* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘RcppPlanc’ ...
** this is package ‘RcppPlanc’ version ‘2.0.13’
** package ‘RcppPlanc’ successfully unpacked and MD5 sums checked
** using staged installation
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc-14 - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++-14 - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
This is libplanc 1.0.2 containing component nmflib 1.0.1
-- Found R: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/bin/R (found version "R Under development (unstable) (2025-07-15 r88411) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under the terms of the
GNU General Public License versions 2 or 3.
For more information about these matters see
https://www.gnu.org/licenses/.
")
-- Could NOT find MKL (missing: MKL_DIR)
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Could NOT find OpenBLAS (missing: OpenBLAS_DIR)
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so
-- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so
-- Found R_HighFive: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HighFive
-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libcrypto.so;/usr/lib/x86_64-linux-gnu/libcurl.so;/usr/lib/x86_64-linux-gnu/libpthread.a;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.a;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.14.5") found components: C
-- Performing Test HDF5_LINKS
-- Performing Test HDF5_LINKS - Success
-- Found R_Rcpp: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp
-- Found R_RcppArmadillo: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo
-- Found R_RcppProgress: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress
-- Performing Test UNSAFE_MATH
-- Performing Test UNSAFE_MATH - Success
-- Performing Test FINITE_MATH
-- Performing Test FINITE_MATH - Success
-- Performing Test TRAPPING_MATH
-- Performing Test TRAPPING_MATH - Success
-- Performing Test ERRNO_MATH
-- Performing Test ERRNO_MATH - Success
-- Performing Test UNSIGNED_ZERO
-- Performing Test UNSIGNED_ZERO - Success
-- Performing Test RECIPROCAL_MATH
-- Performing Test RECIPROCAL_MATH - Success
-- Performing Test ARCH_AVX
-- Performing Test ARCH_AVX - Success
-- Performing Test HAS_POPCNT
-- Performing Test HAS_POPCNT - Success
-- Looking for cblas.h
-- Looking for cblas.h - found
-- A cache variable, namely HWLOC_DIR, has been set to specify the install directory of HWLOC
-- Checking for one of the modules 'hwloc'
-- Looking for HWLOC - found using PkgConfig
-- Found HWLOC: hwloc
-- Performing Test HAVE_HWLOC_PARENT_MEMBER
-- Performing Test HAVE_HWLOC_PARENT_MEMBER - Success
-- Performing Test HAVE_HWLOC_CACHE_ATTR
-- Performing Test HAVE_HWLOC_CACHE_ATTR - Success
-- Performing Test HAVE_HWLOC_OBJ_PU
-- Performing Test HAVE_HWLOC_OBJ_PU - Success
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- NNLS_SOURCE_DIR = /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nnls
-- NMF_SOURCE_DIR = /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf
-- NMFLIB_COMMON = /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Configuring done (8.2s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
R_SHLIB_EXT
-- Build files have been written to: /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build
./configure: 50: cannot create _deps/highfive-src/include/highfive/bits/H5Friends.hpp: Directory nonexistent
make[1]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
/usr/bin/cmake -S/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc -B/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/CMakeFiles /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
make -f CMakeFiles/utils.dir/build.make CMakeFiles/utils.dir/depend
make[3]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/CMakeFiles/utils.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
make -f CMakeFiles/utils.dir/build.make CMakeFiles/utils.dir/build
make[3]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
[ 11%] Building CXX object CMakeFiles/utils.dir/common/utils.cpp.o
/usr/bin/g++-14 -DUSING_R -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HighFive/include -I/usr/include/hdf5/serial -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -MD -MT CMakeFiles/utils.dir/common/utils.cpp.o -MF CMakeFiles/utils.dir/common/utils.cpp.o.d -o CMakeFiles/utils.dir/common/utils.cpp.o -c /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/utils.cpp
In file included from /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/utils.cpp:4:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/utils.hpp: In instantiation of ‘void makeSparse(double, T*) [with T = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/utils.cpp:69:30: required from here
69 | makeSparse<arma::mat>(sparsity, &W);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/utils.hpp:81:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
81 | for (int j = 0; j < X->n_cols; j++) {
| ~~^~~~~~~~~~~
make[3]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
[ 11%] Built target utils
make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/depend
make[3]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/CMakeFiles/hw_detect.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
make -f CMakeFiles/hw_detect.dir/build.make CMakeFiles/hw_detect.dir/build
make[3]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
[ 22%] Building C object CMakeFiles/hw_detect.dir/common/hw_detect.c.o
/usr/bin/gcc-14 -DUSING_R -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include -I/usr/local/include -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -O2 -g -DNDEBUG -std=gnu99 -fPIC -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT CMakeFiles/hw_detect.dir/common/hw_detect.c.o -MF CMakeFiles/hw_detect.dir/common/hw_detect.c.o.d -o CMakeFiles/hw_detect.dir/common/hw_detect.c.o -c /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/hw_detect.c
make[3]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
[ 22%] Built target hw_detect
make -f CMakeFiles/detect_blas.dir/build.make CMakeFiles/detect_blas.dir/depend
make[3]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/CMakeFiles/detect_blas.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
make -f CMakeFiles/detect_blas.dir/build.make CMakeFiles/detect_blas.dir/build
make[3]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
[ 33%] Building C object CMakeFiles/detect_blas.dir/common/detect_blas.c.o
/usr/bin/gcc-14 -DUSING_R -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include -I/usr/local/include -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -O2 -g -DNDEBUG -std=gnu99 -fPIC -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT CMakeFiles/detect_blas.dir/common/detect_blas.c.o -MF CMakeFiles/detect_blas.dir/common/detect_blas.c.o.d -o CMakeFiles/detect_blas.dir/common/detect_blas.c.o -c /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/detect_blas.c
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/detect_blas.c: In function ‘get_openblas_parallel’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/detect_blas.c:16:46: warning: ISO C forbids initialization between function pointer and ‘void *’ [-Wpedantic]
16 | const openblas_init_t parallel_address = dlsym(libloc, "openblas_get_parallel");
| ^~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/detect_blas.c: In function ‘get_openblas_set’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/detect_blas.c:21:40: warning: ISO C forbids initialization between function pointer and ‘void *’ [-Wpedantic]
21 | const openblas_set_t set_address = dlsym(libloc, "openblas_set_num_threads");
| ^~~~~
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[ 33%] Built target detect_blas
make -f nmf/CMakeFiles/nmflib.dir/build.make nmf/CMakeFiles/nmflib.dir/depend
make[3]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf/CMakeFiles/nmflib.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
make -f nmf/CMakeFiles/nmflib.dir/build.make nmf/CMakeFiles/nmflib.dir/build
make[3]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
[ 44%] Building CXX object nmf/CMakeFiles/nmflib.dir/nmf_lib.cpp.o
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf && /usr/bin/g++-14 -DUSING_R -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nnls -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HighFive/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT nmf/CMakeFiles/nmflib.dir/nmf_lib.cpp.o -MF CMakeFiles/nmflib.dir/nmf_lib.cpp.o.d -o CMakeFiles/nmflib.dir/nmf_lib.cpp.o -c /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.cpp
In file included from /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:5,
from /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.cpp:4:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:124:1: warning: multi-line comment [-Wcomment]
124 | // arma::mat* Hptr = this->Hi[i].get();\
| ^
In file included from /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:12:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp: In member function ‘void planc::INMF<T>::load_whole_E(arma::uword) [with T = planc::H5Mat; arma::uword = long long unsigned int]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:409:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
409 | if (numChunks * this->INMF_CHUNK_SIZE < n) numChunks++;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:413:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
413 | if (spanEnd > n - 1) spanEnd = n - 1;
| ~~~~~~~~^~~~~~~
In file included from /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:4:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘class planc::symmEmbeddedNMFDriver<arma::Mat<double> >’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:44:31: required from ‘static planc::nmfOutput<eT> planc::nmflib<T, eT>::symNMF(const T&, const arma::uword&, const arma::uword&, const double&, const std::string&, const int&, const arma::Mat<eTb>&) [with T = arma::Mat<double>; eT = double; arma::uword = long long unsigned int; std::string = std::__cxx11::basic_string<char>]’
44 | symmEmbeddedNMFDriver nmfRunner(options);
| ^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_types.inc:1:1: required from here
8 | template planc::nmfOutput<double> planc::nmflib<T, double>::symNMF(const T&x, const arma::uword&k, const arma::uword&niter, const double& lambda, const std::string&algo, const int&nCores, const arma::Mat<double>&Hinit);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:16:22: warning: ‘void planc::EmbeddedNMFDriver<T>::parseParams(const planc::internalParams<T>&) [with T = arma::Mat<double>]’ was hidden [-Woverloaded-virtual=]
16 | virtual void parseParams(const internalParams<T>&pc) {
| ^~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:73:14: note: by ‘void planc::symmEmbeddedNMFDriver<T>::parseParams(const planc::internalSymmParams<T>&) [with T = arma::Mat<double>]’
73 | void parseParams(const internalSymmParams<T>&pc) {
| ^~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘class planc::symmEmbeddedNMFDriver<arma::SpMat<double> >’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:44:31: required from ‘static planc::nmfOutput<eT> planc::nmflib<T, eT>::symNMF(const T&, const arma::uword&, const arma::uword&, const double&, const std::string&, const int&, const arma::Mat<eTb>&) [with T = arma::SpMat<double>; eT = double; arma::uword = long long unsigned int; std::string = std::__cxx11::basic_string<char>]’
44 | symmEmbeddedNMFDriver nmfRunner(options);
| ^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_types.inc:3:1: required from here
8 | template planc::nmfOutput<double> planc::nmflib<T, double>::symNMF(const T&x, const arma::uword&k, const arma::uword&niter, const double& lambda, const std::string&algo, const int&nCores, const arma::Mat<double>&Hinit);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:16:22: warning: ‘void planc::EmbeddedNMFDriver<T>::parseParams(const planc::internalParams<T>&) [with T = arma::SpMat<double>]’ was hidden [-Woverloaded-virtual=]
16 | virtual void parseParams(const internalParams<T>&pc) {
| ^~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:73:14: note: by ‘void planc::symmEmbeddedNMFDriver<T>::parseParams(const planc::internalSymmParams<T>&) [with T = arma::SpMat<double>]’
73 | void parseParams(const internalSymmParams<T>&pc) {
| ^~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double) [with T = arma::Mat<double>; arma::uword = long long unsigned int]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:57:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const int&) [with T = arma::Mat<double>; eT = double; arma::uword = long long unsigned int]’
57 | BPPINMF<T> solver(objectList, k, lambda);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
13 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:217:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
217 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T = arma::Mat<double>; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const int&) [with T = arma::Mat<double>; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
81 | BPPINMF<T> solver(objectList, k, lambda, HinitList, VinitList, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
14 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector<arma::mat> &HinitList, const std::vector<arma::mat> &VinitList, const arma::mat &Winit, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:235:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
235 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
In file included from /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:7:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF<T1>::ONLINEINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double) [with T1 = arma::Mat<double>; arma::uword = long long unsigned int]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:146:23: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::Mat<double>; eT = double; arma::uword = long long unsigned int]’
146 | ONLINEINMF<T> solver(matPtrVec, k, lambda);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:573:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
573 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF<T1>::ONLINEINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T1 = arma::Mat<double>; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:190:23: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::Mat<double>; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
190 | ONLINEINMF<T> solver(matPtrVec, k, lambda, Hinit, Vinit, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
17 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const std::vector<arma::mat> &Hinit, const std::vector<arma::mat> &Vinit, const arma::mat &Winit, const std::vector<arma::mat> &Ainit, const std::vector<arma::mat> &Binit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:606:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
606 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::setB(const std::vector<arma::Mat<double> >&) [with T1 = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:192:20: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::Mat<double>; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
192 | solver.setB(Binit);
| ~~~~~~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
17 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const std::vector<arma::mat> &Hinit, const std::vector<arma::mat> &Vinit, const arma::mat &Winit, const std::vector<arma::mat> &Ainit, const std::vector<arma::mat> &Binit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:704:41: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
704 | if (Binit[i].n_rows != this->m || Binit[i].n_cols != this->k) {
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF<T>::setW(const arma::mat&, bool) [with T = arma::Mat<double>; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:230:20: required from ‘static std::vector<arma::Mat<eTb> > planc::nmflib<T, eT>::oinmf_project(std::vector<std::shared_ptr<_Tp> >, const arma::mat&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&) [with T = arma::Mat<double>; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
230 | solver.setW(Winit, false);
| ~~~~~~~~~~~^~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
18 | template std::vector<arma::Mat<double>> planc::nmflib<T, double>::oinmf_project(std::vector<std::shared_ptr<T>> matPtrVec, const arma::mat &Winit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:281:57: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
281 | if (Winit.n_cols != this->k || Winit.n_rows != this->m) {
