• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 13:16:42 UTC
• checking for file ‘aPCoA/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘aPCoA’ version ‘1.3’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Yushu Shi <shiyushu2006@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: person(given = "Yushu",                     family = "Shi",                     role = c("aut", "cre"),                     email = "shiyushu2006@gmail.com") as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘aPCoA’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/13s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [2s/2s] OK
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0BXWcB’ ‘~/tmp/scratch/Rtmp0QSO60’   ‘~/tmp/scratch/Rtmp1XGiZD’ ‘~/tmp/scratch/Rtmp1qNvA5’   ‘~/tmp/scratch/Rtmp2vz9uT’ ‘~/tmp/scratch/Rtmp34Q5QQ’   ‘~/tmp/scratch/Rtmp3YuAAl’ ‘~/tmp/scratch/Rtmp3cKRne’   ‘~/tmp/scratch/Rtmp3sp53V’ ‘~/tmp/scratch/Rtmp6pZRp2’   ‘~/tmp/scratch/Rtmp6zqnO3’ ‘~/tmp/scratch/Rtmp7Oyqth’   ‘~/tmp/scratch/Rtmp7ypAde’ ‘~/tmp/scratch/Rtmp8BlZSJ’   ‘~/tmp/scratch/Rtmp8y29pJ’ ‘~/tmp/scratch/Rtmp9D7sC6’   ‘~/tmp/scratch/Rtmp9fOeyu’ ‘~/tmp/scratch/RtmpA6eUOF’   ‘~/tmp/scratch/RtmpAkbawA’ ‘~/tmp/scratch/RtmpB9PTAo’   ‘~/tmp/scratch/RtmpC3fI7G’ ‘~/tmp/scratch/RtmpDHF46U’   ‘~/tmp/scratch/RtmpDs1Cgq’ ‘~/tmp/scratch/RtmpDzZthM’   ‘~/tmp/scratch/RtmpE7DN1a’ ‘~/tmp/scratch/RtmpEAyvFq’   ‘~/tmp/scratch/RtmpECgO83’ ‘~/tmp/scratch/RtmpETuIIh’   ‘~/tmp/scratch/RtmpEhyu91’ ‘~/tmp/scratch/RtmpFiYHxm’   ‘~/tmp/scratch/RtmpHDP03s’ ‘~/tmp/scratch/RtmpHMfFO2’   ‘~/tmp/scratch/RtmpI1SkDS’ ‘~/tmp/scratch/RtmpIMvy9d’   ‘~/tmp/scratch/RtmpJ7GPV9’ ‘~/tmp/scratch/RtmpJCiack’   ‘~/tmp/scratch/RtmpJFGVLg’ ‘~/tmp/scratch/RtmpJIn8Fl’   ‘~/tmp/scratch/RtmpJpDgS1’ ‘~/tmp/scratch/RtmpKGhPt4’   ‘~/tmp/scratch/RtmpLrJf0D’ ‘~/tmp/scratch/RtmpMPejyq’   ‘~/tmp/scratch/RtmpNJhP8x’ ‘~/tmp/scratch/RtmpOkmAyQ’   ‘~/tmp/scratch/RtmpPplzxC’ ‘~/tmp/scratch/RtmpPv7JMy’   ‘~/tmp/scratch/RtmpQPNZBJ’ ‘~/tmp/scratch/RtmpR7y3Am’   ‘~/tmp/scratch/RtmpREj7Gh’ ‘~/tmp/scratch/RtmpRMHqZF’   ‘~/tmp/scratch/RtmpRPMVWd’ ‘~/tmp/scratch/RtmpRbn6GI’   ‘~/tmp/scratch/RtmpRs6T8k’ ‘~/tmp/scratch/RtmpRzFw55’   ‘~/tmp/scratch/RtmpSuc3kn’ ‘~/tmp/scratch/RtmpTeLq1s’   ‘~/tmp/scratch/RtmpTgXDqO’ ‘~/tmp/scratch/RtmpUWBDzJ’   ‘~/tmp/scratch/RtmpUhIT87’ ‘~/tmp/scratch/RtmpUrVgRM’   ‘~/tmp/scratch/RtmpUwUEr4’ ‘~/tmp/scratch/RtmpV647nb’   ‘~/tmp/scratch/RtmpV9xr8K’ ‘~/tmp/scratch/RtmpWC5pAq’   ‘~/tmp/scratch/RtmpWSQcJV’ ‘~/tmp/scratch/RtmpWbuQ9s’   ‘~/tmp/scratch/RtmpWniOVV’ ‘~/tmp/scratch/RtmpX5upqJ’   ‘~/tmp/scratch/RtmpXZO00G’ ‘~/tmp/scratch/RtmpY6Tr4e’   ‘~/tmp/scratch/RtmpYAh6iF’ ‘~/tmp/scratch/RtmpYnyuw0’   ‘~/tmp/scratch/RtmpZNMVk5’ ‘~/tmp/scratch/RtmpZVGGG1’   ‘~/tmp/scratch/RtmpajwuyG’ ‘~/tmp/scratch/Rtmpb7hIUp’   ‘~/tmp/scratch/RtmpbKYnyK’ ‘~/tmp/scratch/Rtmpbqi39I’   ‘~/tmp/scratch/Rtmpc91gtj’ ‘~/tmp/scratch/Rtmpc9g26X’   ‘~/tmp/scratch/RtmpdrRBEg’ ‘~/tmp/scratch/Rtmpg2zdbJ’   ‘~/tmp/scratch/Rtmph6NqRY’ ‘~/tmp/scratch/Rtmph6h18y’   ‘~/tmp/scratch/Rtmph7DkZV’ ‘~/tmp/scratch/RtmphCZLav’   ‘~/tmp/scratch/RtmphCyLhw’ ‘~/tmp/scratch/RtmphS6yQ4’   ‘~/tmp/scratch/RtmphqLQ1O’ ‘~/tmp/scratch/RtmphqmDYb’   ‘~/tmp/scratch/RtmpivLBN9’ ‘~/tmp/scratch/Rtmpj2z8yQ’   ‘~/tmp/scratch/Rtmpj3mkcS’ ‘~/tmp/scratch/RtmpjA1kAA’   ‘~/tmp/scratch/RtmpjRxftD’ ‘~/tmp/scratch/RtmpkDzi72’   ‘~/tmp/scratch/RtmpklY1CK’ ‘~/tmp/scratch/Rtmpkqny7Z’   ‘~/tmp/scratch/Rtmpl3CaXx’ ‘~/tmp/scratch/Rtmpl4ZGxd’   ‘~/tmp/scratch/RtmplECErL’ ‘~/tmp/scratch/RtmplcVP9z’   ‘~/tmp/scratch/Rtmpn0h6Di’ ‘~/tmp/scratch/RtmpnA3GXc’   ‘~/tmp/scratch/RtmpnSMXZi’ ‘~/tmp/scratch/RtmpnScj2Q’   ‘~/tmp/scratch/Rtmpnscyy9’ ‘~/tmp/scratch/Rtmpo1yGEG’   ‘~/tmp/scratch/RtmpoPoGSr’ ‘~/tmp/scratch/RtmppGfi6g’   ‘~/tmp/scratch/RtmpqOO1OK’ ‘~/tmp/scratch/RtmpqTLyvS’   ‘~/tmp/scratch/Rtmpql8QMr’ ‘~/tmp/scratch/RtmpqyLpzy’   ‘~/tmp/scratch/RtmprAhATi’ ‘~/tmp/scratch/RtmprKDp6h’   ‘~/tmp/scratch/RtmpsszWrs’ ‘~/tmp/scratch/RtmptPuieg’   ‘~/tmp/scratch/RtmpuFekiz’ ‘~/tmp/scratch/Rtmpv8JAiC’   ‘~/tmp/scratch/Rtmpw287Ey’ ‘~/tmp/scratch/Rtmpw5J4OC’   ‘~/tmp/scratch/RtmpwGooSk’ ‘~/tmp/scratch/RtmpwdU4bz’   ‘~/tmp/scratch/RtmpwmcW67’ ‘~/tmp/scratch/RtmpwwQ1ry’   ‘~/tmp/scratch/RtmpxuxzKu’ ‘~/tmp/scratch/RtmpyDAItu’   ‘~/tmp/scratch/RtmpyTnSQQ’ ‘~/tmp/scratch/RtmpylaoiK’   ‘~/tmp/scratch/Rtmpz8X6fH’ ‘~/tmp/scratch/xvfb-run.1P1cXu’   ‘~/tmp/scratch/xvfb-run.1tyUkI’ ‘~/tmp/scratch/xvfb-run.4nGLjF’   ‘~/tmp/scratch/xvfb-run.71oT1Q’ ‘~/tmp/scratch/xvfb-run.7TVCPi’   ‘~/tmp/scratch/xvfb-run.8R2Gee’ ‘~/tmp/scratch/xvfb-run.9VW16g’   ‘~/tmp/scratch/xvfb-run.BI3snL’ ‘~/tmp/scratch/xvfb-run.Bhmh0T’   ‘~/tmp/scratch/xvfb-run.Bvmr3T’ ‘~/tmp/scratch/xvfb-run.CKAGgZ’   ‘~/tmp/scratch/xvfb-run.E3zOWG’ ‘~/tmp/scratch/xvfb-run.GIYv2H’   ‘~/tmp/scratch/xvfb-run.HibncN’ ‘~/tmp/scratch/xvfb-run.KvItu8’   ‘~/tmp/scratch/xvfb-run.LL4Tfo’ ‘~/tmp/scratch/xvfb-run.LZgIdv’   ‘~/tmp/scratch/xvfb-run.Mx3MwT’ ‘~/tmp/scratch/xvfb-run.P52T7k’   ‘~/tmp/scratch/xvfb-run.PI32aA’ ‘~/tmp/scratch/xvfb-run.RNLfxF’   ‘~/tmp/scratch/xvfb-run.SANqCH’ ‘~/tmp/scratch/xvfb-run.TIAbbl’   ‘~/tmp/scratch/xvfb-run.VU1ukH’ ‘~/tmp/scratch/xvfb-run.VorOjS’   ‘~/tmp/scratch/xvfb-run.Wjj4Em’ ‘~/tmp/scratch/xvfb-run.Y7KL2I’   ‘~/tmp/scratch/xvfb-run.YQKJ2q’ ‘~/tmp/scratch/xvfb-run.bTqwmd’   ‘~/tmp/scratch/xvfb-run.daShk1’ ‘~/tmp/scratch/xvfb-run.eHeC8V’   ‘~/tmp/scratch/xvfb-run.esgEyD’ ‘~/tmp/scratch/xvfb-run.f5pQvJ’   ‘~/tmp/scratch/xvfb-run.hHlx0j’ ‘~/tmp/scratch/xvfb-run.i40qIL’   ‘~/tmp/scratch/xvfb-run.iNYIL4’ ‘~/tmp/scratch/xvfb-run.k0X7UZ’   ‘~/tmp/scratch/xvfb-run.kVoXPG’ ‘~/tmp/scratch/xvfb-run.kw4MVg’   ‘~/tmp/scratch/xvfb-run.pjApPt’ ‘~/tmp/scratch/xvfb-run.qmF3fh’   ‘~/tmp/scratch/xvfb-run.r5NDoN’ ‘~/tmp/scratch/xvfb-run.r99EXo’   ‘~/tmp/scratch/xvfb-run.t9CdSr’ ‘~/tmp/scratch/xvfb-run.w8XZgx’   ‘~/tmp/scratch/xvfb-run.wd7hiH’ ‘~/tmp/scratch/xvfb-run.yEjIa1’   ‘~/tmp/scratch/xvfb-run.yePk8f’
• DONE

Status: 2 NOTEs