• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 13:16:50 UTC
• checking for file ‘abc/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘abc’ version ‘2.2.2’
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘abc’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/14s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [15s/20s] OK Examples with CPU (user + system) or elapsed time > 5s          user system elapsed gfitpca 4.396 0.012 5.642
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [88s/114s] OK
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0MaO52’ ‘~/tmp/scratch/Rtmp0PSfmu’   ‘~/tmp/scratch/Rtmp0Z48N3’ ‘~/tmp/scratch/Rtmp0s9DAM’   ‘~/tmp/scratch/Rtmp1IxYi6’ ‘~/tmp/scratch/Rtmp1KjYSN’   ‘~/tmp/scratch/Rtmp1XnkQL’ ‘~/tmp/scratch/Rtmp1dfZl1’   ‘~/tmp/scratch/Rtmp2pXdZx’ ‘~/tmp/scratch/Rtmp2w6rxH’   ‘~/tmp/scratch/Rtmp32m8o0’ ‘~/tmp/scratch/Rtmp33tPE9’   ‘~/tmp/scratch/Rtmp3Vntvs’ ‘~/tmp/scratch/Rtmp3d1cS4’   ‘~/tmp/scratch/Rtmp3js2vd’ ‘~/tmp/scratch/Rtmp4lISWQ’   ‘~/tmp/scratch/Rtmp4sGvGn’ ‘~/tmp/scratch/Rtmp51MV84’   ‘~/tmp/scratch/Rtmp59XP9d’ ‘~/tmp/scratch/Rtmp5JZUJL’   ‘~/tmp/scratch/Rtmp5Pir6S’ ‘~/tmp/scratch/Rtmp6391XT’   ‘~/tmp/scratch/Rtmp6jQd4O’ ‘~/tmp/scratch/Rtmp7G1siP’   ‘~/tmp/scratch/Rtmp7ICDf4’ ‘~/tmp/scratch/Rtmp7bEWUU’   ‘~/tmp/scratch/Rtmp81Uk75’ ‘~/tmp/scratch/Rtmp88om5k’   ‘~/tmp/scratch/Rtmp8YjthG’ ‘~/tmp/scratch/Rtmp8h0yaR’   ‘~/tmp/scratch/Rtmp9I0Wm3’ ‘~/tmp/scratch/Rtmp9ftOnj’   ‘~/tmp/scratch/RtmpA35tMP’ ‘~/tmp/scratch/RtmpAEG6bo’   ‘~/tmp/scratch/RtmpAp7Rv8’ ‘~/tmp/scratch/RtmpAuibCq’   ‘~/tmp/scratch/RtmpAwjTk0’ ‘~/tmp/scratch/RtmpBMD9qG’   ‘~/tmp/scratch/RtmpBX7xbM’ ‘~/tmp/scratch/RtmpBaYp1k’   ‘~/tmp/scratch/RtmpBor3c6’ ‘~/tmp/scratch/RtmpCJ7fZp’   ‘~/tmp/scratch/RtmpCWMPiQ’ ‘~/tmp/scratch/RtmpDHF46U’   ‘~/tmp/scratch/RtmpDYbps7’ ‘~/tmp/scratch/RtmpEKUzNa’   ‘~/tmp/scratch/RtmpETOFFo’ ‘~/tmp/scratch/RtmpFSVfPm’   ‘~/tmp/scratch/RtmpH8TcOF’ ‘~/tmp/scratch/RtmpHlFdQL’   ‘~/tmp/scratch/RtmpI0iosb’ ‘~/tmp/scratch/RtmpI5eeN2’   ‘~/tmp/scratch/RtmpI5glku’ ‘~/tmp/scratch/RtmpIGDRK2’   ‘~/tmp/scratch/RtmpIhNKvU’ ‘~/tmp/scratch/RtmpInpLJK’   ‘~/tmp/scratch/RtmpIxTOwY’ ‘~/tmp/scratch/RtmpJBVCot’   ‘~/tmp/scratch/RtmpJf86k6’ ‘~/tmp/scratch/RtmpKiVPn5’   ‘~/tmp/scratch/RtmpL2Hcjv’ ‘~/tmp/scratch/RtmpL7Jp6l’   ‘~/tmp/scratch/RtmpLF1yDq’ ‘~/tmp/scratch/RtmpLRw0DM’   ‘~/tmp/scratch/RtmpLfDEzY’ ‘~/tmp/scratch/RtmpMu3LTT’   ‘~/tmp/scratch/RtmpN2AzVm’ ‘~/tmp/scratch/RtmpN6z5NP’   ‘~/tmp/scratch/RtmpNJhP8x’ ‘~/tmp/scratch/RtmpNRUYBL’   ‘~/tmp/scratch/RtmpNb7cVP’ ‘~/tmp/scratch/RtmpNf3WAb’   ‘~/tmp/scratch/RtmpNmWtHm’ ‘~/tmp/scratch/RtmpOoOtaw’   ‘~/tmp/scratch/RtmpOwJUZ0’ ‘~/tmp/scratch/RtmpP2ClvH’   ‘~/tmp/scratch/RtmpPbidUM’ ‘~/tmp/scratch/RtmpPjJErp’   ‘~/tmp/scratch/RtmpQ5ikiC’ ‘~/tmp/scratch/RtmpRJrbF7’   ‘~/tmp/scratch/RtmpRoZj19’ ‘~/tmp/scratch/RtmpRx5AHO’   ‘~/tmp/scratch/RtmpSDCBhx’ ‘~/tmp/scratch/RtmpSZNvLU’   ‘~/tmp/scratch/RtmpSxjZIs’ ‘~/tmp/scratch/RtmpTPesnr’   ‘~/tmp/scratch/RtmpTSKauR’ ‘~/tmp/scratch/RtmpUDd3k9’   ‘~/tmp/scratch/RtmpUy6BW8’ ‘~/tmp/scratch/RtmpVLUxCP’   ‘~/tmp/scratch/RtmpVbdSkN’ ‘~/tmp/scratch/RtmpVcIzR1’   ‘~/tmp/scratch/RtmpW1VEG1’ ‘~/tmp/scratch/RtmpW50LAj’   ‘~/tmp/scratch/RtmpW5ETbW’ ‘~/tmp/scratch/RtmpWxRtQU’   ‘~/tmp/scratch/RtmpX8i2Tw’ ‘~/tmp/scratch/RtmpX9IRx2’   ‘~/tmp/scratch/RtmpaP5yzx’ ‘~/tmp/scratch/RtmpaWdlHm’   ‘~/tmp/scratch/RtmpahGcW0’ ‘~/tmp/scratch/RtmpavnGxJ’   ‘~/tmp/scratch/RtmpavtYYy’ ‘~/tmp/scratch/RtmpbAWmTN’   ‘~/tmp/scratch/Rtmpbl4bB8’ ‘~/tmp/scratch/Rtmpbo5fDC’   ‘~/tmp/scratch/RtmpciGPIW’ ‘~/tmp/scratch/Rtmpcl8wnh’   ‘~/tmp/scratch/RtmpczYJ9y’ ‘~/tmp/scratch/RtmpdYV9O2’   ‘~/tmp/scratch/RtmpdZNbuL’ ‘~/tmp/scratch/Rtmpf2jmwg’   ‘~/tmp/scratch/RtmpfA40NX’ ‘~/tmp/scratch/RtmpfEFt7A’   ‘~/tmp/scratch/RtmpgCgVgL’ ‘~/tmp/scratch/RtmpglpexR’   ‘~/tmp/scratch/RtmphQan2T’ ‘~/tmp/scratch/RtmphRouyr’   ‘~/tmp/scratch/RtmphkZCO3’ ‘~/tmp/scratch/RtmphrvHun’   ‘~/tmp/scratch/Rtmpi5fNXU’ ‘~/tmp/scratch/Rtmpi8qFGV’   ‘~/tmp/scratch/RtmpiC7HLd’ ‘~/tmp/scratch/RtmpiG1jY4’   ‘~/tmp/scratch/RtmpiNXDAA’ ‘~/tmp/scratch/Rtmpii7urv’   ‘~/tmp/scratch/Rtmpj6OYcJ’ ‘~/tmp/scratch/RtmpjKk9oC’   ‘~/tmp/scratch/RtmpjxWDqK’ ‘~/tmp/scratch/RtmpkDzi72’   ‘~/tmp/scratch/RtmpkqDx6u’ ‘~/tmp/scratch/RtmpkrPEZ1’   ‘~/tmp/scratch/Rtmpl4ZGxd’ ‘~/tmp/scratch/RtmplHWi3F’   ‘~/tmp/scratch/RtmplcVP9z’ ‘~/tmp/scratch/RtmplexpCf’   ‘~/tmp/scratch/Rtmpljl1mm’ ‘~/tmp/scratch/RtmplykRwy’   ‘~/tmp/scratch/Rtmpm3NOcN’ ‘~/tmp/scratch/RtmpmN1Pu9’   ‘~/tmp/scratch/RtmpmQ5pG4’ ‘~/tmp/scratch/RtmpmhoEOi’   ‘~/tmp/scratch/Rtmpn76IMU’ ‘~/tmp/scratch/RtmpnRadI3’   ‘~/tmp/scratch/Rtmpnwo05D’ ‘~/tmp/scratch/Rtmpp9ecY8’   ‘~/tmp/scratch/RtmpqIDB94’ ‘~/tmp/scratch/Rtmpqtkqbz’   ‘~/tmp/scratch/RtmprW1ILf’ ‘~/tmp/scratch/Rtmps6a3kI’   ‘~/tmp/scratch/RtmptCoL90’ ‘~/tmp/scratch/RtmptlCPM4’   ‘~/tmp/scratch/Rtmpu7myqQ’ ‘~/tmp/scratch/RtmpulF59L’   ‘~/tmp/scratch/Rtmpvez4o1’ ‘~/tmp/scratch/RtmpvrYEg4’   ‘~/tmp/scratch/RtmpwEVzKD’ ‘~/tmp/scratch/RtmpwGooSk’   ‘~/tmp/scratch/RtmpwweB2p’ ‘~/tmp/scratch/Rtmpwy7Vp0’   ‘~/tmp/scratch/Rtmpx17MEp’ ‘~/tmp/scratch/Rtmpx8C9yq’   ‘~/tmp/scratch/RtmpxXyCtp’ ‘~/tmp/scratch/RtmpxY87zi’   ‘~/tmp/scratch/RtmpxfoLgt’ ‘~/tmp/scratch/RtmpxqMLLX’   ‘~/tmp/scratch/RtmpyR2xoD’ ‘~/tmp/scratch/RtmpyymARI’   ‘~/tmp/scratch/Rtmpz7Dmib’ ‘~/tmp/scratch/xvfb-run.2MQ5Oc’   ‘~/tmp/scratch/xvfb-run.32d36K’ ‘~/tmp/scratch/xvfb-run.361XPg’   ‘~/tmp/scratch/xvfb-run.38hqYU’ ‘~/tmp/scratch/xvfb-run.3NiEjX’   ‘~/tmp/scratch/xvfb-run.5nGAi4’ ‘~/tmp/scratch/xvfb-run.6h8zs2’   ‘~/tmp/scratch/xvfb-run.8YKdIc’ ‘~/tmp/scratch/xvfb-run.8d4Ph2’   ‘~/tmp/scratch/xvfb-run.97xvDW’ ‘~/tmp/scratch/xvfb-run.9Ahsao’   ‘~/tmp/scratch/xvfb-run.CKW3cC’ ‘~/tmp/scratch/xvfb-run.CkGNKs’   ‘~/tmp/scratch/xvfb-run.E515va’ ‘~/tmp/scratch/xvfb-run.FcmjL2’   ‘~/tmp/scratch/xvfb-run.GFxuwq’ ‘~/tmp/scratch/xvfb-run.GK7IJP’   ‘~/tmp/scratch/xvfb-run.I09EOU’ ‘~/tmp/scratch/xvfb-run.JuQvGV’   ‘~/tmp/scratch/xvfb-run.KVe49G’ ‘~/tmp/scratch/xvfb-run.KvItu8’   ‘~/tmp/scratch/xvfb-run.M8flBa’ ‘~/tmp/scratch/xvfb-run.McR4i3’   ‘~/tmp/scratch/xvfb-run.NO4iNZ’ ‘~/tmp/scratch/xvfb-run.NhSHw5’   ‘~/tmp/scratch/xvfb-run.P52T7k’ ‘~/tmp/scratch/xvfb-run.PCOHig’   ‘~/tmp/scratch/xvfb-run.SGF5IS’ ‘~/tmp/scratch/xvfb-run.SlzVje’   ‘~/tmp/scratch/xvfb-run.VD8Xs2’ ‘~/tmp/scratch/xvfb-run.Vn0VLU’   ‘~/tmp/scratch/xvfb-run.W7E2tj’ ‘~/tmp/scratch/xvfb-run.WPtAZt’   ‘~/tmp/scratch/xvfb-run.Wmo9hi’ ‘~/tmp/scratch/xvfb-run.XHxrgd’   ‘~/tmp/scratch/xvfb-run.YQKJ2q’ ‘~/tmp/scratch/xvfb-run.awR9Jw’   ‘~/tmp/scratch/xvfb-run.bJDYdL’ ‘~/tmp/scratch/xvfb-run.cRf2R3’   ‘~/tmp/scratch/xvfb-run.d7DTjN’ ‘~/tmp/scratch/xvfb-run.dV9uSi’   ‘~/tmp/scratch/xvfb-run.dewIkW’ ‘~/tmp/scratch/xvfb-run.ePUAAd’   ‘~/tmp/scratch/xvfb-run.fQ10Ti’ ‘~/tmp/scratch/xvfb-run.fj1m2d’   ‘~/tmp/scratch/xvfb-run.gJb6MZ’ ‘~/tmp/scratch/xvfb-run.h5JwdN’   ‘~/tmp/scratch/xvfb-run.h7f7rJ’ ‘~/tmp/scratch/xvfb-run.hJldxO’   ‘~/tmp/scratch/xvfb-run.hOFlWz’ ‘~/tmp/scratch/xvfb-run.i7eOO2’   ‘~/tmp/scratch/xvfb-run.iZTATX’ ‘~/tmp/scratch/xvfb-run.it9Oun’   ‘~/tmp/scratch/xvfb-run.lRsKSj’ ‘~/tmp/scratch/xvfb-run.lnpdet’   ‘~/tmp/scratch/xvfb-run.m3Pcdj’ ‘~/tmp/scratch/xvfb-run.mNozaM’   ‘~/tmp/scratch/xvfb-run.mSAHEh’ ‘~/tmp/scratch/xvfb-run.p4XZEG’   ‘~/tmp/scratch/xvfb-run.pCFfVr’ ‘~/tmp/scratch/xvfb-run.pHbLpf’   ‘~/tmp/scratch/xvfb-run.q9nuqL’ ‘~/tmp/scratch/xvfb-run.qMb9ZL’   ‘~/tmp/scratch/xvfb-run.r5NDoN’ ‘~/tmp/scratch/xvfb-run.rY4YlK’   ‘~/tmp/scratch/xvfb-run.s9xZMR’ ‘~/tmp/scratch/xvfb-run.sCABZG’   ‘~/tmp/scratch/xvfb-run.tOoXuX’ ‘~/tmp/scratch/xvfb-run.vN9lyU’   ‘~/tmp/scratch/xvfb-run.vTEMLr’ ‘~/tmp/scratch/xvfb-run.wtbafP’   ‘~/tmp/scratch/xvfb-run.y2KDgO’ ‘~/tmp/scratch/xvfb-run.ygtsLw’   ‘~/tmp/scratch/xvfb-run.zAWZu5’ ‘~/tmp/scratch/xvfb-run.zIcJsz’   ‘~/tmp/scratch/xvfb-run.zTwbxK’
• DONE

Status: 1 NOTE