• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 12:24:22 UTC
• checking for file ‘PHEindicatormethods/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PHEindicatormethods’ version ‘2.1.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PHEindicatormethods’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/14s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/10s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [40s/52s] OK   Running ‘testthat.R’ [40s/52s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [59s/76s] OK
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp095XGf’ ‘~/tmp/scratch/Rtmp0N5H4T’   ‘~/tmp/scratch/Rtmp0mFA7h’ ‘~/tmp/scratch/Rtmp0wZZeU’   ‘~/tmp/scratch/Rtmp1VZMWE’ ‘~/tmp/scratch/Rtmp1mECoV’   ‘~/tmp/scratch/Rtmp2FWYfl’ ‘~/tmp/scratch/Rtmp2IjtGQ’   ‘~/tmp/scratch/Rtmp2RwEvz’ ‘~/tmp/scratch/Rtmp43QJfW’   ‘~/tmp/scratch/Rtmp4unm9W’ ‘~/tmp/scratch/Rtmp50jLp4’   ‘~/tmp/scratch/Rtmp5KX7tY’ ‘~/tmp/scratch/Rtmp5QpxlW’   ‘~/tmp/scratch/Rtmp5qdjye’ ‘~/tmp/scratch/Rtmp5rabIR’   ‘~/tmp/scratch/Rtmp6bwacM’ ‘~/tmp/scratch/Rtmp6dLlhj’   ‘~/tmp/scratch/Rtmp7P6agp’ ‘~/tmp/scratch/Rtmp7QIuA3’   ‘~/tmp/scratch/Rtmp7oJbCd’ ‘~/tmp/scratch/Rtmp7qH9wO’   ‘~/tmp/scratch/Rtmp7xM9KY’ ‘~/tmp/scratch/Rtmp8DPLs4’   ‘~/tmp/scratch/Rtmp8G7n9o’ ‘~/tmp/scratch/Rtmp8JFLXh’   ‘~/tmp/scratch/Rtmp8M8Wey’ ‘~/tmp/scratch/Rtmp8Ntkkc’   ‘~/tmp/scratch/Rtmp9KNx7l’ ‘~/tmp/scratch/Rtmp9zmltl’   ‘~/tmp/scratch/RtmpA6tbEw’ ‘~/tmp/scratch/RtmpA9ZOa9’   ‘~/tmp/scratch/RtmpACe4Mp’ ‘~/tmp/scratch/RtmpBc9Yt8’   ‘~/tmp/scratch/RtmpCtWDZQ’ ‘~/tmp/scratch/RtmpDIwlui’   ‘~/tmp/scratch/RtmpDifrlx’ ‘~/tmp/scratch/RtmpEDlo0X’   ‘~/tmp/scratch/RtmpEHWzaC’ ‘~/tmp/scratch/RtmpF9DVjv’   ‘~/tmp/scratch/RtmpFuAx8w’ ‘~/tmp/scratch/RtmpG6j9XL’   ‘~/tmp/scratch/RtmpGPZHRs’ ‘~/tmp/scratch/RtmpHRIbZf’   ‘~/tmp/scratch/RtmpHiZzoZ’ ‘~/tmp/scratch/RtmpHxwkFM’   ‘~/tmp/scratch/RtmpI1k7pc’ ‘~/tmp/scratch/RtmpI8nl69’   ‘~/tmp/scratch/RtmpId2Sui’ ‘~/tmp/scratch/RtmpJNAVJh’   ‘~/tmp/scratch/RtmpK9Idlw’ ‘~/tmp/scratch/RtmpKUmIcB’   ‘~/tmp/scratch/RtmpKjmedu’ ‘~/tmp/scratch/RtmpL2o6r0’   ‘~/tmp/scratch/RtmpLIqtDx’ ‘~/tmp/scratch/RtmpLJrDkZ’   ‘~/tmp/scratch/RtmpLn1rxq’ ‘~/tmp/scratch/RtmpLrtjgw’   ‘~/tmp/scratch/RtmpLssrK5’ ‘~/tmp/scratch/RtmpMbahGF’   ‘~/tmp/scratch/RtmpO1Auv0’ ‘~/tmp/scratch/RtmpOExdIp’   ‘~/tmp/scratch/RtmpOZZy5K’ ‘~/tmp/scratch/RtmpOgTEev’   ‘~/tmp/scratch/RtmpOubHZ8’ ‘~/tmp/scratch/RtmpOws0yR’   ‘~/tmp/scratch/RtmpP46x4B’ ‘~/tmp/scratch/RtmpPP2ifr’   ‘~/tmp/scratch/RtmpPtTCun’ ‘~/tmp/scratch/RtmpQ1KVg2’   ‘~/tmp/scratch/RtmpQee5mL’ ‘~/tmp/scratch/RtmpRAHEj3’   ‘~/tmp/scratch/RtmpRuILzA’ ‘~/tmp/scratch/RtmpSF0BqL’   ‘~/tmp/scratch/RtmpSFGxQy’ ‘~/tmp/scratch/RtmpSSDmgy’   ‘~/tmp/scratch/RtmpSW5Hb8’ ‘~/tmp/scratch/RtmpSf3pG0’   ‘~/tmp/scratch/RtmpSlgvzb’ ‘~/tmp/scratch/RtmpTXXbyb’   ‘~/tmp/scratch/RtmpTa48vM’ ‘~/tmp/scratch/RtmpTlS6Kk’   ‘~/tmp/scratch/RtmpUe1oWw’ ‘~/tmp/scratch/RtmpUjHdGn’   ‘~/tmp/scratch/RtmpW47Sum’ ‘~/tmp/scratch/RtmpW8R7fy’   ‘~/tmp/scratch/RtmpW9EhSn’ ‘~/tmp/scratch/RtmpWUtaAt’   ‘~/tmp/scratch/RtmpWsKFAa’ ‘~/tmp/scratch/RtmpXGDxz3’   ‘~/tmp/scratch/RtmpXGlM9f’ ‘~/tmp/scratch/RtmpY6ZTmO’   ‘~/tmp/scratch/RtmpYJR0Bc’ ‘~/tmp/scratch/RtmpYX4LY6’   ‘~/tmp/scratch/Rtmpa5oxGS’ ‘~/tmp/scratch/RtmpaPY2Vb’   ‘~/tmp/scratch/RtmpaprJ7g’ ‘~/tmp/scratch/RtmpauJw92’   ‘~/tmp/scratch/RtmpbCEThk’ ‘~/tmp/scratch/RtmpbkuBS2’   ‘~/tmp/scratch/Rtmpbsafkn’ ‘~/tmp/scratch/RtmpcTpSkY’   ‘~/tmp/scratch/RtmpcTvzRl’ ‘~/tmp/scratch/RtmpdaY53c’   ‘~/tmp/scratch/RtmpdkCzfo’ ‘~/tmp/scratch/Rtmpe5etLH’   ‘~/tmp/scratch/RtmpeOeC2i’ ‘~/tmp/scratch/RtmpehnjxZ’   ‘~/tmp/scratch/Rtmpf8hXwW’ ‘~/tmp/scratch/RtmpfXLx5q’   ‘~/tmp/scratch/Rtmpgmzsb8’ ‘~/tmp/scratch/RtmpguFaVZ’   ‘~/tmp/scratch/Rtmph4sC8A’ ‘~/tmp/scratch/RtmphF6NiU’   ‘~/tmp/scratch/RtmphRnt1R’ ‘~/tmp/scratch/RtmphS34uv’   ‘~/tmp/scratch/RtmpiWDUsg’ ‘~/tmp/scratch/RtmpiWFGPN’   ‘~/tmp/scratch/Rtmpiudg1a’ ‘~/tmp/scratch/RtmpivxrOQ’   ‘~/tmp/scratch/RtmpjjQ0eC’ ‘~/tmp/scratch/RtmpjsZyCI’   ‘~/tmp/scratch/RtmpkNvp1s’ ‘~/tmp/scratch/Rtmpka1V53’   ‘~/tmp/scratch/RtmpkfRUgy’ ‘~/tmp/scratch/RtmplTEfue’   ‘~/tmp/scratch/RtmplfKTkY’ ‘~/tmp/scratch/RtmpmGZHHt’   ‘~/tmp/scratch/RtmpmUInNb’ ‘~/tmp/scratch/RtmpmgDTTo’   ‘~/tmp/scratch/Rtmpmxz0O5’ ‘~/tmp/scratch/Rtmpn40iA9’   ‘~/tmp/scratch/RtmpnLY4CM’ ‘~/tmp/scratch/Rtmpo9fSxI’   ‘~/tmp/scratch/RtmpoCXuAv’ ‘~/tmp/scratch/RtmpoDaWTK’   ‘~/tmp/scratch/RtmpojSBY1’ ‘~/tmp/scratch/RtmpoqD3Ob’   ‘~/tmp/scratch/RtmppT31Z3’ ‘~/tmp/scratch/RtmpqMkf7O’   ‘~/tmp/scratch/Rtmpr02VTt’ ‘~/tmp/scratch/RtmprGyly2’   ‘~/tmp/scratch/RtmpsMUw4Y’ ‘~/tmp/scratch/RtmpsRoy6C’   ‘~/tmp/scratch/RtmpsUtdOn’ ‘~/tmp/scratch/Rtmpt29mkd’   ‘~/tmp/scratch/RtmpuBDuxL’ ‘~/tmp/scratch/RtmpuzOxle’   ‘~/tmp/scratch/Rtmpv22XkR’ ‘~/tmp/scratch/RtmpvFbAdS’   ‘~/tmp/scratch/RtmpvM5lcr’ ‘~/tmp/scratch/RtmpvbsXAH’   ‘~/tmp/scratch/Rtmpw5I19k’ ‘~/tmp/scratch/RtmpwFLXDh’   ‘~/tmp/scratch/Rtmpwm18ef’ ‘~/tmp/scratch/Rtmpx5Y2oh’   ‘~/tmp/scratch/RtmpxUHIM6’ ‘~/tmp/scratch/RtmpxXAOa5’   ‘~/tmp/scratch/Rtmpxenya8’ ‘~/tmp/scratch/Rtmpy9iqlq’   ‘~/tmp/scratch/RtmpyDQSvb’ ‘~/tmp/scratch/RtmpyHH9lj’   ‘~/tmp/scratch/RtmpyTshwO’ ‘~/tmp/scratch/Rtmpyaftyo’   ‘~/tmp/scratch/RtmpzumBNP’ ‘~/tmp/scratch/ccuOJTUL.s’   ‘~/tmp/scratch/xvfb-run.1w0AgB’ ‘~/tmp/scratch/xvfb-run.2DU25B’   ‘~/tmp/scratch/xvfb-run.3R6dVr’ ‘~/tmp/scratch/xvfb-run.3Xd5pi’   ‘~/tmp/scratch/xvfb-run.5xEeK6’ ‘~/tmp/scratch/xvfb-run.6KJrfR’   ‘~/tmp/scratch/xvfb-run.7JaIFV’ ‘~/tmp/scratch/xvfb-run.86PTTR’   ‘~/tmp/scratch/xvfb-run.8E55tV’ ‘~/tmp/scratch/xvfb-run.95vnMb’   ‘~/tmp/scratch/xvfb-run.9XVGgr’ ‘~/tmp/scratch/xvfb-run.AEaM7R’   ‘~/tmp/scratch/xvfb-run.B4Xm4K’ ‘~/tmp/scratch/xvfb-run.BrUjt0’   ‘~/tmp/scratch/xvfb-run.C0VPlN’ ‘~/tmp/scratch/xvfb-run.CfH4ju’   ‘~/tmp/scratch/xvfb-run.D9jEEr’ ‘~/tmp/scratch/xvfb-run.DCKB5M’   ‘~/tmp/scratch/xvfb-run.FAYTx0’ ‘~/tmp/scratch/xvfb-run.FpbAzJ’   ‘~/tmp/scratch/xvfb-run.GfHvmA’ ‘~/tmp/scratch/xvfb-run.HNgHiF’   ‘~/tmp/scratch/xvfb-run.IDQ0F4’ ‘~/tmp/scratch/xvfb-run.IqYgJF’   ‘~/tmp/scratch/xvfb-run.IztM9L’ ‘~/tmp/scratch/xvfb-run.KItaIP’   ‘~/tmp/scratch/xvfb-run.KMMMmh’ ‘~/tmp/scratch/xvfb-run.KVpej6’   ‘~/tmp/scratch/xvfb-run.Kxs1cQ’ ‘~/tmp/scratch/xvfb-run.LAgcVj’   ‘~/tmp/scratch/xvfb-run.LBxic4’ ‘~/tmp/scratch/xvfb-run.MMQ204’   ‘~/tmp/scratch/xvfb-run.OENTjS’ ‘~/tmp/scratch/xvfb-run.Oa3cOT’   ‘~/tmp/scratch/xvfb-run.OobOzM’ ‘~/tmp/scratch/xvfb-run.Pqkr5V’   ‘~/tmp/scratch/xvfb-run.R1HOxl’ ‘~/tmp/scratch/xvfb-run.RlTJue’   ‘~/tmp/scratch/xvfb-run.S0VKkY’ ‘~/tmp/scratch/xvfb-run.SJyLnm’   ‘~/tmp/scratch/xvfb-run.SNJzB8’ ‘~/tmp/scratch/xvfb-run.Sv6EN7’   ‘~/tmp/scratch/xvfb-run.UkQJ7P’ ‘~/tmp/scratch/xvfb-run.UqW2cC’   ‘~/tmp/scratch/xvfb-run.WfjEOA’ ‘~/tmp/scratch/xvfb-run.X55KeK’   ‘~/tmp/scratch/xvfb-run.ZO6uNg’ ‘~/tmp/scratch/xvfb-run.a6DYFt’   ‘~/tmp/scratch/xvfb-run.bAaQOD’ ‘~/tmp/scratch/xvfb-run.eJhIWn’   ‘~/tmp/scratch/xvfb-run.fIwopq’ ‘~/tmp/scratch/xvfb-run.fLLm0e’   ‘~/tmp/scratch/xvfb-run.hlOmq4’ ‘~/tmp/scratch/xvfb-run.jZ8gmo’   ‘~/tmp/scratch/xvfb-run.kZEnAD’ ‘~/tmp/scratch/xvfb-run.kfUTSg’   ‘~/tmp/scratch/xvfb-run.kjtbZ8’ ‘~/tmp/scratch/xvfb-run.klTJrS’   ‘~/tmp/scratch/xvfb-run.l6sAly’ ‘~/tmp/scratch/xvfb-run.nA2iKW’   ‘~/tmp/scratch/xvfb-run.nDjaeu’ ‘~/tmp/scratch/xvfb-run.nJVpCc’   ‘~/tmp/scratch/xvfb-run.p0VgSs’ ‘~/tmp/scratch/xvfb-run.pHUxQE’   ‘~/tmp/scratch/xvfb-run.pYujlE’ ‘~/tmp/scratch/xvfb-run.qIWxsQ’   ‘~/tmp/scratch/xvfb-run.qN9xwV’ ‘~/tmp/scratch/xvfb-run.raZMoi’   ‘~/tmp/scratch/xvfb-run.tBeIcb’ ‘~/tmp/scratch/xvfb-run.tMv5HE’   ‘~/tmp/scratch/xvfb-run.ugxzjo’ ‘~/tmp/scratch/xvfb-run.vAzlcR’   ‘~/tmp/scratch/xvfb-run.wpPyry’ ‘~/tmp/scratch/xvfb-run.yP0Ask’   ‘~/tmp/scratch/xvfb-run.yaR7sG’ ‘~/tmp/scratch/xvfb-run.z7ZQZJ’   ‘~/tmp/scratch/xvfb-run.zA3c44’   ‘/dev/shm/sem.baa25a2a-c02e-4e9a-a9a8-55c8118a36da_bigmemory_counter_mutex’
• DONE

Status: 1 NOTE