• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 12:28:01 UTC
• checking for file ‘PSCBS/DESCRIPTION’ ... OK
• this is package ‘PSCBS’ version ‘0.68.0’
• checking CRAN incoming feasibility ... [3s/5s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘PSCBS’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking whether startup messages can be suppressed ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [26s/33s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [100s/133s] OK   Running ‘PairedPSCBS,boot.R’ [3s/4s]   Running ‘findLargeGaps.R’ [1s/1s]   Running ‘randomSeed.R’ [1s/1s]   Running ‘segmentByCBS,bug67.R’ [1s/2s]   Running ‘segmentByCBS,calls.R’ [0s/0s]   Running ‘segmentByCBS,futures.R’ [6s/12s]   Running ‘segmentByCBS,median.R’ [3s/4s]   Running ‘segmentByCBS,prune.R’ [2s/2s]   Running ‘segmentByCBS,report.R’ [0s/0s]   Running ‘segmentByCBS,shiftTCN.R’ [27s/29s]   Running ‘segmentByCBS,weights.R’ [7s/9s]   Running ‘segmentByCBS.R’ [6s/9s]   Running ‘segmentByNonPairedPSCBS,medianDH.R’ [3s/3s]   Running ‘segmentByPairedPSCBS,DH.R’ [3s/3s]   Running ‘segmentByPairedPSCBS,calls.R’ [5s/5s]   Running ‘segmentByPairedPSCBS,futures.R’ [9s/18s]   Running ‘segmentByPairedPSCBS,noNormalBAFs.R’ [3s/5s]   Running ‘segmentByPairedPSCBS,report.R’ [0s/1s]   Running ‘segmentByPairedPSCBS,seqOfSegmentsByDP.R’ [12s/15s]   Running ‘segmentByPairedPSCBS.R’ [9s/11s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [43s/62s] OK
• checking PDF version of manual ... [7s/11s] OK
• checking HTML version of manual ... [3s/4s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0FDgYj’ ‘~/tmp/scratch/Rtmp0Y8UXF’   ‘~/tmp/scratch/Rtmp0zHufx’ ‘~/tmp/scratch/Rtmp1Wlwbl’   ‘~/tmp/scratch/Rtmp1ZoEGf’ ‘~/tmp/scratch/Rtmp1cH0Uj’   ‘~/tmp/scratch/Rtmp1hCMdE’ ‘~/tmp/scratch/Rtmp1pCXAE’   ‘~/tmp/scratch/Rtmp1rB1A2’ ‘~/tmp/scratch/Rtmp2ALTV3’   ‘~/tmp/scratch/Rtmp2ZnbpP’ ‘~/tmp/scratch/Rtmp2e1VEx’   ‘~/tmp/scratch/Rtmp3YarbZ’ ‘~/tmp/scratch/Rtmp4Neibr’   ‘~/tmp/scratch/Rtmp4Uh6B5’ ‘~/tmp/scratch/Rtmp4r9cuq’   ‘~/tmp/scratch/Rtmp5WP0oG’ ‘~/tmp/scratch/Rtmp5kuGJr’   ‘~/tmp/scratch/Rtmp5pgR3x’ ‘~/tmp/scratch/Rtmp6Cgvi5’   ‘~/tmp/scratch/Rtmp6uDtTF’ ‘~/tmp/scratch/Rtmp8VltQ9’   ‘~/tmp/scratch/Rtmp9M3baP’ ‘~/tmp/scratch/Rtmp9eglBe’   ‘~/tmp/scratch/Rtmp9m9cOA’ ‘~/tmp/scratch/RtmpALJaeP’   ‘~/tmp/scratch/RtmpASSl3c’ ‘~/tmp/scratch/RtmpATMblh’   ‘~/tmp/scratch/RtmpBv104a’ ‘~/tmp/scratch/RtmpC6w86h’   ‘~/tmp/scratch/RtmpCPX9Ui’ ‘~/tmp/scratch/RtmpD741bJ’   ‘~/tmp/scratch/RtmpDEu6bk’ ‘~/tmp/scratch/RtmpDKx7Ne’   ‘~/tmp/scratch/RtmpDRSWrJ’ ‘~/tmp/scratch/RtmpDcNXKg’   ‘~/tmp/scratch/RtmpEIvPuB’ ‘~/tmp/scratch/RtmpEJLm4N’   ‘~/tmp/scratch/RtmpEK3ows’ ‘~/tmp/scratch/RtmpESBBq6’   ‘~/tmp/scratch/RtmpEcfBZt’ ‘~/tmp/scratch/RtmpEvVF3f’   ‘~/tmp/scratch/RtmpFImQT9’ ‘~/tmp/scratch/RtmpFOIdKN’   ‘~/tmp/scratch/RtmpFpqdN5’ ‘~/tmp/scratch/RtmpGC7ueH’   ‘~/tmp/scratch/RtmpHB2gOF’ ‘~/tmp/scratch/RtmpHTgaa7’   ‘~/tmp/scratch/RtmpI9WlOk’ ‘~/tmp/scratch/RtmpIK2u5Z’   ‘~/tmp/scratch/RtmpJ43QLm’ ‘~/tmp/scratch/RtmpJNIRpy’   ‘~/tmp/scratch/RtmpKQHeEH’ ‘~/tmp/scratch/RtmpKbLMwb’   ‘~/tmp/scratch/RtmpLsFSwv’ ‘~/tmp/scratch/RtmpLtr2wB’   ‘~/tmp/scratch/RtmpMMqv6P’ ‘~/tmp/scratch/RtmpMmgOCF’   ‘~/tmp/scratch/RtmpNHP52M’ ‘~/tmp/scratch/RtmpNfWGsL’   ‘~/tmp/scratch/RtmpNgkmjn’ ‘~/tmp/scratch/RtmpOBnzIX’   ‘~/tmp/scratch/RtmpOQNchG’ ‘~/tmp/scratch/RtmpOuTodc’   ‘~/tmp/scratch/RtmpOuUmQy’ ‘~/tmp/scratch/RtmpOvqqnZ’   ‘~/tmp/scratch/RtmpP4SaHX’ ‘~/tmp/scratch/RtmpPQmx9z’   ‘~/tmp/scratch/RtmpQPRXXL’ ‘~/tmp/scratch/RtmpQQaot1’   ‘~/tmp/scratch/RtmpQYfD5Q’ ‘~/tmp/scratch/RtmpQerxa3’   ‘~/tmp/scratch/RtmpR9mkIM’ ‘~/tmp/scratch/RtmpRGMTKh’   ‘~/tmp/scratch/RtmpRjDaJg’ ‘~/tmp/scratch/RtmpRz4iY4’   ‘~/tmp/scratch/RtmpSUoPKG’ ‘~/tmp/scratch/RtmpTWdrhg’   ‘~/tmp/scratch/RtmpTbhvou’ ‘~/tmp/scratch/RtmpTwRjAK’   ‘~/tmp/scratch/RtmpU4dYr0’ ‘~/tmp/scratch/RtmpU8UnKp’   ‘~/tmp/scratch/RtmpUFBauu’ ‘~/tmp/scratch/RtmpUIOUFD’   ‘~/tmp/scratch/RtmpV64KJo’ ‘~/tmp/scratch/RtmpVxhpSF’   ‘~/tmp/scratch/RtmpW617pC’ ‘~/tmp/scratch/RtmpWsOM29’   ‘~/tmp/scratch/RtmpX1WjOQ’ ‘~/tmp/scratch/RtmpXk48rD’   ‘~/tmp/scratch/RtmpXqSmkC’ ‘~/tmp/scratch/RtmpY2wNkq’   ‘~/tmp/scratch/RtmpY4Uh1C’ ‘~/tmp/scratch/RtmpYJUxgM’   ‘~/tmp/scratch/RtmpYi6MXW’ ‘~/tmp/scratch/RtmpYlbim7’   ‘~/tmp/scratch/RtmpYzdisb’ ‘~/tmp/scratch/RtmpYzzce4’   ‘~/tmp/scratch/RtmpZ3jyXF’ ‘~/tmp/scratch/RtmpZByN5e’   ‘~/tmp/scratch/RtmpZE3krl’ ‘~/tmp/scratch/RtmpaGAN29’   ‘~/tmp/scratch/RtmpaWBAiu’ ‘~/tmp/scratch/RtmpbY9pne’   ‘~/tmp/scratch/RtmpboTPhX’ ‘~/tmp/scratch/Rtmpc65w8J’   ‘~/tmp/scratch/RtmpctWF72’ ‘~/tmp/scratch/RtmpctqeXM’   ‘~/tmp/scratch/Rtmpd1SNgw’ ‘~/tmp/scratch/RtmpdLwhQj’   ‘~/tmp/scratch/RtmpduXwRt’ ‘~/tmp/scratch/Rtmpe0igNF’   ‘~/tmp/scratch/Rtmpe3sXQa’ ‘~/tmp/scratch/RtmpebR94I’   ‘~/tmp/scratch/RtmpfcjXoQ’ ‘~/tmp/scratch/RtmpgOkzR6’   ‘~/tmp/scratch/RtmpgXmm9H’ ‘~/tmp/scratch/RtmpgstFQp’   ‘~/tmp/scratch/RtmpgtKwNc’ ‘~/tmp/scratch/RtmphOeD7o’   ‘~/tmp/scratch/RtmphtaBB6’ ‘~/tmp/scratch/RtmpiZu7BT’   ‘~/tmp/scratch/Rtmpj4JfId’ ‘~/tmp/scratch/RtmpkIYADX’   ‘~/tmp/scratch/RtmpkWZxY5’ ‘~/tmp/scratch/RtmpkaxSpq’   ‘~/tmp/scratch/Rtmpkmk08F’ ‘~/tmp/scratch/RtmpknT3R5’   ‘~/tmp/scratch/Rtmpl1fuSK’ ‘~/tmp/scratch/RtmplQZFjN’   ‘~/tmp/scratch/RtmpleNDfs’ ‘~/tmp/scratch/RtmplkhJyg’   ‘~/tmp/scratch/RtmplnZGTx’ ‘~/tmp/scratch/RtmplpvGmv’   ‘~/tmp/scratch/RtmplyFpKl’ ‘~/tmp/scratch/RtmpmYOtE4’   ‘~/tmp/scratch/RtmpmYx486’ ‘~/tmp/scratch/RtmpmZPE0D’   ‘~/tmp/scratch/RtmpnIjnYK’ ‘~/tmp/scratch/Rtmpng9qUz’   ‘~/tmp/scratch/Rtmpo7I7lr’ ‘~/tmp/scratch/RtmpoCn17G’   ‘~/tmp/scratch/RtmpolrC7x’ ‘~/tmp/scratch/RtmppM3vi8’   ‘~/tmp/scratch/RtmpptQeep’ ‘~/tmp/scratch/RtmppxeYzf’   ‘~/tmp/scratch/RtmpqPmVEp’ ‘~/tmp/scratch/Rtmpr5QAnL’   ‘~/tmp/scratch/RtmprGMWyT’ ‘~/tmp/scratch/Rtmps0809l’   ‘~/tmp/scratch/Rtmps0nlxx’ ‘~/tmp/scratch/Rtmps9t5JE’   ‘~/tmp/scratch/RtmpsK4dIz’ ‘~/tmp/scratch/Rtmpsa5i7t’   ‘~/tmp/scratch/Rtmpsh5y2b’ ‘~/tmp/scratch/RtmpslAm3W’   ‘~/tmp/scratch/Rtmpswcb5a’ ‘~/tmp/scratch/RtmptFOYGM’   ‘~/tmp/scratch/RtmptkUIbs’ ‘~/tmp/scratch/RtmptoJc1S’   ‘~/tmp/scratch/Rtmpu9sAUF’ ‘~/tmp/scratch/RtmpulsjCF’   ‘~/tmp/scratch/RtmpvHdQ2J’ ‘~/tmp/scratch/RtmpvOwCh2’   ‘~/tmp/scratch/RtmpvafsMo’ ‘~/tmp/scratch/RtmpvwKwQZ’   ‘~/tmp/scratch/RtmpwIA3wy’ ‘~/tmp/scratch/RtmpwIkXmm’   ‘~/tmp/scratch/RtmpwvtrIm’ ‘~/tmp/scratch/RtmpxCXB5h’   ‘~/tmp/scratch/RtmpyEPf1Z’ ‘~/tmp/scratch/RtmpzAHpKt’   ‘~/tmp/scratch/cc1AG0JI.s’ ‘~/tmp/scratch/ccTh6by5.s’   ‘~/tmp/scratch/xvfb-run.0qfQWX’ ‘~/tmp/scratch/xvfb-run.19duWg’   ‘~/tmp/scratch/xvfb-run.1bc2H7’ ‘~/tmp/scratch/xvfb-run.4B8d67’   ‘~/tmp/scratch/xvfb-run.4d3Q7K’ ‘~/tmp/scratch/xvfb-run.6Og1yy’   ‘~/tmp/scratch/xvfb-run.7fT6Ml’ ‘~/tmp/scratch/xvfb-run.8KRenm’   ‘~/tmp/scratch/xvfb-run.9ehB2w’ ‘~/tmp/scratch/xvfb-run.CCdiz9’   ‘~/tmp/scratch/xvfb-run.CDdmZC’ ‘~/tmp/scratch/xvfb-run.ChiDUF’   ‘~/tmp/scratch/xvfb-run.CrBTOQ’ ‘~/tmp/scratch/xvfb-run.DOKYxY’   ‘~/tmp/scratch/xvfb-run.EQwnq9’ ‘~/tmp/scratch/xvfb-run.F9jTSs’   ‘~/tmp/scratch/xvfb-run.FHmSXy’ ‘~/tmp/scratch/xvfb-run.FN7HFc’   ‘~/tmp/scratch/xvfb-run.IiroPR’ ‘~/tmp/scratch/xvfb-run.MJJD0Z’   ‘~/tmp/scratch/xvfb-run.Mkde5n’ ‘~/tmp/scratch/xvfb-run.NYaLTH’   ‘~/tmp/scratch/xvfb-run.Nssp8O’ ‘~/tmp/scratch/xvfb-run.Q8dFNU’   ‘~/tmp/scratch/xvfb-run.QQz32T’ ‘~/tmp/scratch/xvfb-run.R2zsvx’   ‘~/tmp/scratch/xvfb-run.SNZI2a’ ‘~/tmp/scratch/xvfb-run.SuqBBs’   ‘~/tmp/scratch/xvfb-run.Ti7sMu’ ‘~/tmp/scratch/xvfb-run.UDUudv’   ‘~/tmp/scratch/xvfb-run.UGd16X’ ‘~/tmp/scratch/xvfb-run.Uk0CNJ’   ‘~/tmp/scratch/xvfb-run.WJQZFg’ ‘~/tmp/scratch/xvfb-run.WtuPAE’   ‘~/tmp/scratch/xvfb-run.Y1xD2G’ ‘~/tmp/scratch/xvfb-run.YBSZRz’   ‘~/tmp/scratch/xvfb-run.Z0j4ZN’ ‘~/tmp/scratch/xvfb-run.ZxCNLZ’   ‘~/tmp/scratch/xvfb-run.ZzRbM1’ ‘~/tmp/scratch/xvfb-run.bXZoRN’   ‘~/tmp/scratch/xvfb-run.cLLBN0’ ‘~/tmp/scratch/xvfb-run.dM19F4’   ‘~/tmp/scratch/xvfb-run.dNXOT0’ ‘~/tmp/scratch/xvfb-run.fDdJXR’   ‘~/tmp/scratch/xvfb-run.gIhTSM’ ‘~/tmp/scratch/xvfb-run.gRFqd2’   ‘~/tmp/scratch/xvfb-run.gwXOHZ’ ‘~/tmp/scratch/xvfb-run.iao2DD’   ‘~/tmp/scratch/xvfb-run.icTlcP’ ‘~/tmp/scratch/xvfb-run.id2VHl’   ‘~/tmp/scratch/xvfb-run.idPpIK’ ‘~/tmp/scratch/xvfb-run.k1Yhzp’   ‘~/tmp/scratch/xvfb-run.kU2f9Q’ ‘~/tmp/scratch/xvfb-run.lAArV3’   ‘~/tmp/scratch/xvfb-run.lD1mhj’ ‘~/tmp/scratch/xvfb-run.lwW2AN’   ‘~/tmp/scratch/xvfb-run.mVHs3D’ ‘~/tmp/scratch/xvfb-run.nA30fr’   ‘~/tmp/scratch/xvfb-run.nNYB93’ ‘~/tmp/scratch/xvfb-run.ntfT7X’   ‘~/tmp/scratch/xvfb-run.oO6RQt’ ‘~/tmp/scratch/xvfb-run.oaQtbB’   ‘~/tmp/scratch/xvfb-run.ojXiNj’ ‘~/tmp/scratch/xvfb-run.ot0wUk’   ‘~/tmp/scratch/xvfb-run.pn1sSF’ ‘~/tmp/scratch/xvfb-run.qTgaTh’   ‘~/tmp/scratch/xvfb-run.sBxDPN’ ‘~/tmp/scratch/xvfb-run.sOTeKp’   ‘~/tmp/scratch/xvfb-run.spIhnD’ ‘~/tmp/scratch/xvfb-run.tESfrT’   ‘~/tmp/scratch/xvfb-run.uqWptB’ ‘~/tmp/scratch/xvfb-run.vixKzm’   ‘~/tmp/scratch/xvfb-run.wcywf3’ ‘~/tmp/scratch/xvfb-run.yG7lKC’   ‘~/tmp/scratch/xvfb-run.yXtOkN’ ‘~/tmp/scratch/xvfb-run.ztAPkY’   ‘~/tmp/scratch/xvfb-run.ztsAdI’
• DONE

Status: 1 NOTE