Install log for 'Rcatch22'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘Rcatch22’ ...
** package ‘Rcatch22’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuPLEbK/R.INSTALL1919693129b5ad/Rcatch22/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c CO_AutoCorr.c -o CO_AutoCorr.o
CO_AutoCorr.c: In function ‘CO_trev_1_num’:
CO_AutoCorr.c:376:25: warning: argument 1 range [18446744056529682432, 18446744073709551608] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  376 |     double * diffTemp = malloc((size-1) * sizeof * diffTemp);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from CO_AutoCorr.c:4:
/usr/include/stdlib.h:553:14: note: in a call to allocation function ‘malloc’ declared here
  553 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
      |              ^~~~~~
CO_AutoCorr.c: In function ‘CO_HistogramAMI_even_2_5’:
CO_AutoCorr.c:410:19: warning: argument 1 range [18446744056529682432, 18446744073709551600] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  410 |     double * y1 = malloc((size-tau) * sizeof(double));
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/stdlib.h:553:14: note: in a call to allocation function ‘malloc’ declared here
  553 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
      |              ^~~~~~
CO_AutoCorr.c:411:19: warning: argument 1 range [18446744056529682432, 18446744073709551600] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
  411 |     double * y2 = malloc((size-tau) * sizeof(double));
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/stdlib.h:553:14: note: in a call to allocation function ‘malloc’ declared here
  553 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
      |              ^~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c DN_HistogramMode_10.c -o DN_HistogramMode_10.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c DN_HistogramMode_5.c -o DN_HistogramMode_5.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c DN_Mean.c -o DN_Mean.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c DN_OutlierInclude.c -o DN_OutlierInclude.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c DN_Spread_Std.c -o DN_Spread_Std.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c FC_LocalSimple.c -o FC_LocalSimple.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c IN_AutoMutualInfoStats.c -o IN_AutoMutualInfoStats.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c MD_hrv.c -o MD_hrv.o
MD_hrv.c: In function ‘MD_hrv_classic_pnn40’:
MD_hrv.c:26:19: warning: argument 1 range [18446744056529682432, 18446744073709551608] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   26 |     double * Dy = malloc((size-1) * sizeof(double));
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from stats.h:4,
                 from MD_hrv.c:10:
/usr/include/stdlib.h:553:14: note: in a call to allocation function ‘malloc’ declared here
  553 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
      |              ^~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c PD_PeriodicityWang.c -o PD_PeriodicityWang.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SB_BinaryStats.c -o SB_BinaryStats.o
SB_BinaryStats.c: In function ‘SB_BinaryStats_diff_longstretch0’:
SB_BinaryStats.c:24:18: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   24 |     int * yBin = malloc((size-1) * sizeof(int));
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from stats.h:4,
                 from SB_BinaryStats.c:10:
/usr/include/stdlib.h:553:14: note: in a call to allocation function ‘malloc’ declared here
  553 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
      |              ^~~~~~
SB_BinaryStats.c: In function ‘SB_BinaryStats_mean_longstretch1’:
SB_BinaryStats.c:66:18: warning: argument 1 range [18446744065119617024, 18446744073709551612] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
   66 |     int * yBin = malloc((size-1) * sizeof(int));
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/stdlib.h:553:14: note: in a call to allocation function ‘malloc’ declared here
  553 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
      |              ^~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SB_CoarseGrain.c -o SB_CoarseGrain.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SB_MotifThree.c -o SB_MotifThree.o
In file included from /usr/include/string.h:535,
                 from SB_MotifThree.c:2:
In function ‘memcpy’,
    inlined from ‘sb_motifthree’ at SB_MotifThree.c:248:17:
/usr/include/x86_64-linux-gnu/bits/string_fortified.h:29:10: warning: ‘tmp_ar’ may be used uninitialized [-Wmaybe-uninitialized]
   29 |   return __builtin___memcpy_chk (__dest, __src, __len,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   30 |                                  __glibc_objsize0 (__dest));
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~~
SB_MotifThree.c: In function ‘sb_motifthree’:
SB_MotifThree.c:157:11: note: ‘tmp_ar’ was declared here
  157 |     int * tmp_ar;
      |           ^~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SB_TransitionMatrix.c -o SB_TransitionMatrix.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SC_FluctAnal.c -o SC_FluctAnal.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c SP_Summaries.c -o SP_Summaries.o
In function ‘SP_Summaries_welch_rect’,
    inlined from ‘SP_Summaries_welch_rect’ at SP_Summaries.c:123:8:
SP_Summaries.c:165:18: warning: ‘w[1]’ may be used uninitialized [-Wmaybe-uninitialized]
  165 |     double dw = w[1] - w[0];
      |                 ~^~~
SP_Summaries.c:165:25: warning: ‘*w’ may be used uninitialized [-Wmaybe-uninitialized]
  165 |     double dw = w[1] - w[0];
      |                        ~^~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c butterworth.c -o butterworth.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c catch22.cpp -o catch22.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c fft.c -o fft.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c helper_functions.c -o helper_functions.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c histcounts.c -o histcounts.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c splinefit.c -o splinefit.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c stats.c -o stats.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o Rcatch22.so CO_AutoCorr.o DN_HistogramMode_10.o DN_HistogramMode_5.o DN_Mean.o DN_OutlierInclude.o DN_Spread_Std.o FC_LocalSimple.o IN_AutoMutualInfoStats.o MD_hrv.o PD_PeriodicityWang.o RcppExports.o SB_BinaryStats.o SB_CoarseGrain.o SB_MotifThree.o SB_TransitionMatrix.o SC_FluctAnal.o SP_Summaries.o butterworth.o catch22.o fft.o helper_functions.o histcounts.o splinefit.o stats.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuPLEbK/R.INSTALL1919693129b5ad/Rcatch22/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuPLEbK/R.INSTALL1919693129b5ad/Rcatch22/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuPLEbK/R.INSTALL1919693129b5ad/Rcatch22/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-Rcatch22/00new/Rcatch22/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcatch22)