• using R Under development (unstable) (2026-07-23 r90295)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-2) 16.1.0     GNU Fortran (Debian 16.1.0-2) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-24 12:22:37 UTC
• checking for file ‘PFIM/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PFIM’ version ‘7.0.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Package in Depends/Imports which should probably only be in LinkingTo: ‘RcppArmadillo’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PFIM’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/4s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking whether startup messages can be suppressed ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/27s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... NOTE Rd files without \usage:   ‘Dcriterion.Rd’ ‘adjustGradient.Rd’   ‘checkSamplingTimeConstraintsForMetaheuristic.Rd’   ‘checkValiditySamplingConstraint.Rd’   ‘convertPKModelAnalyticToPKModelODE.Rd’   ‘defineModelAdministration.Rd’ ‘defineModelWrapper.Rd’   ‘definePKModel.Rd’ ‘definePKPDModel.Rd’ ‘evaluateDesign.Rd’   ‘evaluateErrorModelDerivatives.Rd’ ‘evaluateFim.Rd’   ‘evaluateInitialConditions.Rd’ ‘evaluateModel.Rd’   ‘evaluateModelGradient.Rd’ ‘evaluateModelVariance.Rd’   ‘evaluateVarianceFIM.Rd’ ‘finiteDifferenceHessian.Rd’   ‘fisherSimplex.Rd’ ‘generateDosesCombination.Rd’   ‘generateReportEvaluation.Rd’ ‘generateReportOptimization.Rd’   ‘generateSamplingTimesCombination.Rd’   ‘generateSamplingsFromSamplingConstraints.Rd’ ‘getModelErrorData.Rd’   ‘getModelParametersData.Rd’ ‘plotFrequenciesFedorovWynnAlgorithm.Rd’   ‘plotRSEFIM.Rd’ ‘plotSEFIM.Rd’ ‘plotShrinkage.Rd’   ‘plotWeightsMultiplicativeAlgorithm.Rd’ ‘setEvaluationFim.Rd’   ‘setOptimalArms.Rd’ ‘setSamplingConstraintForOptimization.Rd’   ‘showFIM.Rd’ ‘tablesForReport.Rd’ \arguments should not be documented without \usage.
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/10s] OK   Running ‘testthat.R’ [8s/9s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [11s/14s] OK
• checking PDF version of manual ... [9s/13s] OK
• checking HTML version of manual ... [3s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE