• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 13:19:52 UTC
• checking for file ‘admixr2/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘admixr2’ version ‘0.2.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘admixr2’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking C++ specification ... INFO   specified C++17
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking whether startup messages can be suppressed ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [24s/27s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [15s/21s] OK   Running ‘testthat.R’ [15s/20s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [84s/111s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp05Cy44’ ‘~/tmp/scratch/Rtmp0FsrsN’   ‘~/tmp/scratch/Rtmp0ZKdE5’ ‘~/tmp/scratch/Rtmp0rIdJ2’   ‘~/tmp/scratch/Rtmp0rtn00’ ‘~/tmp/scratch/Rtmp1llQXn’   ‘~/tmp/scratch/Rtmp1pIQ7T’ ‘~/tmp/scratch/Rtmp2IYqs2’   ‘~/tmp/scratch/Rtmp2KerCU’ ‘~/tmp/scratch/Rtmp2MZtK9’   ‘~/tmp/scratch/Rtmp2VhFhG’ ‘~/tmp/scratch/Rtmp2sDqqZ’   ‘~/tmp/scratch/Rtmp43YzcY’ ‘~/tmp/scratch/Rtmp456G3X’   ‘~/tmp/scratch/Rtmp4J6JEq’ ‘~/tmp/scratch/Rtmp4LvwaK’   ‘~/tmp/scratch/Rtmp4acSYG’ ‘~/tmp/scratch/Rtmp5XbEZd’   ‘~/tmp/scratch/Rtmp5luTOe’ ‘~/tmp/scratch/Rtmp60JMwB’   ‘~/tmp/scratch/Rtmp6c4ODO’ ‘~/tmp/scratch/Rtmp6f0TDM’   ‘~/tmp/scratch/Rtmp6hazrT’ ‘~/tmp/scratch/Rtmp6rTSGF’   ‘~/tmp/scratch/Rtmp7JJsgu’ ‘~/tmp/scratch/Rtmp7u4Iwj’   ‘~/tmp/scratch/Rtmp8Q62B5’ ‘~/tmp/scratch/Rtmp8XfHgx’   ‘~/tmp/scratch/Rtmp8eO6K8’ ‘~/tmp/scratch/Rtmp8oeTcq’   ‘~/tmp/scratch/Rtmp96h3GL’ ‘~/tmp/scratch/RtmpATyp00’   ‘~/tmp/scratch/RtmpAYNCwF’ ‘~/tmp/scratch/RtmpAde4sT’   ‘~/tmp/scratch/RtmpAeS8Tl’ ‘~/tmp/scratch/RtmpAsEtlM’   ‘~/tmp/scratch/RtmpBXnwMu’ ‘~/tmp/scratch/RtmpBgjujA’   ‘~/tmp/scratch/RtmpCVXyZa’ ‘~/tmp/scratch/RtmpCbVVnV’   ‘~/tmp/scratch/RtmpCtTH88’ ‘~/tmp/scratch/RtmpCwveux’   ‘~/tmp/scratch/RtmpDDtZXs’ ‘~/tmp/scratch/RtmpDY62I0’   ‘~/tmp/scratch/RtmpDkBCWJ’ ‘~/tmp/scratch/RtmpE70Svh’   ‘~/tmp/scratch/RtmpEKvDOJ’ ‘~/tmp/scratch/RtmpEVyjYy’   ‘~/tmp/scratch/RtmpEXKZf8’ ‘~/tmp/scratch/RtmpEcGqSP’   ‘~/tmp/scratch/RtmpF6lOTq’ ‘~/tmp/scratch/RtmpFBLBUq’   ‘~/tmp/scratch/RtmpFCDF2z’ ‘~/tmp/scratch/RtmpFPIwkJ’   ‘~/tmp/scratch/RtmpGL1pUt’ ‘~/tmp/scratch/RtmpGOkQTa’   ‘~/tmp/scratch/RtmpGRjRps’ ‘~/tmp/scratch/RtmpGuu2E3’   ‘~/tmp/scratch/RtmpHJObml’ ‘~/tmp/scratch/RtmpHdZk80’   ‘~/tmp/scratch/RtmpI7zR0r’ ‘~/tmp/scratch/RtmpI8asYf’   ‘~/tmp/scratch/RtmpJJNVMQ’ ‘~/tmp/scratch/RtmpJMOj9S’   ‘~/tmp/scratch/RtmpJNmtzE’ ‘~/tmp/scratch/RtmpJWJVkL’   ‘~/tmp/scratch/RtmpJY3eZl’ ‘~/tmp/scratch/RtmpJdgIgZ’   ‘~/tmp/scratch/RtmpJx7RLn’ ‘~/tmp/scratch/RtmpKT1bEG’   ‘~/tmp/scratch/RtmpL1h4VO’ ‘~/tmp/scratch/RtmpL7GdyO’   ‘~/tmp/scratch/RtmpLCqimJ’ ‘~/tmp/scratch/RtmpLFd6dn’   ‘~/tmp/scratch/RtmpLgODo1’ ‘~/tmp/scratch/RtmpMS6BKl’   ‘~/tmp/scratch/RtmpN8O3gj’ ‘~/tmp/scratch/RtmpNGLYZn’   ‘~/tmp/scratch/RtmpNo1lko’ ‘~/tmp/scratch/RtmpNsZzAF’   ‘~/tmp/scratch/RtmpO7rjdc’ ‘~/tmp/scratch/RtmpO8iAgV’   ‘~/tmp/scratch/RtmpOyBo7b’ ‘~/tmp/scratch/RtmpPvULh9’   ‘~/tmp/scratch/RtmpR9AJC7’ ‘~/tmp/scratch/RtmpSQkAP6’   ‘~/tmp/scratch/RtmpSrQJpv’ ‘~/tmp/scratch/RtmpTNLyKS’   ‘~/tmp/scratch/RtmpTOYnYc’ ‘~/tmp/scratch/RtmpTuDMg7’   ‘~/tmp/scratch/RtmpTv5PyF’ ‘~/tmp/scratch/RtmpTwlo11’   ‘~/tmp/scratch/RtmpVe7fnN’ ‘~/tmp/scratch/RtmpVwoBa9’   ‘~/tmp/scratch/RtmpW6O5P7’ ‘~/tmp/scratch/RtmpWOgSik’   ‘~/tmp/scratch/RtmpWZgC8X’ ‘~/tmp/scratch/RtmpWmjfCP’   ‘~/tmp/scratch/RtmpWqM7X4’ ‘~/tmp/scratch/RtmpX0AKPp’   ‘~/tmp/scratch/RtmpXiuJGX’ ‘~/tmp/scratch/RtmpY4Xp3X’   ‘~/tmp/scratch/RtmpYGQPFj’ ‘~/tmp/scratch/RtmpZERjH4’   ‘~/tmp/scratch/RtmpaDujjF’ ‘~/tmp/scratch/RtmpaghGV1’   ‘~/tmp/scratch/RtmpcetQLg’ ‘~/tmp/scratch/RtmpctsybR’   ‘~/tmp/scratch/Rtmpd39Ga9’ ‘~/tmp/scratch/Rtmpd9CrvR’   ‘~/tmp/scratch/Rtmpe0pXuL’ ‘~/tmp/scratch/Rtmpf6Y2bo’   ‘~/tmp/scratch/RtmpfSO17F’ ‘~/tmp/scratch/RtmpftK5NI’   ‘~/tmp/scratch/RtmphERacP’ ‘~/tmp/scratch/RtmpiA5tL5’   ‘~/tmp/scratch/RtmpinCamE’ ‘~/tmp/scratch/RtmpjEQvpq’   ‘~/tmp/scratch/RtmpjoF1Q5’ ‘~/tmp/scratch/RtmplNUyPA’   ‘~/tmp/scratch/RtmpmCrDdn’ ‘~/tmp/scratch/RtmpmDR0I0’   ‘~/tmp/scratch/RtmpmLZeET’ ‘~/tmp/scratch/RtmpmyIEjn’   ‘~/tmp/scratch/RtmpnSdU3e’ ‘~/tmp/scratch/RtmpnuAAb8’   ‘~/tmp/scratch/RtmpoL9hKk’ ‘~/tmp/scratch/RtmpoR4NhA’   ‘~/tmp/scratch/RtmpoXYxSr’ ‘~/tmp/scratch/RtmpozlU3v’   ‘~/tmp/scratch/RtmppffL8C’ ‘~/tmp/scratch/RtmppgWzA7’   ‘~/tmp/scratch/Rtmpq11RDs’ ‘~/tmp/scratch/Rtmpq5CP02’   ‘~/tmp/scratch/RtmpqBqy03’ ‘~/tmp/scratch/RtmpqR84F9’   ‘~/tmp/scratch/Rtmpqn8R8c’ ‘~/tmp/scratch/Rtmpr9JQ6x’   ‘~/tmp/scratch/RtmprDnkrG’ ‘~/tmp/scratch/Rtmprvknva’   ‘~/tmp/scratch/RtmpsH4vAm’ ‘~/tmp/scratch/Rtmpt2gEMb’   ‘~/tmp/scratch/Rtmpt3Mcsn’ ‘~/tmp/scratch/Rtmpt9JTxx’   ‘~/tmp/scratch/RtmptZgMR8’ ‘~/tmp/scratch/RtmptldcSR’   ‘~/tmp/scratch/Rtmpunu0CV’ ‘~/tmp/scratch/RtmpvH4JOw’   ‘~/tmp/scratch/RtmpvP7rjA’ ‘~/tmp/scratch/RtmpvQjKaG’   ‘~/tmp/scratch/RtmpvelQp5’ ‘~/tmp/scratch/RtmpvudJaI’   ‘~/tmp/scratch/RtmpvviccD’ ‘~/tmp/scratch/RtmpwL5idy’   ‘~/tmp/scratch/RtmpwmHtQk’ ‘~/tmp/scratch/Rtmpwoy5z2’   ‘~/tmp/scratch/RtmpxRMwyy’ ‘~/tmp/scratch/RtmpxVL46j’   ‘~/tmp/scratch/Rtmpxeq0fE’ ‘~/tmp/scratch/RtmpxgVos7’   ‘~/tmp/scratch/RtmpxjEPuv’ ‘~/tmp/scratch/RtmpxprRxC’   ‘~/tmp/scratch/RtmpyMn5vl’ ‘~/tmp/scratch/Rtmpz0Zgrp’   ‘~/tmp/scratch/Rtmpz336WP’ ‘~/tmp/scratch/Rtmpza2ljQ’   ‘~/tmp/scratch/quarto-sessionf05fb9f20a1cdbe6’   ‘~/tmp/scratch/xvfb-run.0Mqqw8’ ‘~/tmp/scratch/xvfb-run.0OsXGT’   ‘~/tmp/scratch/xvfb-run.0XIg6v’ ‘~/tmp/scratch/xvfb-run.0jRqhA’   ‘~/tmp/scratch/xvfb-run.10my2N’ ‘~/tmp/scratch/xvfb-run.1oQKLU’   ‘~/tmp/scratch/xvfb-run.1rpSkY’ ‘~/tmp/scratch/xvfb-run.2bnzEj’   ‘~/tmp/scratch/xvfb-run.32zcFI’ ‘~/tmp/scratch/xvfb-run.363xxH’   ‘~/tmp/scratch/xvfb-run.3BoNMm’ ‘~/tmp/scratch/xvfb-run.3M6INb’   ‘~/tmp/scratch/xvfb-run.3sNZzH’ ‘~/tmp/scratch/xvfb-run.4ymQWT’   ‘~/tmp/scratch/xvfb-run.55SbIg’ ‘~/tmp/scratch/xvfb-run.6PCbVZ’   ‘~/tmp/scratch/xvfb-run.6nNafC’ ‘~/tmp/scratch/xvfb-run.8WZ0Ti’   ‘~/tmp/scratch/xvfb-run.ADo0zW’ ‘~/tmp/scratch/xvfb-run.AOIvRB’   ‘~/tmp/scratch/xvfb-run.AZOIeo’ ‘~/tmp/scratch/xvfb-run.AsPjUU’   ‘~/tmp/scratch/xvfb-run.BsnGXk’ ‘~/tmp/scratch/xvfb-run.CW5OhY’   ‘~/tmp/scratch/xvfb-run.DcAmnj’ ‘~/tmp/scratch/xvfb-run.F5p8IM’   ‘~/tmp/scratch/xvfb-run.Jo7zKy’ ‘~/tmp/scratch/xvfb-run.K2rRXw’   ‘~/tmp/scratch/xvfb-run.Kbdvq9’ ‘~/tmp/scratch/xvfb-run.KhIQEW’   ‘~/tmp/scratch/xvfb-run.KoCcI4’ ‘~/tmp/scratch/xvfb-run.Lwwx88’   ‘~/tmp/scratch/xvfb-run.MogHId’ ‘~/tmp/scratch/xvfb-run.NHknhG’   ‘~/tmp/scratch/xvfb-run.NtMgrP’ ‘~/tmp/scratch/xvfb-run.OtHZ6K’   ‘~/tmp/scratch/xvfb-run.QDrG41’ ‘~/tmp/scratch/xvfb-run.QgUUbp’   ‘~/tmp/scratch/xvfb-run.RCBuWC’ ‘~/tmp/scratch/xvfb-run.U2zaG6’   ‘~/tmp/scratch/xvfb-run.UkFFIP’ ‘~/tmp/scratch/xvfb-run.W0pMuX’   ‘~/tmp/scratch/xvfb-run.WKNow6’ ‘~/tmp/scratch/xvfb-run.WhHNHG’   ‘~/tmp/scratch/xvfb-run.Y28oCT’ ‘~/tmp/scratch/xvfb-run.YQi2ox’   ‘~/tmp/scratch/xvfb-run.Yra80P’ ‘~/tmp/scratch/xvfb-run.bMS0Cf’   ‘~/tmp/scratch/xvfb-run.dJnNtE’ ‘~/tmp/scratch/xvfb-run.dg7D1u’   ‘~/tmp/scratch/xvfb-run.djZL8K’ ‘~/tmp/scratch/xvfb-run.e9Mlwe’   ‘~/tmp/scratch/xvfb-run.ebzui5’ ‘~/tmp/scratch/xvfb-run.fRIwvz’   ‘~/tmp/scratch/xvfb-run.fTzkhB’ ‘~/tmp/scratch/xvfb-run.fqYQ9s’   ‘~/tmp/scratch/xvfb-run.hafayX’ ‘~/tmp/scratch/xvfb-run.htOlMx’   ‘~/tmp/scratch/xvfb-run.iRugMJ’ ‘~/tmp/scratch/xvfb-run.iSoRyN’   ‘~/tmp/scratch/xvfb-run.iolm8s’ ‘~/tmp/scratch/xvfb-run.ir0HlI’   ‘~/tmp/scratch/xvfb-run.itOobX’ ‘~/tmp/scratch/xvfb-run.jkBkLq’   ‘~/tmp/scratch/xvfb-run.k90xXE’ ‘~/tmp/scratch/xvfb-run.l3OfdC’   ‘~/tmp/scratch/xvfb-run.l4veMC’ ‘~/tmp/scratch/xvfb-run.nufP1Q’   ‘~/tmp/scratch/xvfb-run.oOUUAf’ ‘~/tmp/scratch/xvfb-run.pAPZ3w’   ‘~/tmp/scratch/xvfb-run.pdHGQG’ ‘~/tmp/scratch/xvfb-run.tDINkl’   ‘~/tmp/scratch/xvfb-run.vxAUYq’ ‘~/tmp/scratch/xvfb-run.wPbizB’   ‘~/tmp/scratch/xvfb-run.wQxq1P’ ‘~/tmp/scratch/xvfb-run.x2OjmU’   ‘~/tmp/scratch/xvfb-run.xaM8nq’
• DONE

Status: 1 NOTE