* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘PCMBaseCpp’ ...
** package ‘PCMBaseCpp’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxxPFnK/R.INSTALL1da5803cc5d94e/PCMBaseCpp/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -DARMA_DONT_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -c Rcpp.cpp -o Rcpp.o
In file included from QuadraticPoly.h:27,
from QuadraticPolyWhite.h:28,
from Rcpp.cpp:30:
SPLITT.h:2053: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2053 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2071: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2071 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2084: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2084 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2096: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2096 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2106: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2106 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2132: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2132 | #pragma omp parallel
|
SPLITT.h:2134: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2134 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2145: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas]
2145 | #pragma omp barrier
|
SPLITT.h:2148: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2148 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2159: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas]
2159 | #pragma omp barrier
|
SPLITT.h:2162: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2162 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2178: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2178 | #pragma omp parallel
|
SPLITT.h:2187: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2187 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2197: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2197 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2223: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2223 | #pragma omp parallel
|
SPLITT.h:2263: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2263 | #pragma omp parallel
|
SPLITT.h:2265: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2265 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2276: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2276 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2290: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2290 | #pragma omp parallel
|
SPLITT.h:2292: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2292 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2300: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2300 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2311: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2311 | #pragma omp parallel
|
SPLITT.h:2320: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2320 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2331: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas]
2331 | #pragma omp barrier
|
SPLITT.h:2334: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2334 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2343: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2343 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2357: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2357 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2375: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2375 | #pragma omp parallel
|
SPLITT.h:2384: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2384 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2395: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas]
2395 | #pragma omp barrier
|
SPLITT.h:2398: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2398 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2408: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2408 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2423: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2423 | #pragma omp parallel
|
SPLITT.h:2432: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2432 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2442: warning: ignoring ‘#pragma omp barrier’ [-Wunknown-pragmas]
2442 | #pragma omp barrier
|
SPLITT.h:2445: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2445 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2463: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2463 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2607: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2607 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2621: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2621 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2630: warning: ignoring ‘#pragma omp simd’ [-Wunknown-pragmas]
2630 | _PRAGMA_OMP_SIMD
|
SPLITT.h:2638: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
2638 | #pragma omp parallel
|
SPLITT.h:2647: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2647 | _PRAGMA_OMP_FOR_SIMD
|
SPLITT.h:2656: warning: ignoring ‘#pragma omp for’ [-Wunknown-pragmas]
2656 | _PRAGMA_OMP_FOR_SIMD
|
QuadraticPoly.h: In instantiation of ‘bool PCMBaseCpp::IsDiagonal(const MatType&) [with MatType = arma::Mat<double>]’:
QuadraticPoly.h:94:16: required from ‘void PCMBaseCpp::DecomposeH(MatEigvalType&, CubeEigvecType&, CubeEigvecType&, const CubeHType&, arma::uword, double) [with MatEigvalType = arma::Mat<std::complex<double> >; CubeEigvecType = arma::Cube<std::complex<double> >; CubeHType = arma::Cube<double>; arma::uword = unsigned int]’
QuadraticPolyOU.h:152:17: required from ‘arma::uword PCMBaseCpp::CondGaussianOU<TreeType, DataType>::SetParameter(const std::vector<double>&, arma::uword) [with TreeType = SPLITT::OrderedTree<unsigned int, PCMBaseCpp::LengthAndRegime>; DataType = PCMBaseCpp::NumericTraitData<unsigned int>; arma::uword = unsigned int]’
QuadraticPolyOU.h:203:28: required from here
QuadraticPoly.h:47:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
47 | for(int i = 0; i < X.n_rows; ++i) {
| ~~^~~~~~~~~~
QuadraticPoly.h:48:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
48 | for(int j = i + 1; j < X.n_cols; ++j) {
| ~~^~~~~~~~~~
SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::White]’:
SPLITT.h:1930:46: required from ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::White; ModeType = SPLITT::PostOrderMode]’
SPLITT.h:623:28: required from ‘SPLITT::TraversalTask<TraversalSpecification>::StateType SPLITT::TraversalTask<TraversalSpecification>::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::White; StateType = arma::Col<double>; ParameterType = std::vector<double>; SPLITT::uint = unsigned int]’
QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper<TraversalSpec>::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::White; std::string = std::__cxx11::basic_string<char>; ParameterType = std::vector<double>; PCMBaseCpp::uint = unsigned int]’
Rcpp.cpp:265:53: required from here
SPLITT.h:2180:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable]
2180 | uint tid;
| ^~~
SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::BM]’:
SPLITT.h:1930:46: required from ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::BM; ModeType = SPLITT::PostOrderMode]’
