• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 12:29:28 UTC
• checking for file ‘PatientLevelPrediction/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PatientLevelPrediction’ version ‘6.6.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PatientLevelPrediction’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [30s/33s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [39s/55s] OK Examples with CPU (user + system) or elapsed time > 5s                        user system elapsed getCalibrationSummary 5.993 1.158 9.884 preprocessData 3.190 0.674 6.713 outcomeSurvivalPlot 3.548 0.192 5.056 splitData 2.655 0.773 5.200
• checking for unstated dependencies in ‘demo’ ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [184s/251s] OK   Running ‘testthat.R’ [184s/250s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [21s/26s] OK
• checking PDF version of manual ... [9s/13s] OK
• checking HTML version of manual ... [3s/3s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0BwGTH’ ‘~/tmp/scratch/Rtmp0cLs1y’   ‘~/tmp/scratch/Rtmp1BUqYS’ ‘~/tmp/scratch/Rtmp1LFz11’   ‘~/tmp/scratch/Rtmp1pgTi3’ ‘~/tmp/scratch/Rtmp2U1wWb’   ‘~/tmp/scratch/Rtmp2gdnWW’ ‘~/tmp/scratch/Rtmp2lbFrP’   ‘~/tmp/scratch/Rtmp2y2sbt’ ‘~/tmp/scratch/Rtmp2yvA0Q’   ‘~/tmp/scratch/Rtmp2zleBY’ ‘~/tmp/scratch/Rtmp4BVxJo’   ‘~/tmp/scratch/Rtmp5WAKB5’ ‘~/tmp/scratch/Rtmp62Dagp’   ‘~/tmp/scratch/Rtmp693r12’ ‘~/tmp/scratch/Rtmp6KGzGn’   ‘~/tmp/scratch/Rtmp6UuuV6’ ‘~/tmp/scratch/Rtmp6j6NkI’   ‘~/tmp/scratch/Rtmp7ZXeOv’ ‘~/tmp/scratch/Rtmp7hZdLf’   ‘~/tmp/scratch/Rtmp7klUnh’ ‘~/tmp/scratch/Rtmp87xKoA’   ‘~/tmp/scratch/Rtmp96tM3v’ ‘~/tmp/scratch/Rtmp9KJhnr’   ‘~/tmp/scratch/Rtmp9d7PcH’ ‘~/tmp/scratch/Rtmp9eglBe’   ‘~/tmp/scratch/RtmpAMecV6’ ‘~/tmp/scratch/RtmpAzDGVP’   ‘~/tmp/scratch/RtmpB9eg4Y’ ‘~/tmp/scratch/RtmpBsbvFN’   ‘~/tmp/scratch/RtmpBuRxXp’ ‘~/tmp/scratch/RtmpCOR2xy’   ‘~/tmp/scratch/RtmpCZBsEh’ ‘~/tmp/scratch/RtmpCdZzvW’   ‘~/tmp/scratch/RtmpD5ofCB’ ‘~/tmp/scratch/RtmpDf8pqx’   ‘~/tmp/scratch/RtmpDm3aOc’ ‘~/tmp/scratch/RtmpDrjNXR’   ‘~/tmp/scratch/RtmpDze4U3’ ‘~/tmp/scratch/RtmpEZbmmX’   ‘~/tmp/scratch/RtmpEjSmh2’ ‘~/tmp/scratch/RtmpFBctwd’   ‘~/tmp/scratch/RtmpFEpVUN’ ‘~/tmp/scratch/RtmpFImQT9’   ‘~/tmp/scratch/RtmpFR1bxy’ ‘~/tmp/scratch/RtmpFtdCXT’   ‘~/tmp/scratch/RtmpG6UhdZ’ ‘~/tmp/scratch/RtmpGjRdYo’   ‘~/tmp/scratch/RtmpGld3Ve’ ‘~/tmp/scratch/RtmpIWtHOj’   ‘~/tmp/scratch/RtmpIbSl8n’ ‘~/tmp/scratch/RtmpIuJEKN’   ‘~/tmp/scratch/RtmpJ1R130’ ‘~/tmp/scratch/RtmpJaGIxn’   ‘~/tmp/scratch/RtmpJhjQAm’ ‘~/tmp/scratch/RtmpJj8puv’   ‘~/tmp/scratch/RtmpJmMHMA’ ‘~/tmp/scratch/RtmpJr3GoH’   ‘~/tmp/scratch/RtmpKoe2hu’ ‘~/tmp/scratch/RtmpLupawM’   ‘~/tmp/scratch/RtmpMIMlxP’ ‘~/tmp/scratch/RtmpMPKRl1’   ‘~/tmp/scratch/RtmpNDi42Y’ ‘~/tmp/scratch/RtmpNxvymt’   ‘~/tmp/scratch/RtmpO0SzJ1’ ‘~/tmp/scratch/RtmpOZJjgl’   ‘~/tmp/scratch/RtmpOty3OD’ ‘~/tmp/scratch/RtmpOuUmQy’   ‘~/tmp/scratch/RtmpPWRSz8’ ‘~/tmp/scratch/RtmpPdSudQ’   ‘~/tmp/scratch/RtmpPn7w7d’ ‘~/tmp/scratch/RtmpQT8Aoi’   ‘~/tmp/scratch/RtmpQdAH60’ ‘~/tmp/scratch/RtmpQijZTx’   ‘~/tmp/scratch/RtmpRfuQi5’ ‘~/tmp/scratch/RtmpRqTv1U’   ‘~/tmp/scratch/RtmpRzyAGD’ ‘~/tmp/scratch/RtmpS15hUb’   ‘~/tmp/scratch/RtmpS4ZtBU’ ‘~/tmp/scratch/RtmpSSjIrx’   ‘~/tmp/scratch/RtmpSbOdGR’ ‘~/tmp/scratch/RtmpSm1QFF’   ‘~/tmp/scratch/RtmpT9BtxL’ ‘~/tmp/scratch/RtmpTWdrhg’   ‘~/tmp/scratch/RtmpUsbpCE’ ‘~/tmp/scratch/RtmpUtlPsX’   ‘~/tmp/scratch/RtmpV6tct0’ ‘~/tmp/scratch/RtmpVCjaeo’   ‘~/tmp/scratch/RtmpVEQSEt’ ‘~/tmp/scratch/RtmpVrfHHZ’   ‘~/tmp/scratch/RtmpXF0ler’ ‘~/tmp/scratch/RtmpXFa9mC’   ‘~/tmp/scratch/RtmpXQ7raV’ ‘~/tmp/scratch/RtmpXcWyrZ’   ‘~/tmp/scratch/RtmpXe9rUu’ ‘~/tmp/scratch/RtmpXegmgL’   ‘~/tmp/scratch/RtmpXgW0vi’ ‘~/tmp/scratch/RtmpXvXxh4’   ‘~/tmp/scratch/RtmpYQnPRW’ ‘~/tmp/scratch/RtmpZ3jyXF’   ‘~/tmp/scratch/RtmpZIG3EE’ ‘~/tmp/scratch/RtmpZegDKo’   ‘~/tmp/scratch/RtmpZubIVM’ ‘~/tmp/scratch/Rtmpa0lUr2’   ‘~/tmp/scratch/RtmpaHYxTU’ ‘~/tmp/scratch/Rtmpaa1a7H’   ‘~/tmp/scratch/RtmpazSyJx’ ‘~/tmp/scratch/RtmpbUAdcb’   ‘~/tmp/scratch/Rtmpc65w8J’ ‘~/tmp/scratch/RtmpcAbdV9’   ‘~/tmp/scratch/RtmpcGqFWr’ ‘~/tmp/scratch/Rtmpcdl2B9’   ‘~/tmp/scratch/Rtmpcp8xAj’ ‘~/tmp/scratch/Rtmpcqwq9C’   ‘~/tmp/scratch/RtmpdWpK7u’ ‘~/tmp/scratch/RtmpdjyJ9s’   ‘~/tmp/scratch/RtmpeIhoGO’ ‘~/tmp/scratch/RtmpeSXkdU’   ‘~/tmp/scratch/Rtmpf5B0Wu’ ‘~/tmp/scratch/RtmpfA3K5M’   ‘~/tmp/scratch/RtmpfhyhMq’ ‘~/tmp/scratch/RtmpgY2mKr’   ‘~/tmp/scratch/RtmpiZu7BT’ ‘~/tmp/scratch/RtmpiseZdl’   ‘~/tmp/scratch/RtmpivGHVg’ ‘~/tmp/scratch/RtmpivsS9B’   ‘~/tmp/scratch/RtmpjZRiZx’ ‘~/tmp/scratch/RtmpjuJcPu’   ‘~/tmp/scratch/Rtmpk5aAhj’ ‘~/tmp/scratch/RtmpkDfdKn’   ‘~/tmp/scratch/RtmpkIYADX’ ‘~/tmp/scratch/RtmpkLEzHm’   ‘~/tmp/scratch/RtmplUTAlu’ ‘~/tmp/scratch/RtmpleKF6z’   ‘~/tmp/scratch/RtmpltNDCV’ ‘~/tmp/scratch/RtmpmbqPcY’   ‘~/tmp/scratch/RtmpmjNEBw’ ‘~/tmp/scratch/RtmpmwLDSV’   ‘~/tmp/scratch/Rtmpn44DxW’ ‘~/tmp/scratch/RtmpnHCDjK’   ‘~/tmp/scratch/RtmpnPGhUV’ ‘~/tmp/scratch/Rtmpnnh20l’   ‘~/tmp/scratch/RtmpoAMAeE’ ‘~/tmp/scratch/RtmpoOEyUr’   ‘~/tmp/scratch/RtmpoeI7rL’ ‘~/tmp/scratch/RtmpohY5AO’   ‘~/tmp/scratch/RtmpoxmzFY’ ‘~/tmp/scratch/Rtmpp3jSH3’   ‘~/tmp/scratch/Rtmpq8Z6q3’ ‘~/tmp/scratch/RtmpqKX1VS’   ‘~/tmp/scratch/RtmpqevDPE’ ‘~/tmp/scratch/RtmprJDY8Q’   ‘~/tmp/scratch/RtmprZV964’ ‘~/tmp/scratch/RtmprvCS5E’   ‘~/tmp/scratch/Rtmps0nlxx’ ‘~/tmp/scratch/Rtmps2oSb3’   ‘~/tmp/scratch/RtmpsnUpW1’ ‘~/tmp/scratch/Rtmpt4bHSy’   ‘~/tmp/scratch/RtmptFOYGM’ ‘~/tmp/scratch/Rtmptnyopg’   ‘~/tmp/scratch/Rtmpu4G0Ac’ ‘~/tmp/scratch/RtmpuLM0Je’   ‘~/tmp/scratch/RtmpuuLJz3’ ‘~/tmp/scratch/RtmpvCHFF0’   ‘~/tmp/scratch/RtmpvmYaPQ’ ‘~/tmp/scratch/RtmpvvFqBl’   ‘~/tmp/scratch/RtmpwDePiM’ ‘~/tmp/scratch/RtmpwPKQWR’   ‘~/tmp/scratch/RtmpwTExcC’ ‘~/tmp/scratch/Rtmpx57uJv’   ‘~/tmp/scratch/RtmpyCAmVE’ ‘~/tmp/scratch/RtmpyPDMpa’   ‘~/tmp/scratch/RtmpzupwAP’ ‘~/tmp/scratch/xvfb-run.00pNFa’   ‘~/tmp/scratch/xvfb-run.2Oymn4’ ‘~/tmp/scratch/xvfb-run.3jfRTB’   ‘~/tmp/scratch/xvfb-run.4B8d67’ ‘~/tmp/scratch/xvfb-run.5y6gt6’   ‘~/tmp/scratch/xvfb-run.63akeH’ ‘~/tmp/scratch/xvfb-run.6HhuPZ’   ‘~/tmp/scratch/xvfb-run.6Og1yy’ ‘~/tmp/scratch/xvfb-run.6bli8g’   ‘~/tmp/scratch/xvfb-run.7fT6Ml’ ‘~/tmp/scratch/xvfb-run.8wCclG’   ‘~/tmp/scratch/xvfb-run.9TxuG2’ ‘~/tmp/scratch/xvfb-run.AEH14s’   ‘~/tmp/scratch/xvfb-run.CSXWYN’ ‘~/tmp/scratch/xvfb-run.Dg7ucX’   ‘~/tmp/scratch/xvfb-run.EvHKjB’ ‘~/tmp/scratch/xvfb-run.FMtiCO’   ‘~/tmp/scratch/xvfb-run.FSUcqI’ ‘~/tmp/scratch/xvfb-run.HDEFlc’   ‘~/tmp/scratch/xvfb-run.HGOA8q’ ‘~/tmp/scratch/xvfb-run.HY5FdV’   ‘~/tmp/scratch/xvfb-run.IY4YZb’ ‘~/tmp/scratch/xvfb-run.JjM9i5’   ‘~/tmp/scratch/xvfb-run.K4ESr3’ ‘~/tmp/scratch/xvfb-run.LumVb2’   ‘~/tmp/scratch/xvfb-run.MCENhT’ ‘~/tmp/scratch/xvfb-run.NBF6RE’   ‘~/tmp/scratch/xvfb-run.NBOsJk’ ‘~/tmp/scratch/xvfb-run.O57C4q’   ‘~/tmp/scratch/xvfb-run.O6NtEk’ ‘~/tmp/scratch/xvfb-run.ODihMt’   ‘~/tmp/scratch/xvfb-run.PRhmuI’ ‘~/tmp/scratch/xvfb-run.Q1KZTg’   ‘~/tmp/scratch/xvfb-run.Q34FZE’ ‘~/tmp/scratch/xvfb-run.Q8dFNU’   ‘~/tmp/scratch/xvfb-run.QQz32T’ ‘~/tmp/scratch/xvfb-run.RVsoSH’   ‘~/tmp/scratch/xvfb-run.SGZZca’ ‘~/tmp/scratch/xvfb-run.SKqlTU’   ‘~/tmp/scratch/xvfb-run.TkQxG2’ ‘~/tmp/scratch/xvfb-run.TsajEK’   ‘~/tmp/scratch/xvfb-run.U6UmGM’ ‘~/tmp/scratch/xvfb-run.UDUudv’   ‘~/tmp/scratch/xvfb-run.UONkNg’ ‘~/tmp/scratch/xvfb-run.VaprJf’   ‘~/tmp/scratch/xvfb-run.Vl8vaq’ ‘~/tmp/scratch/xvfb-run.WRwVi5’   ‘~/tmp/scratch/xvfb-run.WiPXw5’ ‘~/tmp/scratch/xvfb-run.X2p4PU’   ‘~/tmp/scratch/xvfb-run.XhUBbo’ ‘~/tmp/scratch/xvfb-run.Yz36gl’   ‘~/tmp/scratch/xvfb-run.Z8tVgd’ ‘~/tmp/scratch/xvfb-run.ZMvRyO’   ‘~/tmp/scratch/xvfb-run.ar413L’ ‘~/tmp/scratch/xvfb-run.bmAhsO’   ‘~/tmp/scratch/xvfb-run.cZDdef’ ‘~/tmp/scratch/xvfb-run.dqe3Gu’   ‘~/tmp/scratch/xvfb-run.geqKj0’ ‘~/tmp/scratch/xvfb-run.h83lHX’   ‘~/tmp/scratch/xvfb-run.hpoQf0’ ‘~/tmp/scratch/xvfb-run.idPpIK’   ‘~/tmp/scratch/xvfb-run.k1DWFR’ ‘~/tmp/scratch/xvfb-run.kLnbtm’   ‘~/tmp/scratch/xvfb-run.ltMEbF’ ‘~/tmp/scratch/xvfb-run.mVHs3D’   ‘~/tmp/scratch/xvfb-run.mgj9hf’ ‘~/tmp/scratch/xvfb-run.n1arUh’   ‘~/tmp/scratch/xvfb-run.nWNiup’ ‘~/tmp/scratch/xvfb-run.ntfT7X’   ‘~/tmp/scratch/xvfb-run.pkAAFC’ ‘~/tmp/scratch/xvfb-run.q673UW’   ‘~/tmp/scratch/xvfb-run.rMaoez’ ‘~/tmp/scratch/xvfb-run.s2aQ9l’   ‘~/tmp/scratch/xvfb-run.sy8nbX’ ‘~/tmp/scratch/xvfb-run.tWjASB’   ‘~/tmp/scratch/xvfb-run.uHBrh5’ ‘~/tmp/scratch/xvfb-run.uqWptB’   ‘~/tmp/scratch/xvfb-run.vKBo33’ ‘~/tmp/scratch/xvfb-run.vVoogd’   ‘~/tmp/scratch/xvfb-run.vrGjUw’ ‘~/tmp/scratch/xvfb-run.xQLv6w’
• DONE

Status: 1 NOTE