• using R Under development (unstable) (2025-12-19 r89206)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘Rcan/DESCRIPTION’ ... OK
• this is package ‘Rcan’ version ‘1.3.92’
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘Rcan’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/14s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/2s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [2s/2s] ERROR Running examples in ‘Rcan-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: ICD_group_CI5 > ### Title: ICD10 group detailed example > ### Aliases: ICD_group_CI5 > ### Keywords: datasets > > ### ** Examples > > > > data(ICD_group_CI5) > data(data_individual_file) > > #group individual data by > # 5 year age group > # ICd grouping from dataframe ICD_group_CI5 > > df_data_icd <- csu_group_cases(data_individual_file, + var_age="age", + group_by=c("sex", "regcode", "reglabel"), + df_ICD = ICD_group_CI5, + var_ICD ="site") Warning in csu_group_cases(data_individual_file, var_age = "age", group_by = c("sex", :   Warning: 60 cases have age value > 150 and will be considered as unknown age Error in `[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data)) :   attempt access index 8/8 in VECTOR_ELT Calls: csu_group_cases -> core.csu_group_cases -> [ -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/7s] ERROR   Running ‘testthat.R’ [8s/6s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   >   >   > library(testthat)   > test_check("Rcan")   Loading required package: Rcan   Type example(Rcan) to see demo of the function.   Saving _problems/test-Rcan-13.R   Saving _problems/test-Rcan-34.R      Population with less than 18 age group:                registry_label nb_age_group                     <fctr> <num>    India, Chennai (Madras) 16            South Australia 17      ASR have been computed for the age group 0-99+   Cumulative risk have been computed for the age group 0-74   ASR have been computed for the age group 0-99+   Saving _problems/test-Rcan-122.R      Population with less than 18 age group:                     registry_label year nb_age_group                          <fctr> <int> <num>                 Brazil, Goiania 1988 17                 Brazil, Goiania 1989 17                 Brazil, Goiania 1990 17                 Brazil, Goiania 1991 17                 Brazil, Goiania 1992 17                             --- --- ---    USA, Georgia, Atlanta: Black 2003 17    USA, Georgia, Atlanta: Black 2004 17    USA, Georgia, Atlanta: Black 2005 17    USA, Georgia, Atlanta: Black 2006 17    USA, Georgia, Atlanta: Black 2007 17      ASR have been computed for the age group 0-99+   Saving _problems/test-Rcan-149.R   [ FAIL 4 | WARN 3 | SKIP 0 | PASS 3 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-Rcan.R:9:3'): Test csu_group_cases: 1 ──────────────────────────   Error in ``[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data))`: attempt access index 8/8 in VECTOR_ELT   Backtrace:       ▆    1. └─Rcan::csu_group_cases(...) at test-Rcan.R:9:3    2. └─Rcan:::core.csu_group_cases(...)    3. ├─dt_data[, `:=`(group_id, .GRP), by = key(dt_data)]    4. └─data.table:::`[.data.table`(...)   ── Error ('test-Rcan.R:29:3'): Test csu_merge_cases_pop: 1 ─────────────────────   Error in ``[.data.table`(dt_data, , `:=`(group_id, .GRP), by = key(dt_data))`: attempt access index 8/8 in VECTOR_ELT   Backtrace:       ▆    1. └─Rcan::csu_group_cases(...) at test-Rcan.R:29:3    2. └─Rcan:::core.csu_group_cases(...)    3. ├─dt_data[, `:=`(group_id, .GRP), by = key(dt_data)]    4. └─data.table:::`[.data.table`(...)   ── Error ('test-Rcan.R:120:3'): Test trend: 1 ──────────────────────────────────   Error in ``[.data.table`(dt_data, , `:=`(CSU_smooth, loess(CSU_T ~ CSU_Y, span = smoothing)$fitted), by = CSU_BY)`: attempt access index 7/7 in VECTOR_ELT   Backtrace:       ▆    1. └─Rcan::csu_time_trend(...) at test-Rcan.R:120:3    2. └─Rcan:::core.csu_time_trend(...)    3. ├─...[]    4. └─data.table:::`[.data.table`(...)   ── Error ('test-Rcan.R:147:3'): Test eapc: 1 ───────────────────────────────────   Error in ``[.data.table`(dt_data, , `:=`(id_group, .GRP), by = group_by)`: attempt access index 8/8 in VECTOR_ELT   Backtrace:       ▆    1. └─Rcan::csu_eapc(...) at test-Rcan.R:147:3    2. └─Rcan:::core.csu_eapc(...)    3. ├─dt_data[, `:=`(id_group, .GRP), by = group_by]    4. └─data.table:::`[.data.table`(...)      [ FAIL 4 | WARN 3 | SKIP 0 | PASS 3 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [3s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs