• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 12:31:22 UTC
• checking for file ‘PubMatrixR/DESCRIPTION’ ... OK
• this is package ‘PubMatrixR’ version ‘1.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PubMatrixR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/3s] OK   Running ‘testthat.R’ [2s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [6s/7s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp1Le8LN’ ‘~/tmp/scratch/Rtmp1PjyjR’   ‘~/tmp/scratch/Rtmp1YDK3o’ ‘~/tmp/scratch/Rtmp2OIpdV’   ‘~/tmp/scratch/Rtmp2zbVcl’ ‘~/tmp/scratch/Rtmp3Jz6yr’   ‘~/tmp/scratch/Rtmp3RIthz’ ‘~/tmp/scratch/Rtmp4iVOfV’   ‘~/tmp/scratch/Rtmp58oEov’ ‘~/tmp/scratch/Rtmp5He5Vm’   ‘~/tmp/scratch/Rtmp5WA2SB’ ‘~/tmp/scratch/Rtmp7EZXRR’   ‘~/tmp/scratch/Rtmp8oV06O’ ‘~/tmp/scratch/Rtmp9Eps1A’   ‘~/tmp/scratch/Rtmp9X6S8F’ ‘~/tmp/scratch/RtmpA32EVY’   ‘~/tmp/scratch/RtmpARVhcY’ ‘~/tmp/scratch/RtmpBkpcVO’   ‘~/tmp/scratch/RtmpD2rCCb’ ‘~/tmp/scratch/RtmpDAhAKp’   ‘~/tmp/scratch/RtmpDzNUyY’ ‘~/tmp/scratch/RtmpEwq9Db’   ‘~/tmp/scratch/RtmpG7jlY3’ ‘~/tmp/scratch/RtmpHDkPL5’   ‘~/tmp/scratch/RtmpHDv5f4’ ‘~/tmp/scratch/RtmpIwbeXH’   ‘~/tmp/scratch/RtmpJ68s8P’ ‘~/tmp/scratch/RtmpJikvVu’   ‘~/tmp/scratch/RtmpJtmpLV’ ‘~/tmp/scratch/RtmpJwrDMO’   ‘~/tmp/scratch/RtmpKNyweV’ ‘~/tmp/scratch/RtmpKqCZz6’   ‘~/tmp/scratch/RtmpKuxYFu’ ‘~/tmp/scratch/RtmpLBZczY’   ‘~/tmp/scratch/RtmpLbbiFL’ ‘~/tmp/scratch/RtmpMReO9z’   ‘~/tmp/scratch/RtmpN5oNZs’ ‘~/tmp/scratch/RtmpN7qpr7’   ‘~/tmp/scratch/RtmpNTBtZJ’ ‘~/tmp/scratch/RtmpOaQsxO’   ‘~/tmp/scratch/RtmpOaoH3H’ ‘~/tmp/scratch/RtmpPH6A1q’   ‘~/tmp/scratch/RtmpQWLgqO’ ‘~/tmp/scratch/RtmpQiQGGs’   ‘~/tmp/scratch/RtmpRK945n’ ‘~/tmp/scratch/RtmpROFXEP’   ‘~/tmp/scratch/RtmpSr2fbn’ ‘~/tmp/scratch/RtmpT0z5y5’   ‘~/tmp/scratch/RtmpTcQRKH’ ‘~/tmp/scratch/RtmpTi6XML’   ‘~/tmp/scratch/RtmpU1gPaE’ ‘~/tmp/scratch/RtmpUKyQ0i’   ‘~/tmp/scratch/RtmpUXzrVx’ ‘~/tmp/scratch/RtmpVLGDPT’   ‘~/tmp/scratch/RtmpVQ1bvw’ ‘~/tmp/scratch/RtmpVbtP6U’   ‘~/tmp/scratch/RtmpVcUERE’ ‘~/tmp/scratch/RtmpWy82wg’   ‘~/tmp/scratch/RtmpXDkK4b’ ‘~/tmp/scratch/RtmpXOmId0’   ‘~/tmp/scratch/RtmpXWnoFK’ ‘~/tmp/scratch/RtmpXXFLrO’   ‘~/tmp/scratch/RtmpY9doqS’ ‘~/tmp/scratch/RtmpZuW4DE’   ‘~/tmp/scratch/RtmpaGLKAb’ ‘~/tmp/scratch/RtmpaL7SFQ’   ‘~/tmp/scratch/Rtmpb6CT2x’ ‘~/tmp/scratch/RtmpbnljBv’   ‘~/tmp/scratch/Rtmpc296Wm’ ‘~/tmp/scratch/Rtmpc6Yeuz’   ‘~/tmp/scratch/Rtmpczq76T’ ‘~/tmp/scratch/RtmpdHXGlv’   ‘~/tmp/scratch/RtmpdYz0z1’ ‘~/tmp/scratch/RtmpdqRltt’   ‘~/tmp/scratch/RtmpeYbszR’ ‘~/tmp/scratch/Rtmpel01aq’   ‘~/tmp/scratch/RtmpflMUT3’ ‘~/tmp/scratch/Rtmpgfi7wD’   ‘~/tmp/scratch/RtmpgkG3ny’ ‘~/tmp/scratch/Rtmpgo8hBE’   ‘~/tmp/scratch/RtmphAuObi’ ‘~/tmp/scratch/RtmphIFVRe’   ‘~/tmp/scratch/RtmphyhhRd’ ‘~/tmp/scratch/RtmpioNfOh’   ‘~/tmp/scratch/RtmpkNZG2S’ ‘~/tmp/scratch/Rtmpl94dte’   ‘~/tmp/scratch/RtmplZ2Y6X’ ‘~/tmp/scratch/Rtmpm3Owba’   ‘~/tmp/scratch/RtmpmrtG4i’ ‘~/tmp/scratch/RtmpnOr2Qe’   ‘~/tmp/scratch/RtmpoJHXVV’ ‘~/tmp/scratch/RtmpokpJ1A’   ‘~/tmp/scratch/RtmppY0EsM’ ‘~/tmp/scratch/RtmppcPltT’   ‘~/tmp/scratch/RtmppgpYyn’ ‘~/tmp/scratch/RtmprynHDZ’   ‘~/tmp/scratch/RtmpsFmeBh’ ‘~/tmp/scratch/RtmpsGVcU7’   ‘~/tmp/scratch/RtmpsflMKS’ ‘~/tmp/scratch/RtmpsxuDlO’   ‘~/tmp/scratch/Rtmpt1vZzn’ ‘~/tmp/scratch/RtmpuYb1MB’   ‘~/tmp/scratch/RtmpufP4PT’ ‘~/tmp/scratch/RtmpvIGPwo’   ‘~/tmp/scratch/RtmpvWzgfa’ ‘~/tmp/scratch/RtmpvpQVdN’   ‘~/tmp/scratch/RtmpwDFiG5’ ‘~/tmp/scratch/RtmpwxIPG2’   ‘~/tmp/scratch/RtmpxKiLu0’ ‘~/tmp/scratch/RtmpxkoKGN’   ‘~/tmp/scratch/RtmpyniwvD’ ‘~/tmp/scratch/RtmpzZqFL3’   ‘~/tmp/scratch/RtmpzhK7t9’ ‘~/tmp/scratch/Rtmpzl40r4’   ‘~/tmp/scratch/cclWGaC4.s’ ‘~/tmp/scratch/xvfb-run.09qult’   ‘~/tmp/scratch/xvfb-run.0KWX6x’ ‘~/tmp/scratch/xvfb-run.1A9wQM’   ‘~/tmp/scratch/xvfb-run.2jBvxV’ ‘~/tmp/scratch/xvfb-run.4BprZ5’   ‘~/tmp/scratch/xvfb-run.8PGVCQ’ ‘~/tmp/scratch/xvfb-run.9a0hMT’   ‘~/tmp/scratch/xvfb-run.9zffqM’ ‘~/tmp/scratch/xvfb-run.Awl1pv’   ‘~/tmp/scratch/xvfb-run.EWJSll’ ‘~/tmp/scratch/xvfb-run.Ggi2ZR’   ‘~/tmp/scratch/xvfb-run.MYRm3T’ ‘~/tmp/scratch/xvfb-run.Ooknvs’   ‘~/tmp/scratch/xvfb-run.Rgq88I’ ‘~/tmp/scratch/xvfb-run.SimEDg’   ‘~/tmp/scratch/xvfb-run.VdGfM8’ ‘~/tmp/scratch/xvfb-run.VeqI6F’   ‘~/tmp/scratch/xvfb-run.XKOAdX’ ‘~/tmp/scratch/xvfb-run.cbglLu’   ‘~/tmp/scratch/xvfb-run.ccjjJd’ ‘~/tmp/scratch/xvfb-run.dnkt5c’   ‘~/tmp/scratch/xvfb-run.iJmGsV’ ‘~/tmp/scratch/xvfb-run.iRnT6L’   ‘~/tmp/scratch/xvfb-run.jdVX5E’ ‘~/tmp/scratch/xvfb-run.k6VkQE’   ‘~/tmp/scratch/xvfb-run.mhss3j’ ‘~/tmp/scratch/xvfb-run.muj4nT’   ‘~/tmp/scratch/xvfb-run.pH7Ryc’ ‘~/tmp/scratch/xvfb-run.pa5UjQ’   ‘~/tmp/scratch/xvfb-run.pndUB6’ ‘~/tmp/scratch/xvfb-run.qo7dAp’   ‘~/tmp/scratch/xvfb-run.t3yLq6’ ‘~/tmp/scratch/xvfb-run.tLh7O4’   ‘~/tmp/scratch/xvfb-run.tTgZjU’ ‘~/tmp/scratch/xvfb-run.wclIOD’   ‘~/tmp/scratch/xvfb-run.yRDb6J’ ‘~/tmp/scratch/xvfb-run.zWQuyp’
• DONE

Status: 1 NOTE