- using R Under development (unstable) (2026-05-05 r90004)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.2.0-17) 15.2.0
GNU Fortran (Debian 15.2.0-17) 15.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-05-06 12:23:26 UTC
- checking for file ‘RFLPtools/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘RFLPtools’ version ‘2.0’
- checking CRAN incoming feasibility ... [1s/1s] NOTE
Maintainer: ‘Matthias Kohl <Matthias.Kohl@stamats.de>’
Package CITATION file contains call(s) to old-style personList() or
as.personList(). Please use c() on person objects instead.
- checking package namespace information ... OK
- checking package dependencies ... INFO
Package suggested but not available for checking: ‘MKomics’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘RFLPtools’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
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- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
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- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s/7s] OK
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- checking for missing documentation entries ... OK
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- checking contents of ‘data’ directory ... OK
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- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [0s/1s] ERROR
Running examples in ‘RFLPtools-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: RFLPtools-package
> ### Title: Tools To Analyse RFLP-Data
> ### Aliases: RFLPtools-package RFLPtools
> ### Keywords: package multivariate cluster
>
> ### ** Examples
>
> data(RFLPdata)
> res <- RFLPdist(RFLPdata)
> plot(hclust(res[[1]]), main = "Euclidean distance")
>
> par(mfrow = c(1,2))
> plot(hclust(RFLPdist(RFLPdata, nrBands = 3)), cex = 0.7)
> RFLPplot(RFLPdata, nrBands = 3, mar.bottom = 6, cex.axis = 0.8)
>
> data(RFLPref)
> RFLPrefplot(RFLPdata, RFLPref, nrBands = 6, cex.axis = 0.8)
>
>
> library(MKomics)
Error in library(MKomics) : there is no package called ‘MKomics’
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [1s/2s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘RFLPtools.Rmd’ using rmarkdown
Quitting from RFLPtools.Rmd:78-82 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'MKomics'
---
Backtrace:
▆
1. └─base::library(MKomics)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'RFLPtools.Rmd' failed with diagnostics:
there is no package called 'MKomics'
--- failed re-building ‘RFLPtools.Rmd’
SUMMARY: processing the following file failed:
‘RFLPtools.Rmd’
Error: Vignette re-building failed.
Execution halted
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- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 ERRORs, 1 NOTE