- using R Under development (unstable) (2024-12-07 r87428)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-8) 14.2.0
GNU Fortran (Debian 14.2.0-8) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘SpaDES.core/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘SpaDES.core’ version ‘2.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... INFO
Package suggested but not available for checking: ‘NLMR’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘SpaDES.core’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [6s/7s] OK
- checking whether the package can be loaded with stated dependencies ... [6s/8s] OK
- checking whether the package can be unloaded cleanly ... [6s/9s] OK
- checking whether the namespace can be loaded with stated dependencies ... [6s/7s] OK
- checking whether the namespace can be unloaded cleanly ... [7s/8s] OK
- checking loading without being on the library search path ... [6s/7s] OK
- checking whether startup messages can be suppressed ... [6s/7s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [44s/50s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
SpaDES.core-package.Rd: copy, equalExtent, getColors,
divergentColors, layerNames, numLayers, Plot, clearPlot,
clickValues, clickExtent, clickCoordinates, dev, newPlot, rePlot
depsLoadOrder.Rd: igraph
downloadData.Rd: prepInputs
emptyEventList.Rd: data.table
moduleDiagram.Rd: igraph
moduleGraph.Rd: igraph
simList-accessors-events.Rd: data.table
simList-class.Rd: data.table
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [12s/14s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [65s/80s] OK
Running ‘test-all.R’ [64s/79s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [21s/31s] OK
- checking PDF version of manual ... [12s/19s] OK
- checking HTML version of manual ... [5s/9s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE