• using R Under development (unstable) (2025-12-19 r89206)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘POUMM/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘POUMM’ version ‘2.1.8’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘POUMM’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-15 (Debian 15.2.0-11) 15.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/5s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/24s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [3s/3s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [13s/14s] ERROR   Running ‘test-all.R’ [13s/14s] Running the tests in ‘tests/test-all.R’ failed. Complete output:   > # Copyright 2015-2019 Venelin Mitov   > #   > # This file is part of POUMM.   > #   > # POUMM is free software: you can redistribute it and/or modify   > # it under the terms of the GNU General Public License as published by   > # the Free Software Foundation, either version 3 of the License, or   > # (at your option) any later version.   > #   > # POUMM is distributed in the hope that it will be useful,   > # but WITHOUT ANY WARRANTY; without even the implied warranty of   > # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the   > # GNU General Public License for more details.   > #   > # You should have received a copy of the GNU General Public License   > # along with POUMM If not, see <http://www.gnu.org/licenses/>.   >   > library(testthat)   >   > test_check("POUMM")   Loading required package: POUMM   Loading required package: Rcpp     generate 10000 samples     generate 10000 samples     generate 10000 samples   Saving _problems/test-fit-53.R   [ FAIL 1 | WARN 0 | SKIP 0 | PASS 29 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-fit.R:53:5'): fit passes without errors ────────────────────────   Error in ``[.data.table`(data, , `:=`(HPDUpperFiltered, min(max(value), unique(HPDUpper))), list(stat = factor(stat), chain = factor(chain)))`: attempt access index 12/12 in VECTOR_ELT   Backtrace:        ▆     1. ├─testthat::expect_warning(...) at test-fit.R:53:5     2. │ └─testthat:::quasi_capture(...)     3. │ ├─testthat (local) .capture(...)     4. │ │ └─base::withCallingHandlers(...)     5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))     6. ├─base::plot(fit1, interactive = FALSE, doPlot = FALSE)     7. └─POUMM:::plot.POUMM(fit1, interactive = FALSE, doPlot = FALSE)     8. ├─base::plot(...)     9. └─POUMM:::plot.summary.POUMM(...)    10. ├─...[]    11. └─data.table:::`[.data.table`(...)      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 29 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [18s/21s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘InterpretingPOUMM.Rmd’ using rmarkdown Quitting from InterpretingPOUMM.Rmd:218-221 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 12/12 in VECTOR_ELT --- Backtrace:     ▆  1. ├─base::plot(...)  2. └─POUMM:::plot.POUMM(...)  3. ├─base::plot(...)  4. └─POUMM:::plot.summary.POUMM(...)  5. ├─...[]  6. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'InterpretingPOUMM.Rmd' failed with diagnostics: attempt access index 12/12 in VECTOR_ELT --- failed re-building ‘InterpretingPOUMM.Rmd’ --- re-building ‘UserGuide.Rmd’ using rmarkdown Quitting from UserGuide.Rmd:242-247 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 12/12 in VECTOR_ELT --- Backtrace:     ▆  1. ├─base::plot(fitPOUMM, showUnivarDensityOnDiag = TRUE, doPlot = FALSE)  2. └─POUMM:::plot.POUMM(...)  3. ├─base::plot(...)  4. └─POUMM:::plot.summary.POUMM(...)  5. ├─...[]  6. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'UserGuide.Rmd' failed with diagnostics: attempt access index 12/12 in VECTOR_ELT --- failed re-building ‘UserGuide.Rmd’ SUMMARY: processing the following files failed:   ‘InterpretingPOUMM.Rmd’ ‘UserGuide.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs