• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 12:47:41 UTC
• checking for file ‘Rphylopars/DESCRIPTION’ ... OK
• this is package ‘Rphylopars’ version ‘0.3.10’
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘Rphylopars’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/5s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
• checking loading without being on the library search path ... [4s/5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [23s/31s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [10s/13s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0DNtU1’ ‘~/tmp/scratch/Rtmp1OI2ML’   ‘~/tmp/scratch/Rtmp1rjelq’ ‘~/tmp/scratch/Rtmp27A7eW’   ‘~/tmp/scratch/Rtmp29olY2’ ‘~/tmp/scratch/Rtmp3LROCa’   ‘~/tmp/scratch/Rtmp3ZHidF’ ‘~/tmp/scratch/Rtmp3mokFk’   ‘~/tmp/scratch/Rtmp49aHBw’ ‘~/tmp/scratch/Rtmp4oWVJh’   ‘~/tmp/scratch/Rtmp4sf1b2’ ‘~/tmp/scratch/Rtmp5NIrnN’   ‘~/tmp/scratch/Rtmp6Webo0’ ‘~/tmp/scratch/Rtmp7ZS5YQ’   ‘~/tmp/scratch/Rtmp8KUgF0’ ‘~/tmp/scratch/Rtmp8Nlu8B’   ‘~/tmp/scratch/Rtmp8fHbM3’ ‘~/tmp/scratch/Rtmp92ihzp’   ‘~/tmp/scratch/Rtmp9cnzAz’ ‘~/tmp/scratch/Rtmp9lOg7i’   ‘~/tmp/scratch/RtmpA537QE’ ‘~/tmp/scratch/RtmpAuVu9Q’   ‘~/tmp/scratch/RtmpAuu6ej’ ‘~/tmp/scratch/RtmpB78RIx’   ‘~/tmp/scratch/RtmpBqrPeL’ ‘~/tmp/scratch/RtmpBvzrQF’   ‘~/tmp/scratch/RtmpDSE1k0’ ‘~/tmp/scratch/RtmpDhgqHE’   ‘~/tmp/scratch/RtmpDpj7K8’ ‘~/tmp/scratch/RtmpFATtUE’   ‘~/tmp/scratch/RtmpFGrtnR’ ‘~/tmp/scratch/RtmpFfsW0C’   ‘~/tmp/scratch/RtmpFjDTWy’ ‘~/tmp/scratch/RtmpFtOpRJ’   ‘~/tmp/scratch/RtmpG2kin4’ ‘~/tmp/scratch/RtmpG5vGEe’   ‘~/tmp/scratch/RtmpGU5eH0’ ‘~/tmp/scratch/RtmpH3FUu7’   ‘~/tmp/scratch/RtmpI3IYOk’ ‘~/tmp/scratch/RtmpIHxvX4’   ‘~/tmp/scratch/RtmpIKbtDT’ ‘~/tmp/scratch/RtmpIzPiPw’   ‘~/tmp/scratch/RtmpJNcs24’ ‘~/tmp/scratch/RtmpJTXUKP’   ‘~/tmp/scratch/RtmpJUKqOU’ ‘~/tmp/scratch/RtmpKMHlHR’   ‘~/tmp/scratch/RtmpKZ9Sly’ ‘~/tmp/scratch/RtmpL3U6BS’   ‘~/tmp/scratch/RtmpN0n3dI’ ‘~/tmp/scratch/RtmpN1Gxx9’   ‘~/tmp/scratch/RtmpNddFhw’ ‘~/tmp/scratch/RtmpOYs4cM’   ‘~/tmp/scratch/RtmpOkmrs2’ ‘~/tmp/scratch/RtmpPHo80v’   ‘~/tmp/scratch/RtmpPwJe7S’ ‘~/tmp/scratch/RtmpQ0JNiA’   ‘~/tmp/scratch/RtmpQ8qiKf’ ‘~/tmp/scratch/RtmpQcYHZL’   ‘~/tmp/scratch/RtmpSI49jg’ ‘~/tmp/scratch/RtmpSrMzC2’   ‘~/tmp/scratch/RtmpStR7pp’ ‘~/tmp/scratch/RtmpT7AuS1’   ‘~/tmp/scratch/RtmpTS4Gc8’ ‘~/tmp/scratch/RtmpU5OZ2l’   ‘~/tmp/scratch/RtmpUtLF1d’ ‘~/tmp/scratch/RtmpUzoDf7’   ‘~/tmp/scratch/RtmpVReoS0’ ‘~/tmp/scratch/RtmpW9Y30A’   ‘~/tmp/scratch/RtmpWBp3HL’ ‘~/tmp/scratch/RtmpWuWID1’   ‘~/tmp/scratch/RtmpXL4oJx’ ‘~/tmp/scratch/RtmpXQpHAs’   ‘~/tmp/scratch/RtmpXZKfH0’ ‘~/tmp/scratch/RtmpXjBb1x’   ‘~/tmp/scratch/RtmpY2zkw0’ ‘~/tmp/scratch/RtmpY5kD7R’   ‘~/tmp/scratch/RtmpYDgxCJ’ ‘~/tmp/scratch/RtmpYQzTEV’   ‘~/tmp/scratch/RtmpYeCUGE’ ‘~/tmp/scratch/RtmpYlFcnc’   ‘~/tmp/scratch/RtmpYtE4kG’ ‘~/tmp/scratch/RtmpaTaMix’   ‘~/tmp/scratch/RtmpamAfEs’ ‘~/tmp/scratch/RtmpapDtUP’   ‘~/tmp/scratch/Rtmpasug3f’ ‘~/tmp/scratch/RtmpazwgS5’   ‘~/tmp/scratch/RtmpbmIOFD’ ‘~/tmp/scratch/RtmpbsFRDa’   ‘~/tmp/scratch/Rtmpc6YUzZ’ ‘~/tmp/scratch/RtmpcbaYDe’   ‘~/tmp/scratch/RtmpeKxzLh’ ‘~/tmp/scratch/RtmpeNNOdP’   ‘~/tmp/scratch/RtmpeOqkYC’ ‘~/tmp/scratch/RtmpebaDw9’   ‘~/tmp/scratch/Rtmpf4sIb1’ ‘~/tmp/scratch/RtmpftiPuw’   ‘~/tmp/scratch/RtmpfudjVF’ ‘~/tmp/scratch/RtmpfyIKDf’   ‘~/tmp/scratch/Rtmpg5D2k9’ ‘~/tmp/scratch/RtmpgPVIWe’   ‘~/tmp/scratch/RtmpgfqY8d’ ‘~/tmp/scratch/RtmphIQnes’   ‘~/tmp/scratch/Rtmphhpuvr’ ‘~/tmp/scratch/Rtmpi4j1rZ’   ‘~/tmp/scratch/Rtmpi6DJgq’ ‘~/tmp/scratch/Rtmpj3hink’   ‘~/tmp/scratch/RtmpjEN4BD’ ‘~/tmp/scratch/RtmpjJ7KQS’   ‘~/tmp/scratch/RtmpjmAz0Z’ ‘~/tmp/scratch/RtmpjpzS0L’   ‘~/tmp/scratch/RtmpkocY1O’ ‘~/tmp/scratch/Rtmpl3JNnu’   ‘~/tmp/scratch/RtmplATeFv’ ‘~/tmp/scratch/RtmplCVnaN’   ‘~/tmp/scratch/RtmplJcIrl’ ‘~/tmp/scratch/Rtmpm3tTac’   ‘~/tmp/scratch/RtmpmUYh10’ ‘~/tmp/scratch/RtmpmVLyxK’   ‘~/tmp/scratch/RtmpmbsLJz’ ‘~/tmp/scratch/Rtmpmvv2tG’   ‘~/tmp/scratch/RtmpnwEGHQ’ ‘~/tmp/scratch/Rtmpo9kzBL’   ‘~/tmp/scratch/RtmpoWLLQ0’ ‘~/tmp/scratch/RtmpopTx9B’   ‘~/tmp/scratch/RtmppIGTSQ’ ‘~/tmp/scratch/Rtmppj7THL’   ‘~/tmp/scratch/RtmpptwiPH’ ‘~/tmp/scratch/RtmppzSrHw’   ‘~/tmp/scratch/RtmpqWJuA0’ ‘~/tmp/scratch/RtmprTSuQn’   ‘~/tmp/scratch/Rtmpsb4nLv’ ‘~/tmp/scratch/Rtmpsg0ICX’   ‘~/tmp/scratch/RtmptI0xCC’ ‘~/tmp/scratch/RtmptVSJVQ’   ‘~/tmp/scratch/Rtmptwuqoh’ ‘~/tmp/scratch/Rtmpvc3SE1’   ‘~/tmp/scratch/RtmpvyGxab’ ‘~/tmp/scratch/RtmpwOPn2d’   ‘~/tmp/scratch/RtmpwpnVXj’ ‘~/tmp/scratch/Rtmpx8hylF’   ‘~/tmp/scratch/Rtmpy1dq9a’ ‘~/tmp/scratch/RtmpyBSe90’   ‘~/tmp/scratch/RtmpyHaNxD’ ‘~/tmp/scratch/RtmpyItBTD’   ‘~/tmp/scratch/RtmpymCXib’ ‘~/tmp/scratch/RtmpyxArU2’   ‘~/tmp/scratch/RtmpzSrqHJ’ ‘~/tmp/scratch/Rtmpzec4P9’   ‘~/tmp/scratch/xvfb-run.0PeX1b’ ‘~/tmp/scratch/xvfb-run.1DovBd’   ‘~/tmp/scratch/xvfb-run.1J6xOc’ ‘~/tmp/scratch/xvfb-run.2VFA89’   ‘~/tmp/scratch/xvfb-run.2fvyAQ’ ‘~/tmp/scratch/xvfb-run.3STSLm’   ‘~/tmp/scratch/xvfb-run.4rWgTY’ ‘~/tmp/scratch/xvfb-run.6EqfXB’   ‘~/tmp/scratch/xvfb-run.6ccbIa’ ‘~/tmp/scratch/xvfb-run.7kvRd1’   ‘~/tmp/scratch/xvfb-run.8asFDC’ ‘~/tmp/scratch/xvfb-run.9lQIRR’   ‘~/tmp/scratch/xvfb-run.9zhijJ’ ‘~/tmp/scratch/xvfb-run.AcjvWW’   ‘~/tmp/scratch/xvfb-run.Bgubk9’ ‘~/tmp/scratch/xvfb-run.Bgy0eC’   ‘~/tmp/scratch/xvfb-run.D2Bh0K’ ‘~/tmp/scratch/xvfb-run.DM8ly8’   ‘~/tmp/scratch/xvfb-run.EtpGpn’ ‘~/tmp/scratch/xvfb-run.F0zMnv’   ‘~/tmp/scratch/xvfb-run.G0Zctm’ ‘~/tmp/scratch/xvfb-run.HAHROF’   ‘~/tmp/scratch/xvfb-run.HjdQMJ’ ‘~/tmp/scratch/xvfb-run.IDU3ZJ’   ‘~/tmp/scratch/xvfb-run.ILaVur’ ‘~/tmp/scratch/xvfb-run.JTMWga’   ‘~/tmp/scratch/xvfb-run.LhdyEl’ ‘~/tmp/scratch/xvfb-run.LmrUYq’   ‘~/tmp/scratch/xvfb-run.LrVvIH’ ‘~/tmp/scratch/xvfb-run.McvXFU’   ‘~/tmp/scratch/xvfb-run.NbueMI’ ‘~/tmp/scratch/xvfb-run.OW5RlO’   ‘~/tmp/scratch/xvfb-run.OYPDNb’ ‘~/tmp/scratch/xvfb-run.PNlBSG’   ‘~/tmp/scratch/xvfb-run.PkmRFU’ ‘~/tmp/scratch/xvfb-run.QBkDcw’   ‘~/tmp/scratch/xvfb-run.Qt5Fte’ ‘~/tmp/scratch/xvfb-run.RgQbjs’   ‘~/tmp/scratch/xvfb-run.VsLOGD’ ‘~/tmp/scratch/xvfb-run.Wy54fk’   ‘~/tmp/scratch/xvfb-run.Xf6dXo’ ‘~/tmp/scratch/xvfb-run.ZBqyCw’   ‘~/tmp/scratch/xvfb-run.ZSkGUB’ ‘~/tmp/scratch/xvfb-run.aQyjS9’   ‘~/tmp/scratch/xvfb-run.azSeBd’ ‘~/tmp/scratch/xvfb-run.b89Ywl’   ‘~/tmp/scratch/xvfb-run.cicTyp’ ‘~/tmp/scratch/xvfb-run.dfsrxx’   ‘~/tmp/scratch/xvfb-run.dua2p8’ ‘~/tmp/scratch/xvfb-run.fS2bRI’   ‘~/tmp/scratch/xvfb-run.fXxCTm’ ‘~/tmp/scratch/xvfb-run.h6L1DB’   ‘~/tmp/scratch/xvfb-run.hIyL5L’ ‘~/tmp/scratch/xvfb-run.hhPDCF’   ‘~/tmp/scratch/xvfb-run.iWedIa’ ‘~/tmp/scratch/xvfb-run.iWxlpQ’   ‘~/tmp/scratch/xvfb-run.k0kB9k’ ‘~/tmp/scratch/xvfb-run.kSCRcO’   ‘~/tmp/scratch/xvfb-run.n20irY’ ‘~/tmp/scratch/xvfb-run.ozP42e’   ‘~/tmp/scratch/xvfb-run.pPzjRt’ ‘~/tmp/scratch/xvfb-run.prQCSH’   ‘~/tmp/scratch/xvfb-run.qPq7u9’ ‘~/tmp/scratch/xvfb-run.rWm4kA’   ‘~/tmp/scratch/xvfb-run.rtZlzZ’ ‘~/tmp/scratch/xvfb-run.sia747’   ‘~/tmp/scratch/xvfb-run.tLx0mH’ ‘~/tmp/scratch/xvfb-run.tsXYvl’   ‘~/tmp/scratch/xvfb-run.x6eCZw’ ‘~/tmp/scratch/xvfb-run.xZUB8Y’   ‘~/tmp/scratch/xvfb-run.xhj0ql’ ‘~/tmp/scratch/xvfb-run.z31Z0X’   ‘~/tmp/scratch/xvfb-run.zeWYD4’   ‘/dev/shm/sm_segment.gimli1.1001.46f70000.0’   ‘~/.cache/pocl/uncached/tempfile_AlM4bk’
• DONE

Status: 1 NOTE