| ~~~~~~~~~~~~~^~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double) [with T = arma::SpMat<double>; arma::uword = long long unsigned int]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:57:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const int&) [with T = arma::SpMat<double>; eT = double; arma::uword = long long unsigned int]’
57 | BPPINMF<T> solver(objectList, k, lambda);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
13 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:217:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
217 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T = arma::SpMat<double>; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const int&) [with T = arma::SpMat<double>; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
81 | BPPINMF<T> solver(objectList, k, lambda, HinitList, VinitList, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
14 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector<arma::mat> &HinitList, const std::vector<arma::mat> &VinitList, const arma::mat &Winit, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:235:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
235 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF<T1>::ONLINEINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double) [with T1 = arma::SpMat<double>; arma::uword = long long unsigned int]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:146:23: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::SpMat<double>; eT = double; arma::uword = long long unsigned int]’
146 | ONLINEINMF<T> solver(matPtrVec, k, lambda);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:573:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
573 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF<T1>::ONLINEINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T1 = arma::SpMat<double>; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:190:23: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::SpMat<double>; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
190 | ONLINEINMF<T> solver(matPtrVec, k, lambda, Hinit, Vinit, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
17 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const std::vector<arma::mat> &Hinit, const std::vector<arma::mat> &Vinit, const arma::mat &Winit, const std::vector<arma::mat> &Ainit, const std::vector<arma::mat> &Binit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:606:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
606 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::setB(const std::vector<arma::Mat<double> >&) [with T1 = arma::SpMat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:192:20: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::SpMat<double>; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
192 | solver.setB(Binit);
| ~~~~~~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
17 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const std::vector<arma::mat> &Hinit, const std::vector<arma::mat> &Vinit, const arma::mat &Winit, const std::vector<arma::mat> &Ainit, const std::vector<arma::mat> &Binit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:704:41: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
704 | if (Binit[i].n_rows != this->m || Binit[i].n_cols != this->k) {
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF<T>::setW(const arma::mat&, bool) [with T = arma::SpMat<double>; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:230:20: required from ‘static std::vector<arma::Mat<eTb> > planc::nmflib<T, eT>::oinmf_project(std::vector<std::shared_ptr<_Tp> >, const arma::mat&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&) [with T = arma::SpMat<double>; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
230 | solver.setW(Winit, false);
| ~~~~~~~~~~~^~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
18 | template std::vector<arma::Mat<double>> planc::nmflib<T, double>::oinmf_project(std::vector<std::shared_ptr<T>> matPtrVec, const arma::mat &Winit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:281:57: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
281 | if (Winit.n_cols != this->k || Winit.n_rows != this->m) {
| ~~~~~~~~~~~~~^~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double) [with T = planc::H5Mat; arma::uword = long long unsigned int]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:57:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const int&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int]’
57 | BPPINMF<T> solver(objectList, k, lambda);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
13 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:217:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
217 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T = planc::H5Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const int&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
81 | BPPINMF<T> solver(objectList, k, lambda, HinitList, VinitList, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
14 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector<arma::mat> &HinitList, const std::vector<arma::mat> &VinitList, const arma::mat &Winit, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:235:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
235 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF<T1>::ONLINEINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double) [with T1 = planc::H5Mat; arma::uword = long long unsigned int]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:146:23: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int]’
146 | ONLINEINMF<T> solver(matPtrVec, k, lambda);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:573:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
573 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF<T1>::ONLINEINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T1 = planc::H5Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:190:23: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
190 | ONLINEINMF<T> solver(matPtrVec, k, lambda, Hinit, Vinit, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
17 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const std::vector<arma::mat> &Hinit, const std::vector<arma::mat> &Vinit, const arma::mat &Winit, const std::vector<arma::mat> &Ainit, const std::vector<arma::mat> &Binit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:606:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
606 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::setB(const std::vector<arma::Mat<double> >&) [with T1 = planc::H5Mat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:192:20: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
192 | solver.setB(Binit);
| ~~~~~~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
17 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const std::vector<arma::mat> &Hinit, const std::vector<arma::mat> &Vinit, const arma::mat &Winit, const std::vector<arma::mat> &Ainit, const std::vector<arma::mat> &Binit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:704:41: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
704 | if (Binit[i].n_rows != this->m || Binit[i].n_cols != this->k) {
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF<T>::setW(const arma::mat&, bool) [with T = planc::H5Mat; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:230:20: required from ‘static std::vector<arma::Mat<eTb> > planc::nmflib<T, eT>::oinmf_project(std::vector<std::shared_ptr<_Tp> >, const arma::mat&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&) [with T = planc::H5Mat; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
230 | solver.setW(Winit, false);
| ~~~~~~~~~~~^~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
18 | template std::vector<arma::Mat<double>> planc::nmflib<T, double>::oinmf_project(std::vector<std::shared_ptr<T>> matPtrVec, const arma::mat &Winit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:281:57: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
281 | if (Winit.n_cols != this->k || Winit.n_rows != this->m) {
| ~~~~~~~~~~~~~^~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double) [with T = planc::H5SpMat; arma::uword = long long unsigned int]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:57:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const int&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int]’
57 | BPPINMF<T> solver(objectList, k, lambda);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
13 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:217:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
217 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp: In instantiation of ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T = planc::H5SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const int&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
81 | BPPINMF<T> solver(objectList, k, lambda, HinitList, VinitList, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
14 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector<arma::mat> &HinitList, const std::vector<arma::mat> &VinitList, const arma::mat &Winit, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:235:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
235 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF<T1>::ONLINEINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:146:23: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int]’
146 | ONLINEINMF<T> solver(matPtrVec, k, lambda);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:573:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
573 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘planc::ONLINEINMF<T1>::ONLINEINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:190:23: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
190 | ONLINEINMF<T> solver(matPtrVec, k, lambda, Hinit, Vinit, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
17 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const std::vector<arma::mat> &Hinit, const std::vector<arma::mat> &Vinit, const arma::mat &Winit, const std::vector<arma::mat> &Ainit, const std::vector<arma::mat> &Binit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:606:29: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
606 | if (this->k > this->m) {
| ~~~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::setB(const std::vector<arma::Mat<double> >&) [with T1 = planc::H5SpMat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:192:20: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
192 | solver.setB(Binit);
| ~~~~~~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
17 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const std::vector<arma::mat> &Hinit, const std::vector<arma::mat> &Vinit, const arma::mat &Winit, const std::vector<arma::mat> &Ainit, const std::vector<arma::mat> &Binit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:704:41: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
704 | if (Binit[i].n_rows != this->m || Binit[i].n_cols != this->k) {
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF<T>::setW(const arma::mat&, bool) [with T = planc::H5SpMat; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:230:20: required from ‘static std::vector<arma::Mat<eTb> > planc::nmflib<T, eT>::oinmf_project(std::vector<std::shared_ptr<_Tp> >, const arma::mat&, std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&) [with T = planc::H5SpMat; eT = double; arma::mat = arma::Mat<double>; arma::uword = long long unsigned int]’
230 | solver.setW(Winit, false);
| ~~~~~~~~~~~^~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
18 | template std::vector<arma::Mat<double>> planc::nmflib<T, double>::oinmf_project(std::vector<std::shared_ptr<T>> matPtrVec, const arma::mat &Winit, std::vector<std::shared_ptr<T>> matPtrVecNew, const arma::uword &k, const int& nCores, const double &lambda); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:281:57: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
281 | if (Winit.n_cols != this->k || Winit.n_rows != this->m) {
| ~~~~~~~~~~~~~^~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘void planc::symmEmbeddedNMFDriver<T>::parseParams(const planc::internalSymmParams<T>&) [with T = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:86:19: required from ‘planc::symmEmbeddedNMFDriver<T>::symmEmbeddedNMFDriver(planc::internalSymmParams<T>) [with T = arma::Mat<double>]’
86 | this->parseParams(pc);
| ~~~~~~^~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:44:31: required from ‘static planc::nmfOutput<eT> planc::nmflib<T, eT>::symNMF(const T&, const arma::uword&, const arma::uword&, const double&, const std::string&, const int&, const arma::Mat<eTb>&) [with T = arma::Mat<double>; eT = double; arma::uword = long long unsigned int; std::string = std::__cxx11::basic_string<char>]’
44 | symmEmbeddedNMFDriver nmfRunner(options);
| ^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_types.inc:1:1: required from here
8 | template planc::nmfOutput<double> planc::nmflib<T, double>::symNMF(const T&x, const arma::uword&k, const arma::uword&niter, const double& lambda, const std::string&algo, const int&nCores, const arma::Mat<double>&Hinit);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:80:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
80 | if (this->m_k >= this->A.n_rows) std::throw_with_nested(
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘void planc::symmEmbeddedNMFDriver<T>::parseParams(const planc::internalSymmParams<T>&) [with T = arma::SpMat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:86:19: required from ‘planc::symmEmbeddedNMFDriver<T>::symmEmbeddedNMFDriver(planc::internalSymmParams<T>) [with T = arma::SpMat<double>]’
86 | this->parseParams(pc);
| ~~~~~~^~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:44:31: required from ‘static planc::nmfOutput<eT> planc::nmflib<T, eT>::symNMF(const T&, const arma::uword&, const arma::uword&, const double&, const std::string&, const int&, const arma::Mat<eTb>&) [with T = arma::SpMat<double>; eT = double; arma::uword = long long unsigned int; std::string = std::__cxx11::basic_string<char>]’
44 | symmEmbeddedNMFDriver nmfRunner(options);
| ^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_types.inc:3:1: required from here
8 | template planc::nmfOutput<double> planc::nmflib<T, double>::symNMF(const T&x, const arma::uword&k, const arma::uword&niter, const double& lambda, const std::string&algo, const int&nCores, const arma::Mat<double>&Hinit);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:80:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const long long unsigned int’} [-Wsign-compare]
80 | if (this->m_k >= this->A.n_rows) std::throw_with_nested(
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~
In file included from /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:6:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF<T>::solveU(int) [with T = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:364:23: required from ‘void planc::UINMF<T>::optimizeUANLS(arma::uword, bool, const int&) [with T = arma::Mat<double>; arma::uword = long long unsigned int]’
364 | this->solveU(ncores);
| ~~~~~~^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput<eT> planc::nmflib<T, eT>::uinmf(const std::vector<std::shared_ptr<_Tp> >&, const std::vector<std::shared_ptr<_Tp> >&, std::vector<int, std::allocator<int> >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = arma::Mat<double>; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col<double>]’
116 | solver.optimizeUANLS(niter, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
19 | template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:237:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
237 | if (numChunks * this->INMF_CHUNK_SIZE < this->u[uidx]) numChunks++;
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:242:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
242 | if (spanEnd > this->u[uidx] - 1) spanEnd = this->u[uidx] - 1;
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF<T>::solveW(int) [with T = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:365:23: required from ‘void planc::UINMF<T>::optimizeUANLS(arma::uword, bool, const int&) [with T = arma::Mat<double>; arma::uword = long long unsigned int]’
365 | this->solveW(ncores);
| ~~~~~~^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput<eT> planc::nmflib<T, eT>::uinmf(const std::vector<std::shared_ptr<_Tp> >&, const std::vector<std::shared_ptr<_Tp> >&, std::vector<int, std::allocator<int> >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = arma::Mat<double>; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col<double>]’
116 | solver.optimizeUANLS(niter, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
