• using R Under development (unstable) (2025-10-20 r88955)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-4) 15.2.0     GNU Fortran (Debian 15.2.0-4) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘PointedSDMs/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PointedSDMs’ version ‘2.1.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘INLA’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PointedSDMs’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [9s/11s] OK
• checking whether the package can be loaded with stated dependencies ... [9s/14s] OK
• checking whether the package can be unloaded cleanly ... [9s/12s] OK
• checking whether the namespace can be loaded with stated dependencies ... [8s/11s] OK
• checking whether the namespace can be unloaded cleanly ... [9s/12s] OK
• checking loading without being on the library search path ... [9s/12s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [44s/57s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... INFO Package unavailable to check Rd xrefs: ‘INLA’
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/2s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/10s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [9s/12s] OK   Running ‘testthat.R’ [9s/12s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [25s/40s] OK
• checking PDF version of manual ... [7s/10s] OK
• checking HTML version of manual ... [2s/4s] NOTE Found the following HTML validation problems: dataOrganize.html:241:1 (dataOrganize.Rd:156): Warning: missing </ul> before </div> dataOrganize.html:96:1 (dataOrganize.Rd:49): Warning: <h5> anchor "Usage" already defined dataOrganize.html:110:1 (dataOrganize.Rd:58): Warning: <h5> anchor "Usage" already defined dataOrganize.html:124:1 (dataOrganize.Rd:67): Warning: <h5> anchor "Usage" already defined dataOrganize.html:157:1 (dataOrganize.Rd:95): Warning: <h5> anchor "Usage" already defined dataOrganize.html:195:1 (dataOrganize.Rd:128): Warning: <h5> anchor "Usage" already defined dataOrganize.html:218:1 (dataOrganize.Rd:145): Warning: <h5> anchor "Usage" already defined makeLhoods.html:103:1 (makeLhoods.Rd:45): Warning: missing </ul> before </div> nearestValue.html:54:1 (nearestValue.Rd:14): Warning: missing </ul> before </div> print.blockedCV.html:51:1 (print.blockedCV.Rd:12): Warning: missing </ul> before </div> print.blockedCVpred.html:51:1 (print.blockedCVpred.Rd:12): Warning: missing </ul> before </div> print.bruSDM.html:51:1 (print.bruSDM.Rd:12): Warning: missing </ul> before </div> print.bruSDM_predict.html:51:1 (print.bruSDM_predict.Rd:12): Warning: missing </ul> before </div> print.datasetOut.html:51:1 (print.datasetOut.Rd:12): Warning: missing </ul> before </div> print.modISDM.html:51:1 (print.modISDM.Rd:12): Warning: missing </ul> before </div> print.modMarks.html:51:1 (print.modMarks.Rd:12): Warning: missing </ul> before </div> print.modSpecies.html:51:1 (print.modSpecies.Rd:12): Warning: missing </ul> before </div> removeFormula.html:50:1 (removeFormula.Rd:12): Warning: missing </ul> before </div> specifyISDM.html:126:1 (specifyISDM.Rd:351): Warning: <h5> anchor "Usage" already defined specifyISDM.html:132:1 (specifyISDM.Rd:355): Warning: <h5> anchor "Arguments" already defined specifyISDM.html:155:1 (specifyISDM.Rd:368): Warning: <h5> anchor "Usage" already defined specifyISDM.html:161:1 (specifyISDM.Rd:372): Warning: <h5> anchor 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• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE