• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 13:04:04 UTC
• checking for file ‘SuperCell/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘SuperCell’ version ‘1.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘velocyto.R’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘SuperCell’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking whether startup messages can be suppressed ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/8s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [0s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [7s/9s] OK   Running ‘testthat.R’ [7s/8s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [29s/32s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Zi30F’ ‘~/tmp/scratch/Rtmp0ps3Cx’   ‘~/tmp/scratch/Rtmp0q5Z9o’ ‘~/tmp/scratch/Rtmp0vBOzB’   ‘~/tmp/scratch/Rtmp1kllNU’ ‘~/tmp/scratch/Rtmp1u2FmU’   ‘~/tmp/scratch/Rtmp2C8RBp’ ‘~/tmp/scratch/Rtmp2EqCfJ’   ‘~/tmp/scratch/Rtmp2ZuTwO’ ‘~/tmp/scratch/Rtmp2pjSzJ’   ‘~/tmp/scratch/Rtmp2rupV0’ ‘~/tmp/scratch/Rtmp4mZrkD’   ‘~/tmp/scratch/Rtmp5MoUeo’ ‘~/tmp/scratch/Rtmp5QhNgF’   ‘~/tmp/scratch/Rtmp657t7V’ ‘~/tmp/scratch/Rtmp7RplP0’   ‘~/tmp/scratch/Rtmp8ZJYk2’ ‘~/tmp/scratch/Rtmp9HI8wy’   ‘~/tmp/scratch/Rtmp9pds5Y’ ‘~/tmp/scratch/Rtmp9xbgkD’   ‘~/tmp/scratch/Rtmp9yHhYC’ ‘~/tmp/scratch/Rtmp9zxFWX’   ‘~/tmp/scratch/RtmpA4326h’ ‘~/tmp/scratch/RtmpA9uRyA’   ‘~/tmp/scratch/RtmpAXwFBP’ ‘~/tmp/scratch/RtmpAx0TdD’   ‘~/tmp/scratch/RtmpBA1uxU’ ‘~/tmp/scratch/RtmpBUlVaI’   ‘~/tmp/scratch/RtmpBmqVcX’ ‘~/tmp/scratch/RtmpC6iTxe’   ‘~/tmp/scratch/RtmpDgP86n’ ‘~/tmp/scratch/RtmpEpAtOw’   ‘~/tmp/scratch/RtmpG96QI7’ ‘~/tmp/scratch/RtmpGFrSuB’   ‘~/tmp/scratch/RtmpGLMLQf’ ‘~/tmp/scratch/RtmpGRXxCQ’   ‘~/tmp/scratch/RtmpHBRtoA’ ‘~/tmp/scratch/RtmpHQXWGa’   ‘~/tmp/scratch/RtmpHROLLJ’ ‘~/tmp/scratch/RtmpHSduNZ’   ‘~/tmp/scratch/RtmpIaAErk’ ‘~/tmp/scratch/RtmpJD0Ir2’   ‘~/tmp/scratch/RtmpL26txK’ ‘~/tmp/scratch/RtmpL9U4rt’   ‘~/tmp/scratch/RtmpLZ6iFG’ ‘~/tmp/scratch/RtmpLZZN9k’   ‘~/tmp/scratch/RtmpLpljnL’ ‘~/tmp/scratch/RtmpM56gwn’   ‘~/tmp/scratch/RtmpMKydKc’ ‘~/tmp/scratch/RtmpMRHoH8’   ‘~/tmp/scratch/RtmpMSkfoY’ ‘~/tmp/scratch/RtmpNEubKX’   ‘~/tmp/scratch/RtmpPSrsTS’ ‘~/tmp/scratch/RtmpPakoS9’   ‘~/tmp/scratch/RtmpPelnXa’ ‘~/tmp/scratch/RtmpQ5X0Fn’   ‘~/tmp/scratch/RtmpQNN9TT’ ‘~/tmp/scratch/RtmpQO80Q4’   ‘~/tmp/scratch/RtmpRHJb7T’ ‘~/tmp/scratch/RtmpRKROrB’   ‘~/tmp/scratch/RtmpRlBO81’ ‘~/tmp/scratch/RtmpS2T5BJ’   ‘~/tmp/scratch/RtmpSR5i8S’ ‘~/tmp/scratch/RtmpSxdiSJ’   ‘~/tmp/scratch/RtmpTCMqGx’ ‘~/tmp/scratch/RtmpUKZoi2’   ‘~/tmp/scratch/RtmpUeo0sB’ ‘~/tmp/scratch/RtmpVRnyKE’   ‘~/tmp/scratch/RtmpWLANXN’ ‘~/tmp/scratch/RtmpWYjZHY’   ‘~/tmp/scratch/RtmpWgfoXr’ ‘~/tmp/scratch/RtmpWotPa2’   ‘~/tmp/scratch/RtmpXOEdYZ’ ‘~/tmp/scratch/RtmpXTKV7q’   ‘~/tmp/scratch/RtmpXzbzHf’ ‘~/tmp/scratch/RtmpYMuKkf’   ‘~/tmp/scratch/RtmpYdxt28’ ‘~/tmp/scratch/RtmpYpCqIn’   ‘~/tmp/scratch/RtmpZPkMa6’ ‘~/tmp/scratch/RtmpZksr2q’   ‘~/tmp/scratch/RtmpZpYd30’ ‘~/tmp/scratch/RtmpZx8lIf’   ‘~/tmp/scratch/RtmpZxXIUU’ ‘~/tmp/scratch/Rtmpa8RvbA’   ‘~/tmp/scratch/Rtmpa9cu66’ ‘~/tmp/scratch/RtmpaivoV3’   ‘~/tmp/scratch/RtmpbKVhy3’ ‘~/tmp/scratch/RtmpcIi8Ym’   ‘~/tmp/scratch/RtmpdhhGrI’ ‘~/tmp/scratch/RtmpdwxWQW’   ‘~/tmp/scratch/RtmpdyGSjV’ ‘~/tmp/scratch/RtmpeAT5y1’   ‘~/tmp/scratch/RtmpeFLFuc’ ‘~/tmp/scratch/Rtmpew6EGV’   ‘~/tmp/scratch/RtmpfTO6tS’ ‘~/tmp/scratch/RtmpffKdTc’   ‘~/tmp/scratch/RtmphARnCi’ ‘~/tmp/scratch/RtmphxTlGZ’   ‘~/tmp/scratch/RtmpiAjTv1’ ‘~/tmp/scratch/RtmpiBMA5p’   ‘~/tmp/scratch/RtmpiTqyn5’ ‘~/tmp/scratch/Rtmpip6AMJ’   ‘~/tmp/scratch/Rtmpir86Rq’ ‘~/tmp/scratch/RtmpjVLkXK’   ‘~/tmp/scratch/RtmpkSjKMd’ ‘~/tmp/scratch/RtmplQYnK9’   ‘~/tmp/scratch/RtmpnMDYxT’ ‘~/tmp/scratch/RtmpnVJSSB’   ‘~/tmp/scratch/RtmpnhmAbc’ ‘~/tmp/scratch/RtmpnzP1we’   ‘~/tmp/scratch/RtmpnzT1tC’ ‘~/tmp/scratch/RtmponeOYI’   ‘~/tmp/scratch/Rtmpp5GPWg’ ‘~/tmp/scratch/RtmppQ1SG2’   ‘~/tmp/scratch/RtmppiR5V9’ ‘~/tmp/scratch/Rtmpq0PFYR’   ‘~/tmp/scratch/RtmpqQRqbp’ ‘~/tmp/scratch/Rtmpqrp3Je’   ‘~/tmp/scratch/Rtmpr5hVj5’ ‘~/tmp/scratch/RtmprD0vr1’   ‘~/tmp/scratch/RtmprOLdqa’ ‘~/tmp/scratch/Rtmps70fxV’   ‘~/tmp/scratch/RtmpsTwvvC’ ‘~/tmp/scratch/RtmpsaB1ds’   ‘~/tmp/scratch/RtmptLEfR2’ ‘~/tmp/scratch/RtmptUM4Bm’   ‘~/tmp/scratch/RtmptcDUEP’ ‘~/tmp/scratch/RtmpulktQL’   ‘~/tmp/scratch/RtmpwDz07z’ ‘~/tmp/scratch/RtmpwIpN7N’   ‘~/tmp/scratch/RtmpwMv9CU’ ‘~/tmp/scratch/RtmpwVscy0’   ‘~/tmp/scratch/RtmpwhwnH6’ ‘~/tmp/scratch/RtmpxIREdk’   ‘~/tmp/scratch/RtmpxSopP6’ ‘~/tmp/scratch/Rtmpxs6xUZ’   ‘~/tmp/scratch/RtmpysUEBb’ ‘~/tmp/scratch/Rtmpz8OxAO’   ‘~/tmp/scratch/RtmpzEujXc’ ‘~/tmp/scratch/RtmpzhDaMk’   ‘~/tmp/scratch/ccLThQS2.s’ ‘~/tmp/scratch/xvfb-run.0CVbTq’   ‘~/tmp/scratch/xvfb-run.0IiOz0’ ‘~/tmp/scratch/xvfb-run.1uGCIR’   ‘~/tmp/scratch/xvfb-run.2PTgdU’ ‘~/tmp/scratch/xvfb-run.2dHBqU’   ‘~/tmp/scratch/xvfb-run.42buTp’ ‘~/tmp/scratch/xvfb-run.6qn5zu’   ‘~/tmp/scratch/xvfb-run.7aAX2c’ ‘~/tmp/scratch/xvfb-run.86Fju3’   ‘~/tmp/scratch/xvfb-run.AO8sV1’ ‘~/tmp/scratch/xvfb-run.AYyfxY’   ‘~/tmp/scratch/xvfb-run.AdT6pd’ ‘~/tmp/scratch/xvfb-run.AfwPEv’   ‘~/tmp/scratch/xvfb-run.AmEQN2’ ‘~/tmp/scratch/xvfb-run.BQRlM8’   ‘~/tmp/scratch/xvfb-run.Bc7YWr’ ‘~/tmp/scratch/xvfb-run.Bhex2m’   ‘~/tmp/scratch/xvfb-run.CSlwZ4’ ‘~/tmp/scratch/xvfb-run.ErGt2z’   ‘~/tmp/scratch/xvfb-run.FQ0LdE’ ‘~/tmp/scratch/xvfb-run.I5Bnve’   ‘~/tmp/scratch/xvfb-run.LEKVP6’ ‘~/tmp/scratch/xvfb-run.LKnHac’   ‘~/tmp/scratch/xvfb-run.NlLZeH’ ‘~/tmp/scratch/xvfb-run.ORZUdc’   ‘~/tmp/scratch/xvfb-run.PMXP5T’ ‘~/tmp/scratch/xvfb-run.Pzl740’   ‘~/tmp/scratch/xvfb-run.QNta4K’ ‘~/tmp/scratch/xvfb-run.RICydy’   ‘~/tmp/scratch/xvfb-run.RM2vho’ ‘~/tmp/scratch/xvfb-run.RjXFHb’   ‘~/tmp/scratch/xvfb-run.SYPQ67’ ‘~/tmp/scratch/xvfb-run.UEmWjh’   ‘~/tmp/scratch/xvfb-run.UuvWXI’ ‘~/tmp/scratch/xvfb-run.VHTKb4’   ‘~/tmp/scratch/xvfb-run.ZQmO5D’ ‘~/tmp/scratch/xvfb-run.ZtKPmJ’   ‘~/tmp/scratch/xvfb-run.Zw87qk’ ‘~/tmp/scratch/xvfb-run.adIjB3’   ‘~/tmp/scratch/xvfb-run.avmAbl’ ‘~/tmp/scratch/xvfb-run.bXGg3G’   ‘~/tmp/scratch/xvfb-run.eJhs4C’ ‘~/tmp/scratch/xvfb-run.ejXVeY’   ‘~/tmp/scratch/xvfb-run.ewLDPm’ ‘~/tmp/scratch/xvfb-run.exwJ6l’   ‘~/tmp/scratch/xvfb-run.f2VwhO’ ‘~/tmp/scratch/xvfb-run.foZLIo’   ‘~/tmp/scratch/xvfb-run.lbl1g4’ ‘~/tmp/scratch/xvfb-run.nwON6f’   ‘~/tmp/scratch/xvfb-run.ofY11u’ ‘~/tmp/scratch/xvfb-run.pu0oa6’   ‘~/tmp/scratch/xvfb-run.qThI8Z’ ‘~/tmp/scratch/xvfb-run.qgoPRm’   ‘~/tmp/scratch/xvfb-run.u75qRM’ ‘~/tmp/scratch/xvfb-run.vb21BF’   ‘~/tmp/scratch/xvfb-run.vyxV89’ ‘~/tmp/scratch/xvfb-run.w7gyBO’   ‘~/tmp/scratch/xvfb-run.wEcJWZ’ ‘~/tmp/scratch/xvfb-run.yPI3LW’   ‘~/tmp/scratch/xvfb-run.yZcj9Z’ ‘~/tmp/scratch/xvfb-run.yvNeRm’
• DONE

Status: 1 NOTE