19 | template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:289:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
289 | for (int j = 0; j < this->nDatasets; ++j) {
| ~~^~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF<T>::solveU(int) [with T = arma::SpMat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:364:23: required from ‘void planc::UINMF<T>::optimizeUANLS(arma::uword, bool, const int&) [with T = arma::SpMat<double>; arma::uword = long long unsigned int]’
364 | this->solveU(ncores);
| ~~~~~~^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput<eT> planc::nmflib<T, eT>::uinmf(const std::vector<std::shared_ptr<_Tp> >&, const std::vector<std::shared_ptr<_Tp> >&, std::vector<int, std::allocator<int> >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = arma::SpMat<double>; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col<double>]’
116 | solver.optimizeUANLS(niter, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
19 | template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:237:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
237 | if (numChunks * this->INMF_CHUNK_SIZE < this->u[uidx]) numChunks++;
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:242:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
242 | if (spanEnd > this->u[uidx] - 1) spanEnd = this->u[uidx] - 1;
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF<T>::solveW(int) [with T = arma::SpMat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:365:23: required from ‘void planc::UINMF<T>::optimizeUANLS(arma::uword, bool, const int&) [with T = arma::SpMat<double>; arma::uword = long long unsigned int]’
365 | this->solveW(ncores);
| ~~~~~~^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput<eT> planc::nmflib<T, eT>::uinmf(const std::vector<std::shared_ptr<_Tp> >&, const std::vector<std::shared_ptr<_Tp> >&, std::vector<int, std::allocator<int> >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = arma::SpMat<double>; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col<double>]’
116 | solver.optimizeUANLS(niter, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
19 | template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:289:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
289 | for (int j = 0; j < this->nDatasets; ++j) {
| ~~^~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF<T>::solveU(int) [with T = planc::H5Mat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:364:23: required from ‘void planc::UINMF<T>::optimizeUANLS(arma::uword, bool, const int&) [with T = planc::H5Mat; arma::uword = long long unsigned int]’
364 | this->solveU(ncores);
| ~~~~~~^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput<eT> planc::nmflib<T, eT>::uinmf(const std::vector<std::shared_ptr<_Tp> >&, const std::vector<std::shared_ptr<_Tp> >&, std::vector<int, std::allocator<int> >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col<double>]’
116 | solver.optimizeUANLS(niter, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
19 | template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:237:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
237 | if (numChunks * this->INMF_CHUNK_SIZE < this->u[uidx]) numChunks++;
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:242:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
242 | if (spanEnd > this->u[uidx] - 1) spanEnd = this->u[uidx] - 1;
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF<T>::solveW(int) [with T = planc::H5Mat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:365:23: required from ‘void planc::UINMF<T>::optimizeUANLS(arma::uword, bool, const int&) [with T = planc::H5Mat; arma::uword = long long unsigned int]’
365 | this->solveW(ncores);
| ~~~~~~^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput<eT> planc::nmflib<T, eT>::uinmf(const std::vector<std::shared_ptr<_Tp> >&, const std::vector<std::shared_ptr<_Tp> >&, std::vector<int, std::allocator<int> >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col<double>]’
116 | solver.optimizeUANLS(niter, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
19 | template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:289:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
289 | for (int j = 0; j < this->nDatasets; ++j) {
| ~~^~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF<T>::solveU(int) [with T = planc::H5SpMat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:364:23: required from ‘void planc::UINMF<T>::optimizeUANLS(arma::uword, bool, const int&) [with T = planc::H5SpMat; arma::uword = long long unsigned int]’
364 | this->solveU(ncores);
| ~~~~~~^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput<eT> planc::nmflib<T, eT>::uinmf(const std::vector<std::shared_ptr<_Tp> >&, const std::vector<std::shared_ptr<_Tp> >&, std::vector<int, std::allocator<int> >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col<double>]’
116 | solver.optimizeUANLS(niter, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
19 | template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:237:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
237 | if (numChunks * this->INMF_CHUNK_SIZE < this->u[uidx]) numChunks++;
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:242:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
242 | if (spanEnd > this->u[uidx] - 1) spanEnd = this->u[uidx] - 1;
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp: In instantiation of ‘void planc::UINMF<T>::solveW(int) [with T = planc::H5SpMat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:365:23: required from ‘void planc::UINMF<T>::optimizeUANLS(arma::uword, bool, const int&) [with T = planc::H5SpMat; arma::uword = long long unsigned int]’
365 | this->solveW(ncores);
| ~~~~~~^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:116:29: required from ‘static planc::uinmfOutput<eT> planc::nmflib<T, eT>::uinmf(const std::vector<std::shared_ptr<_Tp> >&, const std::vector<std::shared_ptr<_Tp> >&, std::vector<int, std::allocator<int> >, const arma::uword&, const int&, const arma::vec&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int; arma::vec = arma::Col<double>]’
116 | solver.optimizeUANLS(niter, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
19 | template planc::uinmfOutput<double> planc::nmflib<T, double>::uinmf(const std::vector<std::shared_ptr<T>> &matPtrVec, const std::vector<std::shared_ptr<T>> &unsharedPtrVec, std::vector<int> whichUnshared, const arma::uword &k, const int& nCores, const arma::vec &lambda, const arma::uword &niter, const bool &verbose);
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/uinmf.hpp:289:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘long long unsigned int’} [-Wsign-compare]
289 | for (int j = 0; j < this->nDatasets; ++j) {
| ~~^~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF<T>::setV(const std::vector<arma::Mat<double> >&, bool) [with T = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:158:19: required from ‘planc::INMF<T>::INMF(std::vector<std::shared_ptr<_Tp> >, arma::uword, double, const std::vector<arma::Mat<double> >&, const arma::mat&, bool) [with T = arma::Mat<double>; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
158 | this->setV(VinitList);
| ~~~~~~^~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:233:116: required from ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T = arma::Mat<double>; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
233 | std::vector<arma::mat> VinitList, arma::mat Winit) : INMF<T>(Ei, k, lambda, VinitList, Winit, false) {
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const int&) [with T = arma::Mat<double>; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
81 | BPPINMF<T> solver(objectList, k, lambda, HinitList, VinitList, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
14 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector<arma::mat> &HinitList, const std::vector<arma::mat> &VinitList, const arma::mat &Winit, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:239:67: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
239 | if (Vinit[i].n_cols != this->k || Vinit[i].n_rows != this->m) {
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::updateW() [with T1 = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:479:27: required from ‘void planc::ONLINEINMF<T1>::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::Mat<double>; arma::uword = long long unsigned int]’
