• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 13:04:55 UTC
• checking for file ‘SNPfiltR/DESCRIPTION’ ... OK
• this is package ‘SNPfiltR’ version ‘1.0.7’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘SNPfiltR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/7s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/10s] OK Examples with CPU (user + system) or elapsed time > 5s                          user system elapsed assess_missing_data_pca 5.239 0.292 6.307
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [11s/14s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Fbie5’ ‘~/tmp/scratch/Rtmp0mKOV6’   ‘~/tmp/scratch/Rtmp11EQZ7’ ‘~/tmp/scratch/Rtmp2oqdQt’   ‘~/tmp/scratch/Rtmp4nbQTX’ ‘~/tmp/scratch/Rtmp5gxm5i’   ‘~/tmp/scratch/Rtmp5teJBJ’ ‘~/tmp/scratch/Rtmp6MxwX7’   ‘~/tmp/scratch/Rtmp73SqP9’ ‘~/tmp/scratch/Rtmp75UJHs’   ‘~/tmp/scratch/Rtmp7IWxbk’ ‘~/tmp/scratch/Rtmp7UDyk9’   ‘~/tmp/scratch/Rtmp7cJ36r’ ‘~/tmp/scratch/Rtmp81DCJy’   ‘~/tmp/scratch/Rtmp88I0fj’ ‘~/tmp/scratch/Rtmp88PnQ7’   ‘~/tmp/scratch/Rtmp8N6mgG’ ‘~/tmp/scratch/Rtmp8mlRNi’   ‘~/tmp/scratch/Rtmp93AJ6g’ ‘~/tmp/scratch/Rtmp9JD4p3’   ‘~/tmp/scratch/Rtmp9n1wc9’ ‘~/tmp/scratch/RtmpBDospC’   ‘~/tmp/scratch/RtmpBbvE2H’ ‘~/tmp/scratch/RtmpBlQxl2’   ‘~/tmp/scratch/RtmpBteZbb’ ‘~/tmp/scratch/RtmpBzr3mg’   ‘~/tmp/scratch/RtmpCFh21v’ ‘~/tmp/scratch/RtmpCWfZPB’   ‘~/tmp/scratch/RtmpCuXKUZ’ ‘~/tmp/scratch/RtmpEKFLbZ’   ‘~/tmp/scratch/RtmpELQeml’ ‘~/tmp/scratch/RtmpEadYqB’   ‘~/tmp/scratch/RtmpF26Rjt’ ‘~/tmp/scratch/RtmpFVXhTY’   ‘~/tmp/scratch/RtmpHbrpXp’ ‘~/tmp/scratch/RtmpHh1o9q’   ‘~/tmp/scratch/RtmpIeA5C8’ ‘~/tmp/scratch/RtmpK5NB84’   ‘~/tmp/scratch/RtmpK7SWXK’ ‘~/tmp/scratch/RtmpKOpED4’   ‘~/tmp/scratch/RtmpKytGZE’ ‘~/tmp/scratch/RtmpL4Gksp’   ‘~/tmp/scratch/RtmpLarR7s’ ‘~/tmp/scratch/RtmpM9nOmJ’   ‘~/tmp/scratch/RtmpMHRihJ’ ‘~/tmp/scratch/RtmpMjiM93’   ‘~/tmp/scratch/RtmpMpzMUC’ ‘~/tmp/scratch/RtmpNdySU5’   ‘~/tmp/scratch/RtmpNfH4oz’ ‘~/tmp/scratch/RtmpOuGBBQ’   ‘~/tmp/scratch/RtmpOuLfcF’ ‘~/tmp/scratch/RtmpPJ6m57’   ‘~/tmp/scratch/RtmpQRfvrx’ ‘~/tmp/scratch/RtmpROeKu7’   ‘~/tmp/scratch/RtmpRPbg5S’ ‘~/tmp/scratch/RtmpRXTDhA’   ‘~/tmp/scratch/RtmpRxyXnT’ ‘~/tmp/scratch/RtmpShbDQY’   ‘~/tmp/scratch/RtmpSrnT1o’ ‘~/tmp/scratch/RtmpUhs70H’   ‘~/tmp/scratch/RtmpVCuYk8’ ‘~/tmp/scratch/RtmpX384df’   ‘~/tmp/scratch/RtmpY7uysN’ ‘~/tmp/scratch/RtmpZ3S0wb’   ‘~/tmp/scratch/RtmpZWGNaG’ ‘~/tmp/scratch/RtmpZeEdxt’   ‘~/tmp/scratch/RtmpZzoKVD’ ‘~/tmp/scratch/Rtmpa2C8AA’   ‘~/tmp/scratch/RtmpaSFzuy’ ‘~/tmp/scratch/Rtmpce8kWt’   ‘~/tmp/scratch/Rtmpcn4eYT’ ‘~/tmp/scratch/Rtmpcpswh4’   ‘~/tmp/scratch/Rtmpcudid8’ ‘~/tmp/scratch/RtmpcxT1mZ’   ‘~/tmp/scratch/RtmpdEkZIi’ ‘~/tmp/scratch/RtmpdzIRkF’   ‘~/tmp/scratch/RtmpegdAkP’ ‘~/tmp/scratch/Rtmpeq5NR1’   ‘~/tmp/scratch/Rtmpfe6QDC’ ‘~/tmp/scratch/RtmpfkHuro’   ‘~/tmp/scratch/RtmphK7Avf’ ‘~/tmp/scratch/Rtmphh3BR4’   ‘~/tmp/scratch/RtmphmsTaY’ ‘~/tmp/scratch/RtmphrsQDZ’   ‘~/tmp/scratch/Rtmpi45f0I’ ‘~/tmp/scratch/RtmpiM3eiq’   ‘~/tmp/scratch/Rtmpj3S8EC’ ‘~/tmp/scratch/RtmpjP0W2y’   ‘~/tmp/scratch/Rtmpk1Th64’ ‘~/tmp/scratch/RtmplHsSHx’   ‘~/tmp/scratch/RtmplVSUyN’ ‘~/tmp/scratch/Rtmpm2pwiT’   ‘~/tmp/scratch/RtmpmPjKtu’ ‘~/tmp/scratch/Rtmpn1t3md’   ‘~/tmp/scratch/RtmpnIFS1c’ ‘~/tmp/scratch/RtmpnaDS35’   ‘~/tmp/scratch/Rtmpnjh7TM’ ‘~/tmp/scratch/RtmpnwoBEw’   ‘~/tmp/scratch/Rtmpo3WZLC’ ‘~/tmp/scratch/RtmpoER3Ul’   ‘~/tmp/scratch/RtmpoamIYT’ ‘~/tmp/scratch/RtmppIy3Jr’   ‘~/tmp/scratch/RtmppWdbo9’ ‘~/tmp/scratch/RtmpqRd5ab’   ‘~/tmp/scratch/Rtmpr9eSOc’ ‘~/tmp/scratch/Rtmprzy0JN’   ‘~/tmp/scratch/Rtmpsjzllk’ ‘~/tmp/scratch/RtmptXJ9Tt’   ‘~/tmp/scratch/RtmptYltIo’ ‘~/tmp/scratch/Rtmpu7WkrD’   ‘~/tmp/scratch/RtmpuOL6tN’ ‘~/tmp/scratch/RtmpubUwRl’   ‘~/tmp/scratch/RtmpvaPDSt’ ‘~/tmp/scratch/Rtmpveg5EC’   ‘~/tmp/scratch/RtmpwKHdB3’ ‘~/tmp/scratch/Rtmpx60vVx’   ‘~/tmp/scratch/Rtmpxepq4v’ ‘~/tmp/scratch/Rtmpxo59FU’   ‘~/tmp/scratch/RtmpxykDof’ ‘~/tmp/scratch/Rtmpymr1Om’   ‘~/tmp/scratch/RtmpyqYmah’ ‘~/tmp/scratch/RtmpzYF3SF’   ‘~/tmp/scratch/RtmpzjtWtA’ ‘~/tmp/scratch/xvfb-run.0JZdfm’   ‘~/tmp/scratch/xvfb-run.0ZsLp5’ ‘~/tmp/scratch/xvfb-run.32IPmg’   ‘~/tmp/scratch/xvfb-run.3PBtrd’ ‘~/tmp/scratch/xvfb-run.87AeSv’   ‘~/tmp/scratch/xvfb-run.CGUcFB’ ‘~/tmp/scratch/xvfb-run.EhCHa5’   ‘~/tmp/scratch/xvfb-run.G3s4kj’ ‘~/tmp/scratch/xvfb-run.GjGaap’   ‘~/tmp/scratch/xvfb-run.H8g1Mq’ ‘~/tmp/scratch/xvfb-run.Kom5JH’   ‘~/tmp/scratch/xvfb-run.NlaYcB’ ‘~/tmp/scratch/xvfb-run.OueUtp’   ‘~/tmp/scratch/xvfb-run.PHsKSS’ ‘~/tmp/scratch/xvfb-run.PqZ0Mb’   ‘~/tmp/scratch/xvfb-run.QaKZh2’ ‘~/tmp/scratch/xvfb-run.T6Xe3N’   ‘~/tmp/scratch/xvfb-run.Tm4kck’ ‘~/tmp/scratch/xvfb-run.ZHGFyt’   ‘~/tmp/scratch/xvfb-run.ZWxsmp’ ‘~/tmp/scratch/xvfb-run.ZjsCW1’   ‘~/tmp/scratch/xvfb-run.dWl9xN’ ‘~/tmp/scratch/xvfb-run.dx0l17’   ‘~/tmp/scratch/xvfb-run.fFdjkT’ ‘~/tmp/scratch/xvfb-run.gWNwSZ’   ‘~/tmp/scratch/xvfb-run.iB3rjM’ ‘~/tmp/scratch/xvfb-run.kTpR7U’   ‘~/tmp/scratch/xvfb-run.mMFisl’ ‘~/tmp/scratch/xvfb-run.p5h0gg’   ‘~/tmp/scratch/xvfb-run.pMML7e’ ‘~/tmp/scratch/xvfb-run.pZkP8w’   ‘~/tmp/scratch/xvfb-run.q6BUXR’ ‘~/tmp/scratch/xvfb-run.qHHZyj’   ‘~/tmp/scratch/xvfb-run.qHTvbS’ ‘~/tmp/scratch/xvfb-run.qpw3NP’   ‘~/tmp/scratch/xvfb-run.r71xny’ ‘~/tmp/scratch/xvfb-run.sup9H5’   ‘~/tmp/scratch/xvfb-run.w8KyQm’ ‘~/tmp/scratch/xvfb-run.yy4QGy’
• DONE

Status: 1 NOTE