• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 12:37:12 UTC
• checking for file ‘PHSMM/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PHSMM’ version ‘1.0’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Jennifer Pohle <jennifer.pohle@uni-bielefeld.de>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: person(given = "Jennifer",                     family = "Pohle",                     role = c("aut", "cre"),                     email = "jennifer.pohle@uni-bielefeld.de") as necessary. The Description field contains   hidden semi-Markov models. <arXiv:2101.09197>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PHSMM’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [0s/1s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp03ntpD’ ‘~/tmp/scratch/Rtmp14nkft’   ‘~/tmp/scratch/Rtmp1Hcy4u’ ‘~/tmp/scratch/Rtmp26G4Rm’   ‘~/tmp/scratch/Rtmp3ngYsT’ ‘~/tmp/scratch/Rtmp46sd4I’   ‘~/tmp/scratch/Rtmp4hrMyD’ ‘~/tmp/scratch/Rtmp5F0d5g’   ‘~/tmp/scratch/Rtmp5jkQYy’ ‘~/tmp/scratch/Rtmp6K1LSN’   ‘~/tmp/scratch/Rtmp7WXJWK’ ‘~/tmp/scratch/Rtmp8PpuIk’   ‘~/tmp/scratch/Rtmp8bWKvM’ ‘~/tmp/scratch/RtmpA4jhKE’   ‘~/tmp/scratch/RtmpA7yiYQ’ ‘~/tmp/scratch/RtmpBbSMIJ’   ‘~/tmp/scratch/RtmpCKwPRc’ ‘~/tmp/scratch/RtmpDxPaES’   ‘~/tmp/scratch/RtmpEfPuZI’ ‘~/tmp/scratch/RtmpFRpKpg’   ‘~/tmp/scratch/RtmpFWyvik’ ‘~/tmp/scratch/RtmpHEdudl’   ‘~/tmp/scratch/RtmpHjFhll’ ‘~/tmp/scratch/RtmpHrK2yE’   ‘~/tmp/scratch/RtmpJCNBBj’ ‘~/tmp/scratch/RtmpJHgReZ’   ‘~/tmp/scratch/RtmpJhhSIn’ ‘~/tmp/scratch/RtmpKBjs9h’   ‘~/tmp/scratch/RtmpKy6bpy’ ‘~/tmp/scratch/RtmpLuTEKI’   ‘~/tmp/scratch/RtmpMC2cJr’ ‘~/tmp/scratch/RtmpMNmZ5e’   ‘~/tmp/scratch/RtmpNJkgw4’ ‘~/tmp/scratch/RtmpP5Op7p’   ‘~/tmp/scratch/RtmpPUw8Rf’ ‘~/tmp/scratch/RtmpPv790T’   ‘~/tmp/scratch/RtmpQ2u4MG’ ‘~/tmp/scratch/RtmpQwxyJS’   ‘~/tmp/scratch/RtmpROdjgi’ ‘~/tmp/scratch/RtmpRSWH00’   ‘~/tmp/scratch/RtmpRmpCaH’ ‘~/tmp/scratch/RtmpRr5MJ6’   ‘~/tmp/scratch/RtmpTu62Je’ ‘~/tmp/scratch/RtmpTyTsEn’   ‘~/tmp/scratch/RtmpW4kgO2’ ‘~/tmp/scratch/RtmpWolBrU’   ‘~/tmp/scratch/RtmpXCGj8H’ ‘~/tmp/scratch/RtmpXdanic’   ‘~/tmp/scratch/RtmpXt2eBY’ ‘~/tmp/scratch/RtmpXwxRfz’   ‘~/tmp/scratch/RtmpY787r4’ ‘~/tmp/scratch/RtmpY8PbVe’   ‘~/tmp/scratch/RtmpYc1AQo’ ‘~/tmp/scratch/RtmpZ678Xk’   ‘~/tmp/scratch/RtmpZsRpc9’ ‘~/tmp/scratch/RtmpabX0qn’   ‘~/tmp/scratch/RtmpabgegN’ ‘~/tmp/scratch/RtmpazyqLv’   ‘~/tmp/scratch/RtmpbX2wwW’ ‘~/tmp/scratch/Rtmpc9hR7J’   ‘~/tmp/scratch/RtmpcPIMdX’ ‘~/tmp/scratch/RtmpcZpuAu’   ‘~/tmp/scratch/RtmpdPI5UR’ ‘~/tmp/scratch/RtmpeYVe2g’   ‘~/tmp/scratch/RtmpfM3buU’ ‘~/tmp/scratch/RtmpfwFvE4’   ‘~/tmp/scratch/Rtmpg6xzLj’ ‘~/tmp/scratch/RtmpgzEjFT’   ‘~/tmp/scratch/Rtmphg7WSu’ ‘~/tmp/scratch/RtmpiKUdAG’   ‘~/tmp/scratch/RtmpiUo9Nu’ ‘~/tmp/scratch/Rtmpim7v1z’   ‘~/tmp/scratch/Rtmpjvx5St’ ‘~/tmp/scratch/RtmpkPZiBc’   ‘~/tmp/scratch/RtmpkeOJHv’ ‘~/tmp/scratch/Rtmpkk5qE2’   ‘~/tmp/scratch/RtmpkrDaZI’ ‘~/tmp/scratch/Rtmpp4dbVn’   ‘~/tmp/scratch/RtmppOMUDr’ ‘~/tmp/scratch/RtmppPhtNi’   ‘~/tmp/scratch/Rtmppc3YWQ’ ‘~/tmp/scratch/RtmpphQBz2’   ‘~/tmp/scratch/Rtmpq8fbjg’ ‘~/tmp/scratch/RtmpqoRN7v’   ‘~/tmp/scratch/Rtmpr5oZOC’ ‘~/tmp/scratch/RtmprLJ3LQ’   ‘~/tmp/scratch/RtmprfIGbS’ ‘~/tmp/scratch/RtmpsVrv9l’   ‘~/tmp/scratch/RtmpsreKzO’ ‘~/tmp/scratch/Rtmpt19NWn’   ‘~/tmp/scratch/Rtmpt2nwwL’ ‘~/tmp/scratch/RtmptK4O5Z’   ‘~/tmp/scratch/Rtmpu7SAqe’ ‘~/tmp/scratch/RtmpvlCdwx’   ‘~/tmp/scratch/Rtmpvq3uAT’ ‘~/tmp/scratch/RtmpvrikVE’   ‘~/tmp/scratch/Rtmpw8SDA4’ ‘~/tmp/scratch/RtmpwDYLtC’   ‘~/tmp/scratch/RtmpwgswX3’ ‘~/tmp/scratch/RtmpwhyR8S’   ‘~/tmp/scratch/RtmpxGUG5G’ ‘~/tmp/scratch/Rtmpz9vMm9’   ‘~/tmp/scratch/RtmpzeH4oU’ ‘~/tmp/scratch/ccRhB70I.s’   ‘~/tmp/scratch/ccUPI7j3.s’ ‘~/tmp/scratch/xvfb-run.0SZq24’   ‘~/tmp/scratch/xvfb-run.1rylQv’ ‘~/tmp/scratch/xvfb-run.3R9wR6’   ‘~/tmp/scratch/xvfb-run.3szaQJ’ ‘~/tmp/scratch/xvfb-run.5DTJzg’   ‘~/tmp/scratch/xvfb-run.Ar6KF6’ ‘~/tmp/scratch/xvfb-run.FPPMeY’   ‘~/tmp/scratch/xvfb-run.FdPGzk’ ‘~/tmp/scratch/xvfb-run.GQDJOU’   ‘~/tmp/scratch/xvfb-run.HWpOgr’ ‘~/tmp/scratch/xvfb-run.NX9rwO’   ‘~/tmp/scratch/xvfb-run.QTnnZs’ ‘~/tmp/scratch/xvfb-run.S2mRBV’   ‘~/tmp/scratch/xvfb-run.WB22xS’ ‘~/tmp/scratch/xvfb-run.WS7BRW’   ‘~/tmp/scratch/xvfb-run.YPuqBX’ ‘~/tmp/scratch/xvfb-run.YkrWZx’   ‘~/tmp/scratch/xvfb-run.adXV3S’ ‘~/tmp/scratch/xvfb-run.jDB1zC’   ‘~/tmp/scratch/xvfb-run.krKlc0’ ‘~/tmp/scratch/xvfb-run.nu4fCc’   ‘~/tmp/scratch/xvfb-run.pc6ClN’ ‘~/tmp/scratch/xvfb-run.qYCZ8Y’   ‘~/tmp/scratch/xvfb-run.rJVXGM’ ‘~/tmp/scratch/xvfb-run.sK7NOj’   ‘~/tmp/scratch/xvfb-run.uUvPuN’ ‘~/tmp/scratch/xvfb-run.zC56q1’
• DONE

Status: 2 NOTEs