• using R Under development (unstable) (2026-08-12 r90394)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-13 12:27:33 UTC
• checking for file ‘PFIM/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PFIM’ version ‘7.0.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PFIM’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [2s/5s] OK
• checking whether startup messages can be suppressed ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/29s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... INFO Exported functions without usage information:   Dcriterion adjustGradient   checkSamplingTimeConstraintsForMetaheuristic   checkValiditySamplingConstraint convertPKModelAnalyticToPKModelODE   defineModelAdministration defineModelWrapper definePKModel   definePKPDModel evaluateDesign evaluateErrorModelDerivatives   evaluateFim evaluateInitialConditions evaluateModel   evaluateModelGradient evaluateModelVariance evaluateVarianceFIM   finiteDifferenceHessian fisherSimplex generateDosesCombination   generateReportEvaluation generateReportOptimization   generateSamplingTimesCombination   generateSamplingsFromSamplingConstraints getModelParametersData   plotFrequenciesFedorovWynnAlgorithm plotRSEFIM plotSEFIM   plotShrinkage plotWeightsMultiplicativeAlgorithm setEvaluationFim   setOptimalArms setSamplingConstraintForOptimization showFIM   tablesForReport
• checking Rd \usage sections ... OK
• checking Rd contents ... NOTE Rd files without \usage:   ‘Dcriterion.Rd’ ‘adjustGradient.Rd’   ‘checkSamplingTimeConstraintsForMetaheuristic.Rd’   ‘checkValiditySamplingConstraint.Rd’   ‘convertPKModelAnalyticToPKModelODE.Rd’   ‘defineModelAdministration.Rd’ ‘defineModelWrapper.Rd’   ‘definePKModel.Rd’ ‘definePKPDModel.Rd’ ‘evaluateDesign.Rd’   ‘evaluateErrorModelDerivatives.Rd’ ‘evaluateFim.Rd’   ‘evaluateInitialConditions.Rd’ ‘evaluateModel.Rd’   ‘evaluateModelGradient.Rd’ ‘evaluateModelVariance.Rd’   ‘evaluateVarianceFIM.Rd’ ‘finiteDifferenceHessian.Rd’   ‘fisherSimplex.Rd’ ‘generateDosesCombination.Rd’   ‘generateReportEvaluation.Rd’ ‘generateReportOptimization.Rd’   ‘generateSamplingTimesCombination.Rd’   ‘generateSamplingsFromSamplingConstraints.Rd’ ‘getModelErrorData.Rd’   ‘getModelParametersData.Rd’ ‘plotFrequenciesFedorovWynnAlgorithm.Rd’   ‘plotRSEFIM.Rd’ ‘plotSEFIM.Rd’ ‘plotShrinkage.Rd’   ‘plotWeightsMultiplicativeAlgorithm.Rd’ ‘setEvaluationFim.Rd’   ‘setOptimalArms.Rd’ ‘setSamplingConstraintForOptimization.Rd’   ‘showFIM.Rd’ ‘tablesForReport.Rd’ \arguments should not be documented without \usage.
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/10s] OK   Running ‘testthat.R’ [8s/9s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [11s/14s] OK
• checking PDF version of manual ... [9s/12s] OK
• checking HTML version of manual ... [3s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE