• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 13:09:37 UTC
• checking for file ‘TreeMineR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘TreeMineR’ version ‘1.0.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘TreeMineR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/9s] OK Examples with CPU (user + system) or elapsed time > 5s            user system elapsed TreeMineR 6.126 0.167 8.791
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [16s/22s] OK   Running ‘testthat.R’ [16s/22s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [4s/4s] OK
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0CQGlS’ ‘~/tmp/scratch/Rtmp13NB82’   ‘~/tmp/scratch/Rtmp13vJIy’ ‘~/tmp/scratch/Rtmp1IJ0qt’   ‘~/tmp/scratch/Rtmp2P9rJ5’ ‘~/tmp/scratch/Rtmp2fVZam’   ‘~/tmp/scratch/Rtmp2vF1eg’ ‘~/tmp/scratch/Rtmp3xFpet’   ‘~/tmp/scratch/Rtmp4IZjyi’ ‘~/tmp/scratch/Rtmp4pgpxc’   ‘~/tmp/scratch/Rtmp53SFxj’ ‘~/tmp/scratch/Rtmp78PN83’   ‘~/tmp/scratch/Rtmp7B7xsH’ ‘~/tmp/scratch/Rtmp82WX16’   ‘~/tmp/scratch/Rtmp8MbcQU’ ‘~/tmp/scratch/Rtmp8YzlYV’   ‘~/tmp/scratch/Rtmp8fkhGV’ ‘~/tmp/scratch/Rtmp9trrrk’   ‘~/tmp/scratch/Rtmp9wFao1’ ‘~/tmp/scratch/Rtmp9xhwHE’   ‘~/tmp/scratch/RtmpAOPM5i’ ‘~/tmp/scratch/RtmpARgduQ’   ‘~/tmp/scratch/RtmpAocOX3’ ‘~/tmp/scratch/RtmpAzbph9’   ‘~/tmp/scratch/RtmpB72R7P’ ‘~/tmp/scratch/RtmpB77ILz’   ‘~/tmp/scratch/RtmpC4eaoX’ ‘~/tmp/scratch/RtmpCEGlpJ’   ‘~/tmp/scratch/RtmpCHVXDN’ ‘~/tmp/scratch/RtmpCJ6Ba5’   ‘~/tmp/scratch/RtmpCThVjE’ ‘~/tmp/scratch/RtmpChFeqB’   ‘~/tmp/scratch/RtmpEQFbme’ ‘~/tmp/scratch/RtmpEfYXB8’   ‘~/tmp/scratch/RtmpEg3CMt’ ‘~/tmp/scratch/RtmpF0bBfZ’   ‘~/tmp/scratch/RtmpFMcpmL’ ‘~/tmp/scratch/RtmpFeIy0A’   ‘~/tmp/scratch/RtmpFy0Uah’ ‘~/tmp/scratch/RtmpGC3MfY’   ‘~/tmp/scratch/RtmpGePADU’ ‘~/tmp/scratch/RtmpHVWg1f’   ‘~/tmp/scratch/RtmpIfbxv1’ ‘~/tmp/scratch/RtmpIwAiMP’   ‘~/tmp/scratch/RtmpJ5sLB1’ ‘~/tmp/scratch/RtmpJG8GRM’   ‘~/tmp/scratch/RtmpKCfdlr’ ‘~/tmp/scratch/RtmpLAW6Zz’   ‘~/tmp/scratch/RtmpLz0g4l’ ‘~/tmp/scratch/RtmpMDms8T’   ‘~/tmp/scratch/RtmpMJYuWB’ ‘~/tmp/scratch/RtmpNLZfeJ’   ‘~/tmp/scratch/RtmpNn4zJF’ ‘~/tmp/scratch/RtmpO2BrfW’   ‘~/tmp/scratch/RtmpOAcPtF’ ‘~/tmp/scratch/RtmpONb3pA’   ‘~/tmp/scratch/RtmpOT6Pdb’ ‘~/tmp/scratch/RtmpPlzuNi’   ‘~/tmp/scratch/RtmpQNjo8l’ ‘~/tmp/scratch/RtmpQVbTE3’   ‘~/tmp/scratch/RtmpR4yZGL’ ‘~/tmp/scratch/RtmpT21y2V’   ‘~/tmp/scratch/RtmpTSkdbF’ ‘~/tmp/scratch/RtmpTnuulf’   ‘~/tmp/scratch/RtmpTuOPKp’ ‘~/tmp/scratch/RtmpUPWt8O’   ‘~/tmp/scratch/RtmpWMiGHT’ ‘~/tmp/scratch/RtmpWbfX10’   ‘~/tmp/scratch/RtmpXJVXtM’ ‘~/tmp/scratch/RtmpYSQ6Ha’   ‘~/tmp/scratch/RtmpYW1hHa’ ‘~/tmp/scratch/RtmpZOc9MX’   ‘~/tmp/scratch/RtmpZd5279’ ‘~/tmp/scratch/RtmpZtlcZq’   ‘~/tmp/scratch/RtmpahDWQy’ ‘~/tmp/scratch/RtmpanLUTO’   ‘~/tmp/scratch/Rtmpat0jim’ ‘~/tmp/scratch/RtmpbWL2rB’   ‘~/tmp/scratch/RtmpcHf2kl’ ‘~/tmp/scratch/RtmpcKKoPz’   ‘~/tmp/scratch/RtmpcNb3VA’ ‘~/tmp/scratch/RtmpdYfLdf’   ‘~/tmp/scratch/Rtmpdi2pOw’ ‘~/tmp/scratch/RtmpdrhbdX’   ‘~/tmp/scratch/RtmpeWFNmj’ ‘~/tmp/scratch/RtmpeYGUuF’   ‘~/tmp/scratch/RtmpfAJMfM’ ‘~/tmp/scratch/RtmpfVxnNS’   ‘~/tmp/scratch/Rtmpg1OJtM’ ‘~/tmp/scratch/Rtmpg41j6Y’   ‘~/tmp/scratch/Rtmph0NHo1’ ‘~/tmp/scratch/Rtmph4dpZU’   ‘~/tmp/scratch/RtmphpKiJV’ ‘~/tmp/scratch/RtmpjbByJS’   ‘~/tmp/scratch/Rtmpjpah6H’ ‘~/tmp/scratch/RtmpjqLJqF’   ‘~/tmp/scratch/RtmplT85mh’ ‘~/tmp/scratch/Rtmpm6RRgq’   ‘~/tmp/scratch/RtmpmGoSEi’ ‘~/tmp/scratch/RtmpmHCd4u’   ‘~/tmp/scratch/RtmpmR6jmF’ ‘~/tmp/scratch/RtmpmT1eUD’   ‘~/tmp/scratch/RtmpmuE5sV’ ‘~/tmp/scratch/Rtmpn21Feu’   ‘~/tmp/scratch/RtmpnsQSiz’ ‘~/tmp/scratch/RtmpoYMBoa’   ‘~/tmp/scratch/Rtmpp7LxeS’ ‘~/tmp/scratch/RtmppbGUFf’   ‘~/tmp/scratch/RtmpqUQJ78’ ‘~/tmp/scratch/RtmpquyyBZ’   ‘~/tmp/scratch/Rtmpr9ugUX’ ‘~/tmp/scratch/RtmprqfWzR’   ‘~/tmp/scratch/RtmpsUMqHk’ ‘~/tmp/scratch/RtmpsoGCGV’   ‘~/tmp/scratch/Rtmptz6xIb’ ‘~/tmp/scratch/Rtmpv7846S’   ‘~/tmp/scratch/RtmpvUyUW0’ ‘~/tmp/scratch/Rtmpvp7xLX’   ‘~/tmp/scratch/RtmpvyCxRq’ ‘~/tmp/scratch/Rtmpx1QqX8’   ‘~/tmp/scratch/Rtmpx6LxUM’ ‘~/tmp/scratch/RtmpxFFvxH’   ‘~/tmp/scratch/Rtmpy5toEd’ ‘~/tmp/scratch/RtmpyWjsSC’   ‘~/tmp/scratch/RtmpyvSbWL’ ‘~/tmp/scratch/RtmpzLCPsS’   ‘~/tmp/scratch/RtmpzxadZo’   ‘~/tmp/scratch/quarto-sessiona656b9e83bb6428f’   ‘~/tmp/scratch/xvfb-run.02Zjz3’ ‘~/tmp/scratch/xvfb-run.7IKAhG’   ‘~/tmp/scratch/xvfb-run.ALTuBD’ ‘~/tmp/scratch/xvfb-run.AwOUk6’   ‘~/tmp/scratch/xvfb-run.CDXtlD’ ‘~/tmp/scratch/xvfb-run.DURB2I’   ‘~/tmp/scratch/xvfb-run.DxGknM’ ‘~/tmp/scratch/xvfb-run.G5rdVM’   ‘~/tmp/scratch/xvfb-run.KfCWJj’ ‘~/tmp/scratch/xvfb-run.LAocb8’   ‘~/tmp/scratch/xvfb-run.NE1paZ’ ‘~/tmp/scratch/xvfb-run.NRUNOa’   ‘~/tmp/scratch/xvfb-run.NYkACB’ ‘~/tmp/scratch/xvfb-run.P53VwW’   ‘~/tmp/scratch/xvfb-run.PuGaCF’ ‘~/tmp/scratch/xvfb-run.PvFVV9’   ‘~/tmp/scratch/xvfb-run.Q3xa52’ ‘~/tmp/scratch/xvfb-run.QV5b80’   ‘~/tmp/scratch/xvfb-run.QvjEuu’ ‘~/tmp/scratch/xvfb-run.VDoMGt’   ‘~/tmp/scratch/xvfb-run.Wh7qwm’ ‘~/tmp/scratch/xvfb-run.Xwkxyc’   ‘~/tmp/scratch/xvfb-run.YAmI9U’ ‘~/tmp/scratch/xvfb-run.ZRP55P’   ‘~/tmp/scratch/xvfb-run.ZZ2mqd’ ‘~/tmp/scratch/xvfb-run.cI2GuD’   ‘~/tmp/scratch/xvfb-run.eOUj0m’ ‘~/tmp/scratch/xvfb-run.eY9DEM’   ‘~/tmp/scratch/xvfb-run.fv3VXF’ ‘~/tmp/scratch/xvfb-run.irxhDc’   ‘~/tmp/scratch/xvfb-run.j8KRlV’ ‘~/tmp/scratch/xvfb-run.jqynu5’   ‘~/tmp/scratch/xvfb-run.k1T3sC’ ‘~/tmp/scratch/xvfb-run.l4Jsy8’   ‘~/tmp/scratch/xvfb-run.qgEmBx’ ‘~/tmp/scratch/xvfb-run.ruK4tv’   ‘~/tmp/scratch/xvfb-run.t6vaEd’ ‘~/tmp/scratch/xvfb-run.tkgydg’   ‘~/tmp/scratch/xvfb-run.v4MSn4’ ‘~/tmp/scratch/xvfb-run.wMKruu’   ‘~/tmp/scratch/xvfb-run.wfolMu’ ‘~/tmp/scratch/xvfb-run.xJS8xe’   ‘~/tmp/scratch/xvfb-run.xVd5Oq’ ‘~/tmp/scratch/xvfb-run.xtzKZc’   ‘~/tmp/scratch/xvfb-run.yz3wPJ’ ‘~/tmp/scratch/xvfb-run.zYqqrk’   ‘/dev/shm/06cb37fe-8cf1-4222-befa-4bfebf6f20b4’   ‘/dev/shm/06cb37fe-8cf1-4222-befa-4bfebf6f20b4_counter’   ‘/dev/shm/15e40ee6-3971-4dc3-af1e-3598f4d81264’   ‘/dev/shm/15e40ee6-3971-4dc3-af1e-3598f4d81264_counter’   ‘/dev/shm/2aec6478-7b62-4bba-a1ae-70f169cf7781’   ‘/dev/shm/2aec6478-7b62-4bba-a1ae-70f169cf7781_counter’   ‘/dev/shm/8f027a37-d559-49de-b06f-ebb9d95f0f4c’   ‘/dev/shm/8f027a37-d559-49de-b06f-ebb9d95f0f4c_counter’   ‘/dev/shm/bd5950de-703e-4974-be2d-79c40a93079a’   ‘/dev/shm/bd5950de-703e-4974-be2d-79c40a93079a_counter’   ‘/dev/shm/c132a853-3500-4aac-9d87-aa352d8ddfea’   ‘/dev/shm/c132a853-3500-4aac-9d87-aa352d8ddfea_counter’   ‘/dev/shm/sem.50d85242-8b47-46b9-bc90-602058525457_bigmemory_counter_mutex’   ‘/dev/shm/sem.527862ae-f080-4a76-9def-e2465fee717b_bigmemory_counter_mutex’   ‘/dev/shm/sem.9ed40b56-a2e8-4a1f-a8b9-435f980cc9d9_bigmemory_counter_mutex’   ‘/dev/shm/sem.b5952819-6b8e-483b-9d46-c3123c9b771e_bigmemory_counter_mutex’   ‘/dev/shm/sem.c7dacfee-cdf2-4e37-91d4-5ff6782190f9_bigmemory_counter_mutex’   ‘/dev/shm/sem.fab05b85-70d2-4d57-9a6f-aaafee30b975_bigmemory_counter_mutex’
• DONE

Status: 1 NOTE