- using R Under development (unstable) (2026-07-02 r90204)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-16 (Debian 16.1.0-2) 16.1.0
GNU Fortran (Debian 16.1.0-2) 16.1.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-07-03 12:48:24 UTC
- checking for file ‘SPACO/DESCRIPTION’ ... OK
- this is package ‘SPACO’ version ‘1.0.1’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/1s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘SPACO’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘g++-16 (Debian 16.1.0-2) 16.1.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [7s/9s] OK
- checking whether the package can be loaded with stated dependencies ... [5s/7s] OK
- checking whether the package can be unloaded cleanly ... [5s/7s] OK
- checking whether the namespace can be loaded with stated dependencies ... [5s/6s] OK
- checking whether the namespace can be unloaded cleanly ... [7s/9s] OK
- checking loading without being on the library search path ... [6s/8s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [27s/39s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... NONE
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [8s/10s] ERROR
Running ‘testthat.R’ [7s/10s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(SPACO)
>
> test_check("SPACO")
Saving _problems/test-SCA-28.R
Saving _problems/test-SCA-35.R
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-SCA.R:28:3'): spaco works ────────────────────────────────────
Expected `test$score` to equal `test_Matrix$score`.
Differences:
actual | expected
[1] 0.16057 - 0.46844 [1]
[2] 0.26746 - 0.29956 [2]
[3] 0.33076 - 0.34247 [3]
[4] 0.00090 - 0.15194 [4]
[5] 0.07810 - 0.43811 [5]
[6] 0.06667 - 0.06705 [6]
[7] 0.09679 - 0.34930 [7]
[8] 0.34213 - 0.57946 [8]
[9] 0.00000 - 0.46440 [9]
[10] 0.11051 - 0.41404 [10]
── Failure ('test-SCA.R:35:3'): spaco works ────────────────────────────────────
Expected `test_more$score` to equal `test_more_Matrix$score`.
Differences:
actual | expected
[1] 0.18222 - 0.29545 [1]
[2] 0.06682 - 0.10916 [2]
[3] 0.05216 - 0.28255 [3]
[4] 0.07897 - 0.27080 [4]
[5] 0.23930 - 0.23973 [5]
[6] 0.01854 - 0.15789 [6]
[7] 0.00306 - 0.46847 [7]
[8] 0.46174 - 0.46429 [8]
[9] 0.00125 - 0.31624 [9]
[10] 0.00001 - 0.07393 [10]
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [4s/6s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR