• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 12:42:32 UTC
• checking for file ‘Rankcluster/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘Rankcluster’ version ‘0.98.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Quentin Grimonprez <quentingrim@yahoo.fr>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘Rankcluster’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/7s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/9s] OK   Running ‘testthat.R’ [8s/9s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [6s/8s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Zorz6’ ‘~/tmp/scratch/Rtmp0vqT8t’   ‘~/tmp/scratch/Rtmp24xyi0’ ‘~/tmp/scratch/Rtmp2Cfc1K’   ‘~/tmp/scratch/Rtmp2Vbrj2’ ‘~/tmp/scratch/Rtmp2xUSMt’   ‘~/tmp/scratch/Rtmp3Qg5xN’ ‘~/tmp/scratch/Rtmp3jQACE’   ‘~/tmp/scratch/Rtmp3yr0C8’ ‘~/tmp/scratch/Rtmp4gbVVk’   ‘~/tmp/scratch/Rtmp4mtczH’ ‘~/tmp/scratch/Rtmp4xHARb’   ‘~/tmp/scratch/Rtmp5MaWbS’ ‘~/tmp/scratch/Rtmp6jZ8Q3’   ‘~/tmp/scratch/Rtmp7LlFzS’ ‘~/tmp/scratch/Rtmp7vsi4R’   ‘~/tmp/scratch/Rtmp8DuVHm’ ‘~/tmp/scratch/Rtmp8M95Af’   ‘~/tmp/scratch/Rtmp9axBh8’ ‘~/tmp/scratch/RtmpALPgIs’   ‘~/tmp/scratch/RtmpBC7W97’ ‘~/tmp/scratch/RtmpBsmB3f’   ‘~/tmp/scratch/RtmpCQAgaP’ ‘~/tmp/scratch/RtmpDMO5th’   ‘~/tmp/scratch/RtmpDQH833’ ‘~/tmp/scratch/RtmpDgOh6G’   ‘~/tmp/scratch/RtmpFEFHUc’ ‘~/tmp/scratch/RtmpFRYtq7’   ‘~/tmp/scratch/RtmpGhmddE’ ‘~/tmp/scratch/RtmpGjTZ6c’   ‘~/tmp/scratch/RtmpGl3BNm’ ‘~/tmp/scratch/RtmpHrdnzu’   ‘~/tmp/scratch/RtmpHw6IMk’ ‘~/tmp/scratch/RtmpIgdrX8’   ‘~/tmp/scratch/RtmpIvHW3t’ ‘~/tmp/scratch/RtmpKbILs6’   ‘~/tmp/scratch/RtmpKcIZhL’ ‘~/tmp/scratch/RtmpLQBHEz’   ‘~/tmp/scratch/RtmpMzkJhR’ ‘~/tmp/scratch/RtmpNLGKb8’   ‘~/tmp/scratch/RtmpNRYx8k’ ‘~/tmp/scratch/RtmpNicMvE’   ‘~/tmp/scratch/RtmpP20sqC’ ‘~/tmp/scratch/RtmpPFOwJX’   ‘~/tmp/scratch/RtmpPPMb8L’ ‘~/tmp/scratch/RtmpQMUQhi’   ‘~/tmp/scratch/RtmpQj396Y’ ‘~/tmp/scratch/RtmpRrVowl’   ‘~/tmp/scratch/RtmpRyXesX’ ‘~/tmp/scratch/RtmpS6Ry4W’   ‘~/tmp/scratch/RtmpSMEPiT’ ‘~/tmp/scratch/RtmpSvsBNq’   ‘~/tmp/scratch/RtmpT1Ly8M’ ‘~/tmp/scratch/RtmpTLOItL’   ‘~/tmp/scratch/RtmpTXCxXh’ ‘~/tmp/scratch/RtmpTo4oZc’   ‘~/tmp/scratch/RtmpUuJ2Bl’ ‘~/tmp/scratch/RtmpV227Eg’   ‘~/tmp/scratch/RtmpVEdgx0’ ‘~/tmp/scratch/RtmpVSXD9m’   ‘~/tmp/scratch/RtmpWMPDjp’ ‘~/tmp/scratch/RtmpWVBahz’   ‘~/tmp/scratch/RtmpYPTYUH’ ‘~/tmp/scratch/RtmpYmVY3l’   ‘~/tmp/scratch/RtmpYsnleO’ ‘~/tmp/scratch/RtmpZ9se1g’   ‘~/tmp/scratch/RtmpZFSBju’ ‘~/tmp/scratch/RtmpZM5sdu’   ‘~/tmp/scratch/RtmpZpROX4’ ‘~/tmp/scratch/Rtmpae0qki’   ‘~/tmp/scratch/Rtmpayiaub’   ‘~/tmp/scratch/Rtmpayiaub\LB12HL_AB.mzML.gz’   ‘~/tmp/scratch/Rtmpayiaub\LB12HL_AB.mzXML.gz’   ‘~/tmp/scratch/Rtmpayiaub\LB12HL_CD.mzML.gz’   ‘~/tmp/scratch/Rtmpayiaub\LB12HL_EF.mzML.gz’   ‘~/tmp/scratch/RtmpbSrgtf’ ‘~/tmp/scratch/RtmpclWVAL’   ‘~/tmp/scratch/RtmpcxHFQA’ ‘~/tmp/scratch/RtmpdkMzKs’   ‘~/tmp/scratch/RtmpehzZT4’ ‘~/tmp/scratch/RtmpemlZV4’   ‘~/tmp/scratch/RtmperKqyE’ ‘~/tmp/scratch/RtmpfKdumL’   ‘~/tmp/scratch/Rtmph2jZH5’ ‘~/tmp/scratch/RtmphtkMtL’   ‘~/tmp/scratch/Rtmpi87mNm’ ‘~/tmp/scratch/RtmpiR1sER’   ‘~/tmp/scratch/Rtmpjhcm14’ ‘~/tmp/scratch/RtmpjswZ5F’   ‘~/tmp/scratch/RtmpkYQeca’ ‘~/tmp/scratch/RtmplJwHnK’   ‘~/tmp/scratch/RtmpliBb12’ ‘~/tmp/scratch/Rtmplu38up’   ‘~/tmp/scratch/RtmpmIW33g’ ‘~/tmp/scratch/RtmpmWNrMr’   ‘~/tmp/scratch/Rtmpn0Exek’ ‘~/tmp/scratch/RtmpnWfngB’   ‘~/tmp/scratch/RtmpoReF6U’ ‘~/tmp/scratch/RtmpoRkfXh’   ‘~/tmp/scratch/RtmpoSd7Ss’ ‘~/tmp/scratch/RtmpoUhjs0’   ‘~/tmp/scratch/RtmpooeBhL’ ‘~/tmp/scratch/RtmpoqAgNJ’   ‘~/tmp/scratch/RtmppEz3j4’ ‘~/tmp/scratch/RtmppKbyiq’   ‘~/tmp/scratch/RtmppoKBar’ ‘~/tmp/scratch/Rtmpr8W9hi’   ‘~/tmp/scratch/RtmprbTeub’ ‘~/tmp/scratch/RtmprkINTd’   ‘~/tmp/scratch/Rtmps3iRgb’ ‘~/tmp/scratch/RtmpsGgJNC’   ‘~/tmp/scratch/Rtmpt5hz6U’ ‘~/tmp/scratch/Rtmpt6nLb8’   ‘~/tmp/scratch/RtmptLNpwh’ ‘~/tmp/scratch/RtmptPX81m’   ‘~/tmp/scratch/RtmptgNeJe’ ‘~/tmp/scratch/Rtmptquwtp’   ‘~/tmp/scratch/Rtmptzh9pR’ ‘~/tmp/scratch/RtmpuETTtu’   ‘~/tmp/scratch/RtmpuQMhCY’ ‘~/tmp/scratch/RtmpvdyLRC’   ‘~/tmp/scratch/RtmpvyC7Gr’ ‘~/tmp/scratch/RtmpwVkNJK’   ‘~/tmp/scratch/RtmpwjsXo6’ ‘~/tmp/scratch/RtmpxlJ2IY’   ‘~/tmp/scratch/Rtmpyb9Z1f’ ‘~/tmp/scratch/Rtmpyg4szf’   ‘~/tmp/scratch/RtmpzXipzj’ ‘~/tmp/scratch/ccpNj3TH.s’   ‘~/tmp/scratch/xvfb-run.0W6IwT’ ‘~/tmp/scratch/xvfb-run.0XJTrk’   ‘~/tmp/scratch/xvfb-run.0sWtl4’ ‘~/tmp/scratch/xvfb-run.3BvIgL’   ‘~/tmp/scratch/xvfb-run.3xCYSB’ ‘~/tmp/scratch/xvfb-run.5GJ9HW’   ‘~/tmp/scratch/xvfb-run.5HPJMH’ ‘~/tmp/scratch/xvfb-run.73pyn3’   ‘~/tmp/scratch/xvfb-run.7BBw3v’ ‘~/tmp/scratch/xvfb-run.7DsZMl’   ‘~/tmp/scratch/xvfb-run.7wSL0H’ ‘~/tmp/scratch/xvfb-run.7xAsDj’   ‘~/tmp/scratch/xvfb-run.8XSOBx’ ‘~/tmp/scratch/xvfb-run.8nUhSg’   ‘~/tmp/scratch/xvfb-run.BuvchG’ ‘~/tmp/scratch/xvfb-run.CFT4bn’   ‘~/tmp/scratch/xvfb-run.CvDbDd’ ‘~/tmp/scratch/xvfb-run.FkjIrd’   ‘~/tmp/scratch/xvfb-run.GXH9mN’ ‘~/tmp/scratch/xvfb-run.GmXqlK’   ‘~/tmp/scratch/xvfb-run.HL8WXY’ ‘~/tmp/scratch/xvfb-run.KCYLCy’   ‘~/tmp/scratch/xvfb-run.KcZobt’ ‘~/tmp/scratch/xvfb-run.KgNvgv’   ‘~/tmp/scratch/xvfb-run.LGCQrA’ ‘~/tmp/scratch/xvfb-run.MYja8a’   ‘~/tmp/scratch/xvfb-run.NHFTJ9’ ‘~/tmp/scratch/xvfb-run.ODRwHN’   ‘~/tmp/scratch/xvfb-run.PZ0cRr’ ‘~/tmp/scratch/xvfb-run.TWtjrS’   ‘~/tmp/scratch/xvfb-run.V8ocqS’ ‘~/tmp/scratch/xvfb-run.WRmNFF’   ‘~/tmp/scratch/xvfb-run.WpheOC’ ‘~/tmp/scratch/xvfb-run.Ww3onA’   ‘~/tmp/scratch/xvfb-run.atAiQa’ ‘~/tmp/scratch/xvfb-run.cGtbWY’   ‘~/tmp/scratch/xvfb-run.greVLH’ ‘~/tmp/scratch/xvfb-run.iBqseQ’   ‘~/tmp/scratch/xvfb-run.mkfJkk’ ‘~/tmp/scratch/xvfb-run.n9drw1’   ‘~/tmp/scratch/xvfb-run.qNrVpg’ ‘~/tmp/scratch/xvfb-run.sMf1IK’   ‘~/tmp/scratch/xvfb-run.u6Mwtb’ ‘~/tmp/scratch/xvfb-run.vVRi3t’
• DONE

Status: 2 NOTEs