SPLITT.h:623:28: required from ‘SPLITT::TraversalTask<TraversalSpecification>::StateType SPLITT::TraversalTask<TraversalSpecification>::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::BM; StateType = arma::Col<double>; ParameterType = std::vector<double>; SPLITT::uint = unsigned int]’
QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper<TraversalSpec>::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::BM; std::string = std::__cxx11::basic_string<char>; ParameterType = std::vector<double>; PCMBaseCpp::uint = unsigned int]’
Rcpp.cpp:335:48: required from here
SPLITT.h:2180:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable]
SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::BM1D]’:
SPLITT.h:1930:46: required from ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::BM1D; ModeType = SPLITT::PostOrderMode]’
SPLITT.h:623:28: required from ‘SPLITT::TraversalTask<TraversalSpecification>::StateType SPLITT::TraversalTask<TraversalSpecification>::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::BM1D; StateType = arma::Col<double>; ParameterType = std::vector<double>; SPLITT::uint = unsigned int]’
QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper<TraversalSpec>::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::BM1D; std::string = std::__cxx11::basic_string<char>; ParameterType = std::vector<double>; PCMBaseCpp::uint = unsigned int]’
Rcpp.cpp:407:52: required from here
SPLITT.h:2180:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable]
SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::OU]’:
SPLITT.h:1930:46: required from ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::OU; ModeType = SPLITT::PostOrderMode]’
SPLITT.h:623:28: required from ‘SPLITT::TraversalTask<TraversalSpecification>::StateType SPLITT::TraversalTask<TraversalSpecification>::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::OU; StateType = arma::Col<double>; ParameterType = std::vector<double>; SPLITT::uint = unsigned int]’
QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper<TraversalSpec>::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::OU; std::string = std::__cxx11::basic_string<char>; ParameterType = std::vector<double>; PCMBaseCpp::uint = unsigned int]’
Rcpp.cpp:477:48: required from here
SPLITT.h:2180:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable]
SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::OU1D]’:
SPLITT.h:1930:46: required from ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::OU1D; ModeType = SPLITT::PostOrderMode]’
SPLITT.h:623:28: required from ‘SPLITT::TraversalTask<TraversalSpecification>::StateType SPLITT::TraversalTask<TraversalSpecification>::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::OU1D; StateType = arma::Col<double>; ParameterType = std::vector<double>; SPLITT::uint = unsigned int]’
QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper<TraversalSpec>::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::OU1D; std::string = std::__cxx11::basic_string<char>; ParameterType = std::vector<double>; PCMBaseCpp::uint = unsigned int]’
Rcpp.cpp:546:52: required from here
SPLITT.h:2180:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable]
SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::JOU]’:
SPLITT.h:1930:46: required from ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::JOU; ModeType = SPLITT::PostOrderMode]’
SPLITT.h:623:28: required from ‘SPLITT::TraversalTask<TraversalSpecification>::StateType SPLITT::TraversalTask<TraversalSpecification>::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::JOU; StateType = arma::Col<double>; ParameterType = std::vector<double>; SPLITT::uint = unsigned int]’
QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper<TraversalSpec>::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::JOU; std::string = std::__cxx11::basic_string<char>; ParameterType = std::vector<double>; PCMBaseCpp::uint = unsigned int]’
Rcpp.cpp:620:49: required from here
SPLITT.h:2180:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable]
SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::DOU]’:
SPLITT.h:1930:46: required from ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::DOU; ModeType = SPLITT::PostOrderMode]’
SPLITT.h:623:28: required from ‘SPLITT::TraversalTask<TraversalSpecification>::StateType SPLITT::TraversalTask<TraversalSpecification>::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::DOU; StateType = arma::Col<double>; ParameterType = std::vector<double>; SPLITT::uint = unsigned int]’
QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper<TraversalSpec>::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::DOU; std::string = std::__cxx11::basic_string<char>; ParameterType = std::vector<double>; PCMBaseCpp::uint = unsigned int]’
Rcpp.cpp:689:49: required from here
SPLITT.h:2180:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable]
SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::MixedGaussian]’:
SPLITT.h:1930:46: required from ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::MixedGaussian; ModeType = SPLITT::PostOrderMode]’
SPLITT.h:623:28: required from ‘SPLITT::TraversalTask<TraversalSpecification>::StateType SPLITT::TraversalTask<TraversalSpecification>::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::MixedGaussian; StateType = arma::Col<double>; ParameterType = std::vector<double>; SPLITT::uint = unsigned int]’
QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper<TraversalSpec>::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::MixedGaussian; std::string = std::__cxx11::basic_string<char>; ParameterType = std::vector<double>; PCMBaseCpp::uint = unsigned int]’
Rcpp.cpp:762:61: required from here
SPLITT.h:2180:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable]
SPLITT.h: In instantiation of ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTreeMultiThreadLoopVisits() [with TraversalSpecification = PCMBaseCpp::MixedGaussian1D]’:
SPLITT.h:1930:46: required from ‘void SPLITT::PostOrderTraversal<TraversalSpecification>::TraverseTree(ModeType) [with TraversalSpecification = PCMBaseCpp::MixedGaussian1D; ModeType = SPLITT::PostOrderMode]’
SPLITT.h:623:28: required from ‘SPLITT::TraversalTask<TraversalSpecification>::StateType SPLITT::TraversalTask<TraversalSpecification>::TraverseTree(const ParameterType&, SPLITT::uint) [with TraversalSpecification = PCMBaseCpp::MixedGaussian1D; StateType = arma::Col<double>; ParameterType = std::vector<double>; SPLITT::uint = unsigned int]’
QuadraticPolyCommon.h:128:31: required from ‘std::string PCMBaseCpp::TraversalTaskWrapper<TraversalSpec>::TraverseTree(const ParameterType&, PCMBaseCpp::uint) [with TraversalSpec = PCMBaseCpp::MixedGaussian1D; std::string = std::__cxx11::basic_string<char>; ParameterType = std::vector<double>; PCMBaseCpp::uint = unsigned int]’
Rcpp.cpp:834:63: required from here
SPLITT.h:2180:8: warning: variable ‘tid’ set but not used [-Wunused-but-set-variable]
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o PCMBaseCpp.so Rcpp.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxxPFnK/R.INSTALL1da5803cc5d94e/PCMBaseCpp/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxxPFnK/R.INSTALL1da5803cc5d94e/PCMBaseCpp/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxxPFnK/R.INSTALL1da5803cc5d94e/PCMBaseCpp/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-PCMBaseCpp/00new/PCMBaseCpp/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PCMBaseCpp)