• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 12:32:06 UTC
• checking for file ‘PresenceAbsence/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PresenceAbsence’ version ‘1.1.11’
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Elizabeth Freeman <elizabeth.a.freeman@usda.gov>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: person(given = "Elizabeth",                     family = "Freeman",                     role = c("aut", "cre"),                     email = "elizabeth.a.freeman@usda.gov") as necessary. Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘PresenceAbsence’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/10s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘demo’ ... OK
• checking PDF version of manual ... [6s/9s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0JDQwo’ ‘~/tmp/scratch/Rtmp1Wlwbl’   ‘~/tmp/scratch/Rtmp1hCMdE’ ‘~/tmp/scratch/Rtmp1rB1A2’   ‘~/tmp/scratch/Rtmp2ZnbpP’ ‘~/tmp/scratch/Rtmp2bmMOA’   ‘~/tmp/scratch/Rtmp2j74nz’ ‘~/tmp/scratch/Rtmp3YarbZ’   ‘~/tmp/scratch/Rtmp4Neibr’ ‘~/tmp/scratch/Rtmp4r9cuq’   ‘~/tmp/scratch/Rtmp52z1OE’ ‘~/tmp/scratch/Rtmp5WP0oG’   ‘~/tmp/scratch/Rtmp5pgR3x’ ‘~/tmp/scratch/Rtmp9M3baP’   ‘~/tmp/scratch/Rtmp9m9cOA’ ‘~/tmp/scratch/RtmpATMblh’   ‘~/tmp/scratch/RtmpBv104a’ ‘~/tmp/scratch/RtmpC6w86h’   ‘~/tmp/scratch/RtmpD09NOv’ ‘~/tmp/scratch/RtmpDKx7Ne’   ‘~/tmp/scratch/RtmpEUQXaC’ ‘~/tmp/scratch/RtmpEvVF3f’   ‘~/tmp/scratch/RtmpFImQT9’ ‘~/tmp/scratch/RtmpFOIdKN’   ‘~/tmp/scratch/RtmpFVwvrt’ ‘~/tmp/scratch/RtmpFpqdN5’   ‘~/tmp/scratch/RtmpHB2gOF’ ‘~/tmp/scratch/RtmpHTgaa7’   ‘~/tmp/scratch/RtmpI8aKlO’ ‘~/tmp/scratch/RtmpIK2u5Z’   ‘~/tmp/scratch/RtmpJhEwPQ’ ‘~/tmp/scratch/RtmpKQHeEH’   ‘~/tmp/scratch/RtmpMix4ZY’ ‘~/tmp/scratch/RtmpNfWGsL’   ‘~/tmp/scratch/RtmpOBnzIX’ ‘~/tmp/scratch/RtmpOQNchG’   ‘~/tmp/scratch/RtmpOuUmQy’ ‘~/tmp/scratch/RtmpQPRXXL’   ‘~/tmp/scratch/RtmpQQaot1’ ‘~/tmp/scratch/RtmpQYfD5Q’   ‘~/tmp/scratch/RtmpQerxa3’ ‘~/tmp/scratch/RtmpRGMTKh’   ‘~/tmp/scratch/RtmpRjDaJg’ ‘~/tmp/scratch/RtmpRz4iY4’   ‘~/tmp/scratch/RtmpTbhvou’ ‘~/tmp/scratch/RtmpU8UnKp’   ‘~/tmp/scratch/RtmpUFBauu’ ‘~/tmp/scratch/RtmpUj2KBK’   ‘~/tmp/scratch/RtmpV5JPZg’ ‘~/tmp/scratch/RtmpV64KJo’   ‘~/tmp/scratch/RtmpVxhpSF’ ‘~/tmp/scratch/RtmpW617pC’   ‘~/tmp/scratch/RtmpWsOM29’ ‘~/tmp/scratch/RtmpXk48rD’   ‘~/tmp/scratch/RtmpY2wNkq’ ‘~/tmp/scratch/RtmpY4Uh1C’   ‘~/tmp/scratch/RtmpYJUxgM’ ‘~/tmp/scratch/RtmpYi6MXW’   ‘~/tmp/scratch/RtmpYzdisb’ ‘~/tmp/scratch/RtmpZE3krl’   ‘~/tmp/scratch/RtmpZXMctW’ ‘~/tmp/scratch/RtmpaWBAiu’   ‘~/tmp/scratch/RtmpbkDcqZ’ ‘~/tmp/scratch/RtmpboTPhX’   ‘~/tmp/scratch/Rtmpbsi2cw’ ‘~/tmp/scratch/RtmpctqeXM’   ‘~/tmp/scratch/Rtmpd1SNgw’ ‘~/tmp/scratch/RtmpdLwhQj’   ‘~/tmp/scratch/RtmpdfEstP’ ‘~/tmp/scratch/RtmpduXwRt’   ‘~/tmp/scratch/RtmpebR94I’ ‘~/tmp/scratch/RtmpeiuOI7’   ‘~/tmp/scratch/Rtmpewl85s’ ‘~/tmp/scratch/RtmpgOkzR6’   ‘~/tmp/scratch/RtmpgtKwNc’ ‘~/tmp/scratch/RtmphOeD7o’   ‘~/tmp/scratch/Rtmpj4JfId’ ‘~/tmp/scratch/RtmpkIYADX’   ‘~/tmp/scratch/RtmpknT3R5’ ‘~/tmp/scratch/RtmplnZGTx’   ‘~/tmp/scratch/RtmplyFpKl’ ‘~/tmp/scratch/RtmpmZPE0D’   ‘~/tmp/scratch/RtmpnIjnYK’ ‘~/tmp/scratch/Rtmpng9qUz’   ‘~/tmp/scratch/RtmppxeYzf’ ‘~/tmp/scratch/RtmpqPmVEp’   ‘~/tmp/scratch/Rtmpr5QAnL’ ‘~/tmp/scratch/RtmprGMWyT’   ‘~/tmp/scratch/Rtmps0nlxx’ ‘~/tmp/scratch/Rtmpsa5i7t’   ‘~/tmp/scratch/Rtmpsh5y2b’ ‘~/tmp/scratch/RtmptkUIbs’   ‘~/tmp/scratch/RtmptoJc1S’ ‘~/tmp/scratch/Rtmpu9sAUF’   ‘~/tmp/scratch/RtmpulsjCF’ ‘~/tmp/scratch/RtmpvHdQ2J’   ‘~/tmp/scratch/Rtmpvm2zrY’ ‘~/tmp/scratch/RtmpwIA3wy’   ‘~/tmp/scratch/RtmpwIkXmm’ ‘~/tmp/scratch/RtmpxCXB5h’   ‘~/tmp/scratch/cc1AG0JI.s’ ‘~/tmp/scratch/ccTh6by5.s’   ‘~/tmp/scratch/xvfb-run.4d3Q7K’ ‘~/tmp/scratch/xvfb-run.6Og1yy’   ‘~/tmp/scratch/xvfb-run.7fT6Ml’ ‘~/tmp/scratch/xvfb-run.9ehB2w’   ‘~/tmp/scratch/xvfb-run.CrBTOQ’ ‘~/tmp/scratch/xvfb-run.DOKYxY’   ‘~/tmp/scratch/xvfb-run.IiroPR’ ‘~/tmp/scratch/xvfb-run.Mkde5n’   ‘~/tmp/scratch/xvfb-run.NYaLTH’ ‘~/tmp/scratch/xvfb-run.Nssp8O’   ‘~/tmp/scratch/xvfb-run.R2zsvx’ ‘~/tmp/scratch/xvfb-run.SNZI2a’   ‘~/tmp/scratch/xvfb-run.Ti7sMu’ ‘~/tmp/scratch/xvfb-run.UDUudv’   ‘~/tmp/scratch/xvfb-run.UGd16X’ ‘~/tmp/scratch/xvfb-run.WJQZFg’   ‘~/tmp/scratch/xvfb-run.Y1xD2G’ ‘~/tmp/scratch/xvfb-run.YBSZRz’   ‘~/tmp/scratch/xvfb-run.ZxCNLZ’ ‘~/tmp/scratch/xvfb-run.cLLBN0’   ‘~/tmp/scratch/xvfb-run.dNXOT0’ ‘~/tmp/scratch/xvfb-run.fDdJXR’   ‘~/tmp/scratch/xvfb-run.gRFqd2’ ‘~/tmp/scratch/xvfb-run.gwXOHZ’   ‘~/tmp/scratch/xvfb-run.idPpIK’ ‘~/tmp/scratch/xvfb-run.k1Yhzp’   ‘~/tmp/scratch/xvfb-run.nA30fr’ ‘~/tmp/scratch/xvfb-run.oO6RQt’   ‘~/tmp/scratch/xvfb-run.ojXiNj’ ‘~/tmp/scratch/xvfb-run.wcywf3’
• DONE

Status: 2 NOTEs