479 | this->updateW();
| ~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF<T1>::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::Mat<double>; arma::uword = long long unsigned int]’
751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores);
| ~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::Mat<double>; eT = double; arma::uword = long long unsigned int]’
147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:371:43: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
371 | for (arma::uword i = 0; i < this->m; i++) {
| ~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::updateV() [with T1 = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:480:27: required from ‘void planc::ONLINEINMF<T1>::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::Mat<double>; arma::uword = long long unsigned int]’
480 | this->updateV();
| ~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF<T1>::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::Mat<double>; arma::uword = long long unsigned int]’
751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores);
| ~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::Mat<double>; eT = double; arma::uword = long long unsigned int]’
147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:1:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:395:47: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
395 | for (arma::uword k = 0; k < this->m; k++) {
| ~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF<T>::setV(const std::vector<arma::Mat<double> >&, bool) [with T = arma::SpMat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:158:19: required from ‘planc::INMF<T>::INMF(std::vector<std::shared_ptr<_Tp> >, arma::uword, double, const std::vector<arma::Mat<double> >&, const arma::mat&, bool) [with T = arma::SpMat<double>; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
158 | this->setV(VinitList);
| ~~~~~~^~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:233:116: required from ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T = arma::SpMat<double>; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
233 | std::vector<arma::mat> VinitList, arma::mat Winit) : INMF<T>(Ei, k, lambda, VinitList, Winit, false) {
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const int&) [with T = arma::SpMat<double>; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
81 | BPPINMF<T> solver(objectList, k, lambda, HinitList, VinitList, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
14 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector<arma::mat> &HinitList, const std::vector<arma::mat> &VinitList, const arma::mat &Winit, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:239:67: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
239 | if (Vinit[i].n_cols != this->k || Vinit[i].n_rows != this->m) {
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::updateW() [with T1 = arma::SpMat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:479:27: required from ‘void planc::ONLINEINMF<T1>::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::SpMat<double>; arma::uword = long long unsigned int]’
479 | this->updateW();
| ~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF<T1>::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::SpMat<double>; arma::uword = long long unsigned int]’
751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores);
| ~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::SpMat<double>; eT = double; arma::uword = long long unsigned int]’
147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:371:43: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
371 | for (arma::uword i = 0; i < this->m; i++) {
| ~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::updateV() [with T1 = arma::SpMat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:480:27: required from ‘void planc::ONLINEINMF<T1>::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::SpMat<double>; arma::uword = long long unsigned int]’
480 | this->updateV();
| ~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF<T1>::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = arma::SpMat<double>; arma::uword = long long unsigned int]’
751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores);
| ~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = arma::SpMat<double>; eT = double; arma::uword = long long unsigned int]’
147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:3:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:395:47: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
395 | for (arma::uword k = 0; k < this->m; k++) {
| ~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF<T>::setV(const std::vector<arma::Mat<double> >&, bool) [with T = planc::H5Mat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:158:19: required from ‘planc::INMF<T>::INMF(std::vector<std::shared_ptr<_Tp> >, arma::uword, double, const std::vector<arma::Mat<double> >&, const arma::mat&, bool) [with T = planc::H5Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
158 | this->setV(VinitList);
| ~~~~~~^~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:233:116: required from ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T = planc::H5Mat; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
233 | std::vector<arma::mat> VinitList, arma::mat Winit) : INMF<T>(Ei, k, lambda, VinitList, Winit, false) {
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const int&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
81 | BPPINMF<T> solver(objectList, k, lambda, HinitList, VinitList, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
14 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector<arma::mat> &HinitList, const std::vector<arma::mat> &VinitList, const arma::mat &Winit, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:239:67: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
239 | if (Vinit[i].n_cols != this->k || Vinit[i].n_rows != this->m) {
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::updateW() [with T1 = planc::H5Mat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:479:27: required from ‘void planc::ONLINEINMF<T1>::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5Mat; arma::uword = long long unsigned int]’
479 | this->updateW();
| ~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF<T1>::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5Mat; arma::uword = long long unsigned int]’
751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores);
| ~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int]’
147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:371:43: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
371 | for (arma::uword i = 0; i < this->m; i++) {
| ~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::updateV() [with T1 = planc::H5Mat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:480:27: required from ‘void planc::ONLINEINMF<T1>::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5Mat; arma::uword = long long unsigned int]’
480 | this->updateV();
| ~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF<T1>::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5Mat; arma::uword = long long unsigned int]’
751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores);
| ~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5Mat; eT = double; arma::uword = long long unsigned int]’
147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:5:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:395:47: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
395 | for (arma::uword k = 0; k < this->m; k++) {
| ~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp: In instantiation of ‘void planc::INMF<T>::setV(const std::vector<arma::Mat<double> >&, bool) [with T = planc::H5SpMat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:158:19: required from ‘planc::INMF<T>::INMF(std::vector<std::shared_ptr<_Tp> >, arma::uword, double, const std::vector<arma::Mat<double> >&, const arma::mat&, bool) [with T = planc::H5SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
158 | this->setV(VinitList);
| ~~~~~~^~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppinmf.hpp:233:116: required from ‘planc::BPPINMF<T>::BPPINMF(std::vector<std::shared_ptr<_Tp> >&, arma::uword, double, std::vector<arma::Mat<double> >, std::vector<arma::Mat<double> >, arma::mat) [with T = planc::H5SpMat; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
233 | std::vector<arma::mat> VinitList, arma::mat Winit) : INMF<T>(Ei, k, lambda, VinitList, Winit, false) {
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:81:20: required from ‘static planc::inmfOutput<eT> planc::nmflib<T, eT>::bppinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const double&, const arma::uword&, const bool&, const std::vector<arma::Mat<double> >&, const std::vector<arma::Mat<double> >&, const arma::mat&, const int&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int; arma::mat = arma::Mat<double>]’
81 | BPPINMF<T> solver(objectList, k, lambda, HinitList, VinitList, Winit);
| ^~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
14 | template planc::inmfOutput<double> planc::nmflib<T, double>::bppinmf(std::vector<std::shared_ptr<T>> objectlist, const arma::uword &k, const double &lambda, const arma::uword &niter, const bool &verbose, const std::vector<arma::mat> &HinitList, const std::vector<arma::mat> &VinitList, const arma::mat &Winit, const int &nCores); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/inmf.hpp:239:67: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
239 | if (Vinit[i].n_cols != this->k || Vinit[i].n_rows != this->m) {
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::updateW() [with T1 = planc::H5SpMat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:479:27: required from ‘void planc::ONLINEINMF<T1>::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int]’
479 | this->updateW();
| ~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF<T1>::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int]’
751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores);
| ~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int]’
147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:371:43: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
371 | for (arma::uword i = 0; i < this->m; i++) {
| ~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp: In instantiation of ‘void planc::ONLINEINMF<T1>::updateV() [with T1 = planc::H5SpMat]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:480:27: required from ‘void planc::ONLINEINMF<T1>::solveHALS(arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int]’
480 | this->updateV();
| ~~~~~~^~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:751:19: required from ‘void planc::ONLINEINMF<T1>::runOnlineINMF(arma::uword, arma::uword, arma::uword, arma::uword, bool, const int&) [with T1 = planc::H5SpMat; arma::uword = long long unsigned int]’
751 | this->solveHALS(minibatchSize, inputmaxEpochs, maxHALSIter, verbose, ncores);
| ~~~~~~^~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:147:29: required from ‘static planc::oinmfOutput<eT> planc::nmflib<T, eT>::oinmf(std::vector<std::shared_ptr<_Tp> >, const arma::uword&, const int&, const double&, const arma::uword&, const arma::uword&, const arma::uword&, const arma::uword&, const bool&) [with T = planc::H5SpMat; eT = double; arma::uword = long long unsigned int]’
147 | solver.runOnlineINMF(minibatchSize, maxEpoch, maxHALSIter, permuteChunkSize, verbose, nCores);
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/inmf_types.inc:7:1: required from here
16 | template planc::oinmfOutput<double> planc::nmflib<T, double>::oinmf(std::vector<std::shared_ptr<T>> matPtrVec, const arma::uword &k, const int &nCores, const double &lambda, const arma::uword &maxEpoch, const arma::uword &minibatchSize, const arma::uword &maxHALSIter, const arma::uword &permuteChunkSize, const bool &verbose); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/onlineinmf.hpp:395:47: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
395 | for (arma::uword k = 0; k < this->m; k++) {
| ~~^~~~~~~~~
In file included from /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/NMFDriver.hpp:11,
from /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:7:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp: In instantiation of ‘void planc::BPPNMF<T>::updateOtherGivenOneMultipleRHS(const T&, const arma::mat&, char, arma::mat*, arma::fvec) [with T = arma::Mat<double>; arma::mat = arma::Mat<double>; arma::fvec = arma::Col<float>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:129:17: required from ‘void planc::BPPNMF<T>::commonSolve() [with T = arma::Mat<double>]’
129 | updateOtherGivenOneMultipleRHS(this->At, this->H, 'W', &(this->W),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:287:19: required from ‘void planc::BPPNMF<T>::computeNMF() [with T = arma::Mat<double>]’
287 | this->commonSolve();
| ~~~~~~^~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/NMFDriver.hpp:384:32: required from ‘void planc::NMFDriver<T>::CallNMF() [with NMFTYPE = planc::BPPNMF<arma::Mat<double> >; T = arma::Mat<double>]’
384 | nmfAlgorithm.computeNMF();
| ~~~~~~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/NMFDriver.hpp:317:39: required from ‘void planc::NMFDriver<T>::callNMF() [with T = arma::Mat<double>]’
317 | CallNMF<BPPNMF<T>>();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:245:22: required from ‘static int planc::nmflib<T, eT>::runNMF(const planc::params&) [with T = arma::Mat<double>; eT = double]’
245 | myNMF.callNMF();
| ~~~~~~~~~~~~~^~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_types.inc:1:1: required from here
6 | template int planc::nmflib<T, double>::runNMF(const planc::params& opts); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:64:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
64 | if (spanEnd > input.n_cols - 1) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:91:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::unique_ptr<BPPNNLS<arma::Mat<double>, arma::Col<double> > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
91 | for (int i = 0; i < subproblems.size(); i++) {
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:105:50: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::unique_ptr<BPPNNLS<arma::Mat<double>, arma::Col<double> > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
105 | for (int i = 0; i < subproblems.size(); i++) {
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp: In instantiation of ‘void planc::BPPNMF<T>::updateOtherGivenOneMultipleRHS(const T&, const arma::mat&, char, arma::mat*, arma::fvec) [with T = arma::SpMat<double>; arma::mat = arma::Mat<double>; arma::fvec = arma::Col<float>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:129:17: required from ‘void planc::BPPNMF<T>::commonSolve() [with T = arma::SpMat<double>]’
129 | updateOtherGivenOneMultipleRHS(this->At, this->H, 'W', &(this->W),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:287:19: required from ‘void planc::BPPNMF<T>::computeNMF() [with T = arma::SpMat<double>]’
287 | this->commonSolve();
| ~~~~~~^~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/NMFDriver.hpp:445:32: required from ‘void planc::NMFDriver<T>::CallNMF() [with NMFTYPE = planc::BPPNMF<arma::SpMat<double> >; T = arma::SpMat<double>]’
445 | nmfAlgorithm.computeNMF();
| ~~~~~~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/NMFDriver.hpp:317:39: required from ‘void planc::NMFDriver<T>::callNMF() [with T = arma::SpMat<double>]’
317 | CallNMF<BPPNMF<T>>();
| ~~~~~~~~~~~~~~~~~~^~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_lib.inl:245:22: required from ‘static int planc::nmflib<T, eT>::runNMF(const planc::params&) [with T = arma::SpMat<double>; eT = double]’
245 | myNMF.callNMF();
| ~~~~~~~~~~~~~^~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/nmf_types.inc:3:1: required from here
6 | template int planc::nmflib<T, double>::runNMF(const planc::params& opts); \
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:64:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
64 | if (spanEnd > input.n_cols - 1) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:91:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::unique_ptr<BPPNNLS<arma::Mat<double>, arma::Col<double> > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
91 | for (int i = 0; i < subproblems.size(); i++) {
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:105:50: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::unique_ptr<BPPNNLS<arma::Mat<double>, arma::Col<double> > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
