• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 12:44:22 UTC
• checking for file ‘PubMatrixR/DESCRIPTION’ ... OK
• this is package ‘PubMatrixR’ version ‘1.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PubMatrixR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/3s] OK   Running ‘testthat.R’ [2s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [6s/7s] OK
• checking PDF version of manual ... [3s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0bX09a’ ‘~/tmp/scratch/Rtmp1C5CVm’   ‘~/tmp/scratch/Rtmp1jaZKN’ ‘~/tmp/scratch/Rtmp2gwlPY’   ‘~/tmp/scratch/Rtmp2i6aft’ ‘~/tmp/scratch/Rtmp2ly1iO’   ‘~/tmp/scratch/Rtmp36JXA6’ ‘~/tmp/scratch/Rtmp4E19oT’   ‘~/tmp/scratch/Rtmp4U62Pf’ ‘~/tmp/scratch/Rtmp4lTSDi’   ‘~/tmp/scratch/Rtmp5HwBRi’ ‘~/tmp/scratch/Rtmp6CP5GH’   ‘~/tmp/scratch/Rtmp6FbYU6’ ‘~/tmp/scratch/Rtmp6Yz3s5’   ‘~/tmp/scratch/Rtmp70O7ST’ ‘~/tmp/scratch/Rtmp7FYOTx’   ‘~/tmp/scratch/Rtmp7pnUJg’ ‘~/tmp/scratch/Rtmp8IEiCC’   ‘~/tmp/scratch/Rtmp9Hi73j’ ‘~/tmp/scratch/RtmpAHeHn1’   ‘~/tmp/scratch/RtmpBZR9mY’ ‘~/tmp/scratch/RtmpCCDe7O’   ‘~/tmp/scratch/RtmpCIPAvP’ ‘~/tmp/scratch/RtmpDVlaFI’   ‘~/tmp/scratch/RtmpDjeBnT’ ‘~/tmp/scratch/RtmpELXmi1’   ‘~/tmp/scratch/RtmpEMcpjG’ ‘~/tmp/scratch/RtmpEscGsF’   ‘~/tmp/scratch/RtmpF1IQuD’ ‘~/tmp/scratch/RtmpFMkKro’   ‘~/tmp/scratch/RtmpGRwKp7’ ‘~/tmp/scratch/RtmpGZh8TD’   ‘~/tmp/scratch/RtmpGc5RIm’ ‘~/tmp/scratch/RtmpIWHIBZ’   ‘~/tmp/scratch/RtmpJwSNPS’ ‘~/tmp/scratch/RtmpLN3OI9’   ‘~/tmp/scratch/RtmpMYPMEq’ ‘~/tmp/scratch/RtmpMlT0uj’   ‘~/tmp/scratch/RtmpNqkfC9’ ‘~/tmp/scratch/RtmpOoawZs’   ‘~/tmp/scratch/RtmpOxq4oW’ ‘~/tmp/scratch/RtmpPItaxv’   ‘~/tmp/scratch/RtmpQF9N2o’ ‘~/tmp/scratch/RtmpRW1KKG’   ‘~/tmp/scratch/RtmpS57QnO’ ‘~/tmp/scratch/RtmpSL1myQ’   ‘~/tmp/scratch/RtmpT2yScc’ ‘~/tmp/scratch/RtmpUj31BU’   ‘~/tmp/scratch/RtmpVWOUjr’ ‘~/tmp/scratch/RtmpVh9Zy8’   ‘~/tmp/scratch/RtmpWUwEbb’ ‘~/tmp/scratch/RtmpWqKVH3’   ‘~/tmp/scratch/RtmpWqunAo’ ‘~/tmp/scratch/RtmpX3xq3i’   ‘~/tmp/scratch/RtmpYIW3OU’ ‘~/tmp/scratch/RtmpZ3dvpC’   ‘~/tmp/scratch/RtmpaQROWU’ ‘~/tmp/scratch/Rtmpawat1A’   ‘~/tmp/scratch/Rtmpb3JQCs’ ‘~/tmp/scratch/Rtmpcxg1Wm’   ‘~/tmp/scratch/Rtmpdw3spk’ ‘~/tmp/scratch/Rtmpf39zKz’   ‘~/tmp/scratch/RtmpfKjVqN’ ‘~/tmp/scratch/RtmpfxAVtE’   ‘~/tmp/scratch/RtmpgxzBCG’ ‘~/tmp/scratch/Rtmph33GXT’   ‘~/tmp/scratch/RtmphZk47O’ ‘~/tmp/scratch/Rtmpi0phxy’   ‘~/tmp/scratch/RtmpiYGxBL’ ‘~/tmp/scratch/RtmpiepPkj’   ‘~/tmp/scratch/RtmpisBWVt’ ‘~/tmp/scratch/Rtmpj93MkE’   ‘~/tmp/scratch/Rtmpk2hmEn’ ‘~/tmp/scratch/RtmpkCaY4Z’   ‘~/tmp/scratch/RtmpkvlaXE’ ‘~/tmp/scratch/RtmplkL4Qt’   ‘~/tmp/scratch/Rtmpmapo1q’ ‘~/tmp/scratch/RtmpmjYqnQ’   ‘~/tmp/scratch/RtmpnxwR37’ ‘~/tmp/scratch/Rtmpp2Bh6q’   ‘~/tmp/scratch/Rtmpp2xqCS’ ‘~/tmp/scratch/RtmppJ0Dj3’   ‘~/tmp/scratch/RtmppsqCSz’ ‘~/tmp/scratch/RtmprTfoev’   ‘~/tmp/scratch/Rtmps3GiF3’ ‘~/tmp/scratch/Rtmps4rLgL’   ‘~/tmp/scratch/RtmpsAKVK7’ ‘~/tmp/scratch/RtmpsNeGcw’   ‘~/tmp/scratch/RtmpsPgeUN’ ‘~/tmp/scratch/RtmpsjOjWW’   ‘~/tmp/scratch/Rtmpsryriq’ ‘~/tmp/scratch/RtmptCn90M’   ‘~/tmp/scratch/RtmptRMhyx’ ‘~/tmp/scratch/RtmpuaW6VN’   ‘~/tmp/scratch/Rtmpuz01Ck’ ‘~/tmp/scratch/RtmpvBRKio’   ‘~/tmp/scratch/RtmpvcSDgO’ ‘~/tmp/scratch/RtmpwKAToO’   ‘~/tmp/scratch/RtmpxXXMhO’ ‘~/tmp/scratch/Rtmpy1Z1Xb’   ‘~/tmp/scratch/Rtmpy3DOs6’ ‘~/tmp/scratch/RtmpyGIaHt’   ‘~/tmp/scratch/RtmpyQG4G9’ ‘~/tmp/scratch/RtmpyXAt2l’   ‘~/tmp/scratch/Rtmpyi8Qu4’ ‘~/tmp/scratch/RtmpyjVmSb’   ‘~/tmp/scratch/RtmpykSsR9’ ‘~/tmp/scratch/Rtmpz3jwWx’   ‘~/tmp/scratch/ccNSiamZ.s’ ‘~/tmp/scratch/xvfb-run.0IONNO’   ‘~/tmp/scratch/xvfb-run.1eINMP’ ‘~/tmp/scratch/xvfb-run.2IGGuX’   ‘~/tmp/scratch/xvfb-run.2PohPP’ ‘~/tmp/scratch/xvfb-run.4HKQ5h’   ‘~/tmp/scratch/xvfb-run.5CRSyl’ ‘~/tmp/scratch/xvfb-run.5PrrE0’   ‘~/tmp/scratch/xvfb-run.7SbHVO’ ‘~/tmp/scratch/xvfb-run.BRIw31’   ‘~/tmp/scratch/xvfb-run.CQqBiJ’ ‘~/tmp/scratch/xvfb-run.DTmiEo’   ‘~/tmp/scratch/xvfb-run.EBOENK’ ‘~/tmp/scratch/xvfb-run.Hgirpp’   ‘~/tmp/scratch/xvfb-run.I2w2gV’ ‘~/tmp/scratch/xvfb-run.LtWKwy’   ‘~/tmp/scratch/xvfb-run.N5ohU7’ ‘~/tmp/scratch/xvfb-run.SgFI8C’   ‘~/tmp/scratch/xvfb-run.WZJ15S’ ‘~/tmp/scratch/xvfb-run.X32zhh’   ‘~/tmp/scratch/xvfb-run.XP7xPg’ ‘~/tmp/scratch/xvfb-run.Yq12j0’   ‘~/tmp/scratch/xvfb-run.bzDr5q’ ‘~/tmp/scratch/xvfb-run.dPCdPX’   ‘~/tmp/scratch/xvfb-run.dc1v2a’ ‘~/tmp/scratch/xvfb-run.euB3Tx’   ‘~/tmp/scratch/xvfb-run.fQ9Hdl’ ‘~/tmp/scratch/xvfb-run.fh5hHd’   ‘~/tmp/scratch/xvfb-run.gX4ETL’ ‘~/tmp/scratch/xvfb-run.hjsKw2’   ‘~/tmp/scratch/xvfb-run.iXOiFc’ ‘~/tmp/scratch/xvfb-run.kEw32S’   ‘~/tmp/scratch/xvfb-run.mocVzh’ ‘~/tmp/scratch/xvfb-run.n4G4KH’   ‘~/tmp/scratch/xvfb-run.rmlJYu’ ‘~/tmp/scratch/xvfb-run.sZQ7Zf’   ‘~/tmp/scratch/xvfb-run.vnysq3’ ‘~/tmp/scratch/xvfb-run.w9Krdr’   ‘~/tmp/scratch/xvfb-run.ybYekL’ ‘~/tmp/scratch/xvfb-run.yuZye8’
• DONE

Status: 1 NOTE