* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘SpatialExtremes’ ...
** package ‘SpatialExtremes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0IiCto/R.INSTALL1f7f7375292f97/SpatialExtremes/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c brownResnick.c -o brownResnick.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c circulant.c -o circulant.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c concurrence.c -o concurrence.o
concurrence.c: In function ‘concProbKendall’:
concurrence.c:66: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
66 | #pragma omp parallel for
|
concurrence.c:97: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
97 | #pragma omp parallel for
|
concurrence.c: In function ‘empiricalBootConcProb’:
concurrence.c:161: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
161 | #pragma omp parallel for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c condsimMaxStab.c -o condsimMaxStab.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c copula.c -o copula.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covariance.c -o covariance.o
covariance.c: In function ‘whittleMatern’:
covariance.c:31: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
31 | #pragma omp parallel for
|
covariance.c: In function ‘cauchy’:
covariance.c:70: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
70 | #pragma omp parallel for
|
covariance.c: In function ‘caugen’:
covariance.c:111: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
111 | #pragma omp parallel for
|
covariance.c: In function ‘powerExp’:
covariance.c:146: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
146 | #pragma omp parallel for
|
covariance.c: In function ‘bessel’:
covariance.c:183: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
183 | #pragma omp parallel for
|
covariance.c: In function ‘mahalDistFct’:
covariance.c:226: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
226 | #pragma omp parallel for
|
covariance.c: In function ‘mahalDistFct3d’:
covariance.c:260: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
260 | #pragma omp parallel for
|
covariance.c: In function ‘geomCovariance’:
covariance.c:314: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
314 | #pragma omp parallel for
|
covariance.c: In function ‘brownResnick’:
covariance.c:329: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
329 | #pragma omp parallel for
|
covariance.c: In function ‘fbm’:
covariance.c:364: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
364 | #pragma omp parallel for
|
covariance.c:368: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
368 | #pragma omp parallel for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c debugUtils.c -o debugUtils.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c direct.c -o direct.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extcoeff.c -o extcoeff.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c extremalt.c -o extremalt.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fft.c -o fft.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fitcovmat.c -o fitcovmat.o
fitcovmat.c: In function ‘fitcovmat2d’:
fitcovmat.c:23: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
23 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fitcovmat3d’:
fitcovmat.c:50: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
50 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fitcovariance’:
fitcovmat.c:97: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
97 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fittcovariance’:
fitcovmat.c:149: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
149 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fiticovariance’:
fitcovmat.c:207: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
207 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fitgcovariance’:
fitcovmat.c:241: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
241 | #pragma omp parallel for reduction(+:dummy)
|
fitcovmat.c: In function ‘fitbrcovariance’:
fitcovmat.c:268: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
268 | #pragma omp parallel for reduction(+:dummy)
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fondeville.c -o fondeville.o
In file included from fondeville.c:31:
lattice_data.h: In function ‘pointEstimate’:
lattice_data.h:2:13: warning: unused variable ‘primeNumbers’ [-Wunused-variable]
2 | const int primeNumbers[1000] = {
| ^~~~~~~~~~~~
fondeville.c: In function ‘pmvnorm2’:
fondeville.c:229: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
229 | #pragma omp parallel for reduction(+:est)
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c geomgauss.c -o geomgauss.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kriging.c -o kriging.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c latentVariable.c -o latentVariable.o
latentVariable.c: In function ‘DIC’:
latentVariable.c:673: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
673 | #pragma omp parallel for reduction(+:tmp)
|
latentVariable.c:686: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
686 | #pragma omp parallel for reduction(+:tmp)
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c madogram.c -o madogram.o
madogram.c: In function ‘madogram’:
madogram.c:7: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
7 | #pragma omp parallel for
|
madogram.c: In function ‘variogram’:
madogram.c:30: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
30 | #pragma omp parallel for
|
madogram.c: In function ‘lmadogram’:
madogram.c:56: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
56 | #pragma omp parallel for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c maxLinear.c -o maxLinear.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c maxStableExactSimulation.c -o maxStableExactSimulation.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mcmc.c -o mcmc.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c newCode.c -o newCode.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pairwiselik.c -o pairwiselik.o
pairwiselik.c: In function ‘lplikschlather’:
pairwiselik.c:11: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
11 | #pragma omp parallel for reduction(+:dns)
|
pairwiselik.c: In function ‘lpliksmith’:
pairwiselik.c:83: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
83 | #pragma omp parallel for reduction(+:dns)
|
pairwiselik.c: In function ‘lplikschlatherind’:
pairwiselik.c:169: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
169 | #pragma omp parallel for reduction(+:dns)
|
pairwiselik.c:187: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
187 | #pragma omp parallel for reduction(+:dns)
|
pairwiselik.c: In function ‘lplikextremalt’:
pairwiselik.c:262: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
262 | #pragma omp parallel for reduction(+:dns)
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c penalizations.c -o penalizations.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c randomlines.c -o randomlines.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c schlather.c -o schlather.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c schlatherind.c -o schlatherind.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simBrownResnick.c -o simBrownResnick.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simextremalt.c -o simextremalt.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simgeometric.c -o simgeometric.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simschlather.c -o simschlather.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simsmith.c -o simsmith.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smith.c -o smith.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c smith3d.c -o smith3d.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spatgevlik.c -o spatgevlik.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c standardErrors.c -o standardErrors.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c standardErrorsCommonPart.c -o standardErrorsCommonPart.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c turningbands.c -o turningbands.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c univllik.c -o univllik.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o
utils.c: In function ‘distance’:
utils.c:11: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
11 | #pragma omp parallel for
|
utils.c:22: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
22 | #pragma omp parallel for
|
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weightedPairwiselik.c -o weightedPairwiselik.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o SpatialExtremes.so brownResnick.o circulant.o concurrence.o condsimMaxStab.o copula.o covariance.o debugUtils.o direct.o extcoeff.o extremalt.o fft.o fitcovmat.o fondeville.o geomgauss.o init.o kriging.o latentVariable.o madogram.o maxLinear.o maxStableExactSimulation.o mcmc.o newCode.o pairwiselik.o penalizations.o randomlines.o schlather.o schlatherind.o simBrownResnick.o simextremalt.o simgeometric.o simschlather.o simsmith.o smith.o smith3d.o spatgevlik.o standardErrors.o standardErrorsCommonPart.o turningbands.o univllik.o utils.o weightedPairwiselik.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0IiCto/R.INSTALL1f7f7375292f97/SpatialExtremes/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0IiCto/R.INSTALL1f7f7375292f97/SpatialExtremes/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0IiCto/R.INSTALL1f7f7375292f97/SpatialExtremes/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-SpatialExtremes/00new/SpatialExtremes/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SpatialExtremes)