105 | for (int i = 0; i < subproblems.size(); i++) {
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘void planc::EmbeddedNMFDriver<T>::loadWHInit(arma::mat&, arma::mat&) [with T = arma::SpMat<double>; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:24:14: required from here
24 | void loadWHInit(arma::mat&W, arma::mat&H) override {
| ^~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:27:55: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
27 | if (W.n_rows != this->m_m || W.n_cols != this->m_k) {
| ~~~~~~~~~^~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:38:55: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
38 | if (H.n_rows != this->m_n || H.n_cols != this->m_k) {
| ~~~~~~~~~^~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp: In instantiation of ‘void planc::EmbeddedNMFDriver<T>::loadWHInit(arma::mat&, arma::mat&) [with T = arma::Mat<double>; arma::mat = arma::Mat<double>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:24:14: required from here
24 | void loadWHInit(arma::mat&W, arma::mat&H) override {
| ^~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:27:55: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
27 | if (W.n_rows != this->m_m || W.n_cols != this->m_k) {
| ~~~~~~~~~^~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/EmbeddedNMFDriver.hpp:38:55: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const long long unsigned int’} and ‘int’ [-Wsign-compare]
38 | if (H.n_rows != this->m_n || H.n_cols != this->m_k) {
| ~~~~~~~~~^~~~~~~~~~~~
[ 55%] Building CXX object nmf/CMakeFiles/nmflib.dir/bppnmf.cpp.o
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf && /usr/bin/g++-14 -DUSING_R -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nnls -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HighFive/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT nmf/CMakeFiles/nmflib.dir/bppnmf.cpp.o -MF CMakeFiles/nmflib.dir/bppnmf.cpp.o.d -o CMakeFiles/nmflib.dir/bppnmf.cpp.o -c /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.cpp
In file included from /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.cpp:4:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp: In instantiation of ‘void planc::BPPNMF<T>::updateOtherGivenOneMultipleRHS(const T&, const arma::mat&, char, arma::mat*, arma::fvec) [with T = arma::SpMat<double>; arma::mat = arma::Mat<double>; arma::fvec = arma::Col<float>]’:
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:129:17: required from ‘void planc::BPPNMF<T>::commonSolve() [with T = arma::SpMat<double>]’
129 | updateOtherGivenOneMultipleRHS(this->At, this->H, 'W', &(this->W),
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.cpp:29:22: required from here
29 | this->commonSolve();
| ~~~~~~~~~~~~~~~~~^~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:64:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
64 | if (spanEnd > input.n_cols - 1) {
| ~~~~~~~~^~~~~~~~~~~~~~~~~~
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:91:54: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::unique_ptr<BPPNNLS<arma::Mat<double>, arma::Col<double> > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
91 | for (int i = 0; i < subproblems.size(); i++) {
| ^
/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nmf/bppnmf.hpp:105:50: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::unique_ptr<BPPNNLS<arma::Mat<double>, arma::Col<double> > > >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
105 | for (int i = 0; i < subproblems.size(); i++) {
| ^
[ 66%] Building CXX object nmf/CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf && /usr/bin/g++-14 -DUSING_R -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nnls -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HighFive/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT nmf/CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o -MF CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o.d -o CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o -c /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nnls/nnls_lib.cpp
[ 77%] Building CXX object nmf/CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf && /usr/bin/g++-14 -DUSING_R -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nnls -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HighFive/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT nmf/CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o -MF CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o.d -o CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o -c /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/parseutils.cpp
[ 88%] Building CXX object nmf/CMakeFiles/nmflib.dir/__/common/data.cpp.o
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf && /usr/bin/g++-14 -DUSING_R -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/nnls -I/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf -I/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HighFive/include -isystem /usr/include/hdf5/serial -I/usr/local/include -g -O2 -Wall -pedantic -mtune=native -O2 -g -DNDEBUG -fPIC -fvisibility-inlines-hidden -fopenmp -funsafe-math-optimizations -ffinite-math-only -fno-trapping-math -fno-math-errno -fno-signed-zeros -freciprocal-math -mavx -mpopcnt -MD -MT nmf/CMakeFiles/nmflib.dir/__/common/data.cpp.o -MF CMakeFiles/nmflib.dir/__/common/data.cpp.o.d -o CMakeFiles/nmflib.dir/__/common/data.cpp.o -c /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/planc/common/data.cpp
[100%] Linking CXX static library libnmflib.a
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf && /usr/bin/cmake -P CMakeFiles/nmflib.dir/cmake_clean_target.cmake
cd /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/nmf && /usr/bin/cmake -E cmake_link_script CMakeFiles/nmflib.dir/link.txt --verbose=1
/usr/bin/ar qc libnmflib.a CMakeFiles/nmflib.dir/nmf_lib.cpp.o CMakeFiles/nmflib.dir/bppnmf.cpp.o CMakeFiles/nmflib.dir/__/nnls/nnls_lib.cpp.o CMakeFiles/nmflib.dir/__/common/parseutils.cpp.o CMakeFiles/nmflib.dir/__/common/data.cpp.o ../CMakeFiles/utils.dir/common/utils.cpp.o ../CMakeFiles/hw_detect.dir/common/hw_detect.c.o ../CMakeFiles/detect_blas.dir/common/detect_blas.c.o
/usr/bin/ranlib libnmflib.a
make[3]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
[100%] Built target nmflib
make[2]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
/usr/bin/cmake -E cmake_progress_start /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build/CMakeFiles 0
make[1]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/build'
-- Install configuration: "RelWithDebInfo"
-- Installing: /tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src/libnmflib.a
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’
using C++17
make[1]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -Iplanc/common -Iplanc/nmf -Iplanc/nnls -Ibuild/_deps/highfive-src/include -Ibuild/nmf -DUSING_R -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HighFive/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -Iplanc/common -Iplanc/nmf -Iplanc/nnls -Ibuild/_deps/highfive-src/include -Ibuild/nmf -DUSING_R -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HighFive/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rcppplanc_nmf.cpp -o rcppplanc_nmf.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -Iplanc/common -Iplanc/nmf -Iplanc/nnls -Ibuild/_deps/highfive-src/include -Ibuild/nmf -DUSING_R -DHIGHFIVE_HAS_CONCEPTS=0 -DMPI_NO_CPPBIND -DRcppPlanc_EXPORTS -D_GNU_SOURCE -D_POSIX_C_SOURCE=200809L -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/HighFive/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rcppplanc_nnls.cpp -o rcppplanc_nnls.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o RcppPlanc.so RcppExports.o rcppplanc_nmf.o rcppplanc_nnls.o -L./ -lnmflib -fopenmp /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/libhwloc.so -L/usr/lib/x86_64-linux-gnu -lhwloc /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a /usr/lib/x86_64-linux-gnu/libm.so -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src'
make[1]: Entering directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src'
make[1]: Leaving directory '/tmp/RtmpNZ1Kd9/R.INSTALL3ffa5e472068c1/RcppPlanc/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-RcppPlanc/00new/RcppPlanc/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RcppPlanc)