‘~/tmp/scratch/Rtmp7ncmqL’ ‘~/tmp/scratch/Rtmp8JUqOl’   ‘~/tmp/scratch/Rtmp8PIIe2’ ‘~/tmp/scratch/Rtmp8ddRkb’   ‘~/tmp/scratch/Rtmp8jEPqG’ ‘~/tmp/scratch/Rtmp8k5Rhe’   ‘~/tmp/scratch/Rtmp9oRI97’ ‘~/tmp/scratch/Rtmp9urABw’   ‘~/tmp/scratch/RtmpAP26Tg’ ‘~/tmp/scratch/RtmpBc0Ydi’   ‘~/tmp/scratch/RtmpBfHqlY’ ‘~/tmp/scratch/RtmpBxpSrs’   ‘~/tmp/scratch/RtmpCohKzG’ ‘~/tmp/scratch/RtmpCre4dj’   ‘~/tmp/scratch/RtmpDClI2t’ ‘~/tmp/scratch/RtmpE1MMxu’   ‘~/tmp/scratch/RtmpE7jYN3’ ‘~/tmp/scratch/RtmpEyIu0s’   ‘~/tmp/scratch/RtmpFXUTsL’ ‘~/tmp/scratch/RtmpGZljC7’   ‘~/tmp/scratch/RtmpGoGVni’ ‘~/tmp/scratch/RtmpGuefKf’   ‘~/tmp/scratch/RtmpHiHuZf’ ‘~/tmp/scratch/RtmpHwz8ax’   ‘~/tmp/scratch/RtmpILYldQ’ ‘~/tmp/scratch/RtmpIeVisJ’   ‘~/tmp/scratch/RtmpJ5OBxK’ ‘~/tmp/scratch/RtmpJKTutU’   ‘~/tmp/scratch/RtmpJfZBXY’ ‘~/tmp/scratch/RtmpJrB208’   ‘~/tmp/scratch/RtmpKL7kSt’ ‘~/tmp/scratch/RtmpKLxqHG’   ‘~/tmp/scratch/RtmpLDQwej’ ‘~/tmp/scratch/RtmpLOnSJx’   ‘~/tmp/scratch/RtmpLgpxqy’ ‘~/tmp/scratch/RtmpLrYDuD’   ‘~/tmp/scratch/RtmpMFWs9e’ ‘~/tmp/scratch/RtmpMJuTyx’   ‘~/tmp/scratch/RtmpMy3Wkj’ ‘~/tmp/scratch/RtmpNosZZs’   ‘~/tmp/scratch/RtmpOHHUeK’ ‘~/tmp/scratch/RtmpOY3Mnn’   ‘~/tmp/scratch/RtmpOmCuoL’ ‘~/tmp/scratch/RtmpP5px0V’   ‘~/tmp/scratch/RtmpPG1uA9’ ‘~/tmp/scratch/RtmpPeRo7e’   ‘~/tmp/scratch/RtmpPf31lV’ ‘~/tmp/scratch/RtmpPijjSs’   ‘~/tmp/scratch/RtmpQ3LmCJ’ ‘~/tmp/scratch/RtmpQQMxDi’   ‘~/tmp/scratch/RtmpRNYNCn’ ‘~/tmp/scratch/RtmpRPxY0N’   ‘~/tmp/scratch/RtmpSgxzbZ’ ‘~/tmp/scratch/RtmpTOnyx7’   ‘~/tmp/scratch/RtmpTkloyu’ ‘~/tmp/scratch/RtmpUaUJz1’   ‘~/tmp/scratch/RtmpUmVUsS’ ‘~/tmp/scratch/RtmpUuedpZ’   ‘~/tmp/scratch/RtmpVCgkA8’ ‘~/tmp/scratch/RtmpVnIJk1’   ‘~/tmp/scratch/RtmpW3X971’ ‘~/tmp/scratch/RtmpWUEmPn’   ‘~/tmp/scratch/RtmpXk9emO’ ‘~/tmp/scratch/RtmpY1mFgl’   ‘~/tmp/scratch/RtmpY6b9FV’ ‘~/tmp/scratch/RtmpYcy7Xb’   ‘~/tmp/scratch/RtmpYqEMgH’ ‘~/tmp/scratch/RtmpYvjdik’   ‘~/tmp/scratch/RtmpZ4TRlD’ ‘~/tmp/scratch/RtmpZL21pH’   ‘~/tmp/scratch/RtmpaXRgHi’ ‘~/tmp/scratch/RtmpamPDct’   ‘~/tmp/scratch/Rtmpb0MXV2’ ‘~/tmp/scratch/RtmpbbQgbc’   ‘~/tmp/scratch/RtmpcLHdUt’ ‘~/tmp/scratch/RtmpcT52TB’   ‘~/tmp/scratch/Rtmpd1EJIj’ ‘~/tmp/scratch/RtmpdIS3mN’   ‘~/tmp/scratch/RtmpdqbFAV’ ‘~/tmp/scratch/RtmpdvfKgO’   ‘~/tmp/scratch/Rtmpe11fBG’ ‘~/tmp/scratch/RtmpeN7Vnw’   ‘~/tmp/scratch/Rtmpenqhce’ ‘~/tmp/scratch/Rtmpesi7GD’   ‘~/tmp/scratch/RtmpfYklXo’ ‘~/tmp/scratch/Rtmpfa2pZw’   ‘~/tmp/scratch/Rtmpfd0yU9’ ‘~/tmp/scratch/RtmpfiHi3A’   ‘~/tmp/scratch/RtmpfnGWNW’ ‘~/tmp/scratch/Rtmpg4P9fg’   ‘~/tmp/scratch/RtmpgDDuoS’ ‘~/tmp/scratch/RtmpgsmT6p’   ‘~/tmp/scratch/RtmpgzzFVo’ ‘~/tmp/scratch/RtmphG6IqF’   ‘~/tmp/scratch/RtmphOUtRf’ ‘~/tmp/scratch/RtmpiP6ZNP’   ‘~/tmp/scratch/RtmpiRfiko’ ‘~/tmp/scratch/RtmpitR66t’   ‘~/tmp/scratch/RtmpjW4mUs’ ‘~/tmp/scratch/RtmpjiQBCY’   ‘~/tmp/scratch/RtmpjrVHHP’ ‘~/tmp/scratch/RtmpjyrVfB’   ‘~/tmp/scratch/Rtmpk6zn1c’ ‘~/tmp/scratch/RtmpkBN22B’   ‘~/tmp/scratch/RtmpkRNON3’ ‘~/tmp/scratch/Rtmpkv8qx3’   ‘~/tmp/scratch/RtmpldxEhj’ ‘~/tmp/scratch/RtmplmFm92’   ‘~/tmp/scratch/Rtmplp15iZ’ ‘~/tmp/scratch/RtmplsIv1A’   ‘~/tmp/scratch/RtmpmEvxYv’ ‘~/tmp/scratch/RtmpmctqRg’   ‘~/tmp/scratch/RtmpnN38Dl’ ‘~/tmp/scratch/RtmpnTDE0o’   ‘~/tmp/scratch/Rtmpnplrdn’ ‘~/tmp/scratch/Rtmpo1HqfO’   ‘~/tmp/scratch/RtmpobJ9b4’ ‘~/tmp/scratch/Rtmpofd0I2’   ‘~/tmp/scratch/RtmpoiDMDy’ ‘~/tmp/scratch/RtmppFrv1i’   ‘~/tmp/scratch/Rtmppb81AY’ ‘~/tmp/scratch/Rtmppfessm’   ‘~/tmp/scratch/RtmpqAVvFu’ ‘~/tmp/scratch/RtmpqcBAA3’   ‘~/tmp/scratch/Rtmpqjo0Ef’ ‘~/tmp/scratch/RtmpqovsXn’   ‘~/tmp/scratch/Rtmpqu9VHe’ ‘~/tmp/scratch/RtmpquQs8W’   ‘~/tmp/scratch/Rtmpr3xnTB’ ‘~/tmp/scratch/RtmprIJY8b’   ‘~/tmp/scratch/RtmprXadHm’ ‘~/tmp/scratch/RtmpsF05BV’   ‘~/tmp/scratch/Rtmpsjv97w’ ‘~/tmp/scratch/RtmptFFIpE’   ‘~/tmp/scratch/RtmptSkL7t’ ‘~/tmp/scratch/RtmptaLFrV’   ‘~/tmp/scratch/Rtmpth6SOz’ ‘~/tmp/scratch/RtmptoH8WI’   ‘~/tmp/scratch/Rtmptwa1I8’ ‘~/tmp/scratch/Rtmpup2YnR’   ‘~/tmp/scratch/RtmpuuoNCV’ ‘~/tmp/scratch/RtmpvlnWDK’   ‘~/tmp/scratch/Rtmpwlqx6t’ ‘~/tmp/scratch/Rtmpx9CKYs’   ‘~/tmp/scratch/Rtmpxbbgnq’ ‘~/tmp/scratch/RtmpxpiqM1’   ‘~/tmp/scratch/RtmpyDsF8e’ ‘~/tmp/scratch/RtmpyKsBXE’   ‘~/tmp/scratch/RtmpyXQjO1’ ‘~/tmp/scratch/RtmpzFXv4s’   ‘~/tmp/scratch/xvfb-run.0v9x1T’ ‘~/tmp/scratch/xvfb-run.1c6XaJ’   ‘~/tmp/scratch/xvfb-run.2mS8wx’ ‘~/tmp/scratch/xvfb-run.3QG4HT’   ‘~/tmp/scratch/xvfb-run.3V34JV’ ‘~/tmp/scratch/xvfb-run.3p31Vk’   ‘~/tmp/scratch/xvfb-run.5qT8YS’ ‘~/tmp/scratch/xvfb-run.5t9Gwy’   ‘~/tmp/scratch/xvfb-run.5w38Ex’ ‘~/tmp/scratch/xvfb-run.6RWdwG’   ‘~/tmp/scratch/xvfb-run.8hqFab’ ‘~/tmp/scratch/xvfb-run.A7yuHX’   ‘~/tmp/scratch/xvfb-run.BnipkF’ ‘~/tmp/scratch/xvfb-run.DyscAL’   ‘~/tmp/scratch/xvfb-run.EpvzRq’ ‘~/tmp/scratch/xvfb-run.G8SLyQ’   ‘~/tmp/scratch/xvfb-run.H7vK2d’ ‘~/tmp/scratch/xvfb-run.HSl3xM’   ‘~/tmp/scratch/xvfb-run.IHDE4T’ ‘~/tmp/scratch/xvfb-run.ItG88I’   ‘~/tmp/scratch/xvfb-run.JfO21f’ ‘~/tmp/scratch/xvfb-run.KD9lj2’   ‘~/tmp/scratch/xvfb-run.MEiTrd’ ‘~/tmp/scratch/xvfb-run.MIlmwn’   ‘~/tmp/scratch/xvfb-run.MlErSN’ ‘~/tmp/scratch/xvfb-run.NBw3L2’   ‘~/tmp/scratch/xvfb-run.NnQZSc’ ‘~/tmp/scratch/xvfb-run.Pd3TiL’   ‘~/tmp/scratch/xvfb-run.REUjfu’ ‘~/tmp/scratch/xvfb-run.RW34ri’   ‘~/tmp/scratch/xvfb-run.Rydwtk’ ‘~/tmp/scratch/xvfb-run.SE7sk0’   ‘~/tmp/scratch/xvfb-run.StYvTq’ ‘~/tmp/scratch/xvfb-run.TALACV’   ‘~/tmp/scratch/xvfb-run.TBhAiw’ ‘~/tmp/scratch/xvfb-run.UEnlN4’   ‘~/tmp/scratch/xvfb-run.UFIIng’ ‘~/tmp/scratch/xvfb-run.UVxfdl’   ‘~/tmp/scratch/xvfb-run.WDFeJX’ ‘~/tmp/scratch/xvfb-run.YhNJdV’   ‘~/tmp/scratch/xvfb-run.Yy2idq’ ‘~/tmp/scratch/xvfb-run.YyE5ch’   ‘~/tmp/scratch/xvfb-run.av9Q6d’ ‘~/tmp/scratch/xvfb-run.bqNCVa’   ‘~/tmp/scratch/xvfb-run.dhobxk’ ‘~/tmp/scratch/xvfb-run.dzIwk5’   ‘~/tmp/scratch/xvfb-run.e8bp7j’ ‘~/tmp/scratch/xvfb-run.eQ2EVS’   ‘~/tmp/scratch/xvfb-run.fBCLyP’ ‘~/tmp/scratch/xvfb-run.fEv6fM’   ‘~/tmp/scratch/xvfb-run.fSRZ9I’ ‘~/tmp/scratch/xvfb-run.gjeSQi’   ‘~/tmp/scratch/xvfb-run.gnt8EZ’ ‘~/tmp/scratch/xvfb-run.hgHT1b’   ‘~/tmp/scratch/xvfb-run.iNGND1’ ‘~/tmp/scratch/xvfb-run.iptWpP’   ‘~/tmp/scratch/xvfb-run.klsqAL’ ‘~/tmp/scratch/xvfb-run.knpL7Q’   ‘~/tmp/scratch/xvfb-run.kpNQoV’ ‘~/tmp/scratch/xvfb-run.nbrkXf’   ‘~/tmp/scratch/xvfb-run.ovzgFA’ ‘~/tmp/scratch/xvfb-run.qfrsnt’   ‘~/tmp/scratch/xvfb-run.qiBEQS’ ‘~/tmp/scratch/xvfb-run.quluor’   ‘~/tmp/scratch/xvfb-run.qzz9e5’ ‘~/tmp/scratch/xvfb-run.rE0fk3’   ‘~/tmp/scratch/xvfb-run.sVI4pv’ ‘~/tmp/scratch/xvfb-run.sxj4pH’   ‘~/tmp/scratch/xvfb-run.uYs0mv’ ‘~/tmp/scratch/xvfb-run.uhL01f’   ‘~/tmp/scratch/xvfb-run.vly72m’ ‘~/tmp/scratch/xvfb-run.wJ8ZoC’   ‘~/tmp/scratch/xvfb-run.xPOdsL’ ‘~/tmp/scratch/xvfb-run.y91nXx’   ‘~/tmp/scratch/xvfb-run.z2Lhx9’ ‘~/tmp/scratch/xvfb-run.zU4OLp’
• DONE

Status: 1 NOTE