• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 12:22:36 UTC
• checking for file ‘PAS/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PAS’ version ‘1.2.5’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Zhiqiu Hu <zhiqiu.hu@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = c("Zhiqiu", "Hu;", "Shizhong", "Xu;", "Zhiquan", "Wang;", "Rongcai"),                       family = "Yang",                       role = "aut"),                person(given = "Zhiqiu",                       family = "Hu",                       role = "cre",                       email = "zhiqiu.hu@gmail.com")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘PAS’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/14s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) PAS-package.Rd:30: Lost braces     30 | {\code{bin model}}{\cr Zhiqiu Hu, Zhiquan Wang, and Shizhong Xu (2012) An infinitesimal model for quantitative trait genomic value prediction. PloS ONE 7: e41336.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [7s/10s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp05HgWP’ ‘~/tmp/scratch/Rtmp13lpBE’   ‘~/tmp/scratch/Rtmp1VglKe’ ‘~/tmp/scratch/Rtmp1zWvbM’   ‘~/tmp/scratch/Rtmp3AvnHQ’ ‘~/tmp/scratch/Rtmp3L0ejr’   ‘~/tmp/scratch/Rtmp3V0mW5’ ‘~/tmp/scratch/Rtmp3vn4AG’   ‘~/tmp/scratch/Rtmp44OnCy’ ‘~/tmp/scratch/Rtmp4xb8dC’   ‘~/tmp/scratch/Rtmp57McyQ’ ‘~/tmp/scratch/Rtmp5Bxt5Y’   ‘~/tmp/scratch/Rtmp5pzPPV’ ‘~/tmp/scratch/Rtmp6YmB2p’   ‘~/tmp/scratch/Rtmp6ZjFhT’ ‘~/tmp/scratch/Rtmp6dUXOM’   ‘~/tmp/scratch/Rtmp6hPek7’ ‘~/tmp/scratch/Rtmp7iehZw’   ‘~/tmp/scratch/Rtmp7lboOp’ ‘~/tmp/scratch/Rtmp7t48Bb’   ‘~/tmp/scratch/Rtmp8KkHmq’ ‘~/tmp/scratch/Rtmp8S1R5Q’   ‘~/tmp/scratch/Rtmp8Wmr8m’ ‘~/tmp/scratch/Rtmp8hwJLf’   ‘~/tmp/scratch/Rtmp8jhYRc’ ‘~/tmp/scratch/Rtmp92Py92’   ‘~/tmp/scratch/RtmpCcQ7u6’ ‘~/tmp/scratch/RtmpCjgL5E’   ‘~/tmp/scratch/RtmpCxuX1q’ ‘~/tmp/scratch/RtmpDR7uHl’   ‘~/tmp/scratch/RtmpEGPe7m’ ‘~/tmp/scratch/RtmpFwZDCw’   ‘~/tmp/scratch/RtmpGBPUoC’ ‘~/tmp/scratch/RtmpGRDfQG’   ‘~/tmp/scratch/RtmpGZqko0’ ‘~/tmp/scratch/RtmpH5fGo2’   ‘~/tmp/scratch/RtmpHAUDox’ ‘~/tmp/scratch/RtmpHwVtir’   ‘~/tmp/scratch/RtmpIOAUuw’ ‘~/tmp/scratch/RtmpIS12dB’   ‘~/tmp/scratch/RtmpISEfgC’ ‘~/tmp/scratch/RtmpISRTB8’   ‘~/tmp/scratch/RtmpJLDpZv’ ‘~/tmp/scratch/RtmpJaIUsT’   ‘~/tmp/scratch/RtmpJkewcq’ ‘~/tmp/scratch/RtmpKaXBOV’   ‘~/tmp/scratch/RtmpKo4c3C’ ‘~/tmp/scratch/RtmpKqlblY’   ‘~/tmp/scratch/RtmpL14irD’ ‘~/tmp/scratch/RtmpL3KtBI’   ‘~/tmp/scratch/RtmpLM1LKB’ ‘~/tmp/scratch/RtmpLyVnkr’   ‘~/tmp/scratch/RtmpP11nPD’ ‘~/tmp/scratch/RtmpQa0euZ’   ‘~/tmp/scratch/RtmpQdaFf8’ ‘~/tmp/scratch/RtmpTFz2tB’   ‘~/tmp/scratch/RtmpTkOv79’ ‘~/tmp/scratch/RtmpUAfo8x’   ‘~/tmp/scratch/RtmpUJLyuq’ ‘~/tmp/scratch/RtmpUYKgSo’   ‘~/tmp/scratch/RtmpUcZklM’ ‘~/tmp/scratch/RtmpVBoH38’   ‘~/tmp/scratch/RtmpWRZOiQ’ ‘~/tmp/scratch/RtmpXpQ7nM’   ‘~/tmp/scratch/RtmpYtKuC6’ ‘~/tmp/scratch/RtmpZWcl0x’   ‘~/tmp/scratch/Rtmpa0xQrl’ ‘~/tmp/scratch/RtmpagxiyS’   ‘~/tmp/scratch/RtmpbDTq4J’ ‘~/tmp/scratch/RtmpbFHF0f’   ‘~/tmp/scratch/RtmpbgRDX4’ ‘~/tmp/scratch/RtmpcNnKCd’   ‘~/tmp/scratch/Rtmpcg5IoH’ ‘~/tmp/scratch/RtmpctLeHb’   ‘~/tmp/scratch/Rtmpd2HDNq’ ‘~/tmp/scratch/Rtmpd6EN8X’   ‘~/tmp/scratch/RtmpdYc2al’ ‘~/tmp/scratch/Rtmpdb1DYB’   ‘~/tmp/scratch/RtmpdfLQ9R’ ‘~/tmp/scratch/RtmpdkTy1V’   ‘~/tmp/scratch/RtmpeD4kzV’ ‘~/tmp/scratch/Rtmpevgly5’   ‘~/tmp/scratch/Rtmpf6Qbsp’ ‘~/tmp/scratch/RtmpfXYnwJ’   ‘~/tmp/scratch/Rtmpfz7ERR’ ‘~/tmp/scratch/RtmpgzWP7M’   ‘~/tmp/scratch/Rtmphob3R2’ ‘~/tmp/scratch/RtmpioRzGB’   ‘~/tmp/scratch/RtmpjkUhv7’ ‘~/tmp/scratch/RtmpjmpFUI’   ‘~/tmp/scratch/RtmpkDawuy’ ‘~/tmp/scratch/RtmpkUw09u’   ‘~/tmp/scratch/RtmpmHl1E5’ ‘~/tmp/scratch/RtmpnF7b5b’   ‘~/tmp/scratch/RtmpnrZY0s’ ‘~/tmp/scratch/Rtmpns6VnW’   ‘~/tmp/scratch/Rtmpns7aHw’ ‘~/tmp/scratch/RtmpoBB2r0’   ‘~/tmp/scratch/RtmppBwy0U’ ‘~/tmp/scratch/RtmppKV18f’   ‘~/tmp/scratch/RtmppbDMiU’ ‘~/tmp/scratch/Rtmppor5Hb’   ‘~/tmp/scratch/Rtmpps8D36’ ‘~/tmp/scratch/RtmppwRr1a’   ‘~/tmp/scratch/RtmpqrLe6R’ ‘~/tmp/scratch/Rtmpr2AJll’   ‘~/tmp/scratch/RtmprOxkM9’ ‘~/tmp/scratch/RtmproApEX’   ‘~/tmp/scratch/RtmpsYtM4s’ ‘~/tmp/scratch/RtmptpcetR’   ‘~/tmp/scratch/RtmpuMqvas’ ‘~/tmp/scratch/Rtmpur5fR3’   ‘~/tmp/scratch/RtmpvEpACW’ ‘~/tmp/scratch/RtmpvjhmFp’   ‘~/tmp/scratch/RtmpwJmKdl’ ‘~/tmp/scratch/RtmpwrISts’   ‘~/tmp/scratch/RtmpwzD8I7’ ‘~/tmp/scratch/Rtmpx3oEUq’   ‘~/tmp/scratch/Rtmpx9aCMk’ ‘~/tmp/scratch/RtmpxN1whS’   ‘~/tmp/scratch/RtmpxNEJdV’ ‘~/tmp/scratch/RtmpxQquo3’   ‘~/tmp/scratch/Rtmpxa3sPx’ ‘~/tmp/scratch/RtmpxzgMpY’   ‘~/tmp/scratch/Rtmpz11hUP’ ‘~/tmp/scratch/RtmpziBY8c’   ‘~/tmp/scratch/RtmpznkrJy’ ‘~/tmp/scratch/ccCZAFU8.s’   ‘~/tmp/scratch/ccuiPWsh.s’ ‘~/tmp/scratch/ccwVpt5o.s’   ‘~/tmp/scratch/xvfb-run.0hzqkD’ ‘~/tmp/scratch/xvfb-run.100Ne0’   ‘~/tmp/scratch/xvfb-run.3wIL02’ ‘~/tmp/scratch/xvfb-run.4EWNaM’   ‘~/tmp/scratch/xvfb-run.5hErE6’ ‘~/tmp/scratch/xvfb-run.6OKX1t’   ‘~/tmp/scratch/xvfb-run.6Wj1sO’ ‘~/tmp/scratch/xvfb-run.6skDHR’   ‘~/tmp/scratch/xvfb-run.8WvJNV’ ‘~/tmp/scratch/xvfb-run.8g0Yu9’   ‘~/tmp/scratch/xvfb-run.9dqN09’ ‘~/tmp/scratch/xvfb-run.BUB6aM’   ‘~/tmp/scratch/xvfb-run.FHsB33’ ‘~/tmp/scratch/xvfb-run.GSlaFy’   ‘~/tmp/scratch/xvfb-run.Kfwqo5’ ‘~/tmp/scratch/xvfb-run.OaCs4d’   ‘~/tmp/scratch/xvfb-run.SFH6x2’ ‘~/tmp/scratch/xvfb-run.SfHzpo’   ‘~/tmp/scratch/xvfb-run.SiNrWD’ ‘~/tmp/scratch/xvfb-run.TJZPe9’   ‘~/tmp/scratch/xvfb-run.Tic4Xj’ ‘~/tmp/scratch/xvfb-run.UQ4ZrY’   ‘~/tmp/scratch/xvfb-run.WBErVn’ ‘~/tmp/scratch/xvfb-run.WsT8Yc’   ‘~/tmp/scratch/xvfb-run.X5bkXm’ ‘~/tmp/scratch/xvfb-run.XF77nb’   ‘~/tmp/scratch/xvfb-run.Xp88lT’ ‘~/tmp/scratch/xvfb-run.XxF17U’   ‘~/tmp/scratch/xvfb-run.c9N9lR’ ‘~/tmp/scratch/xvfb-run.dA0WRn’   ‘~/tmp/scratch/xvfb-run.dxcFZJ’ ‘~/tmp/scratch/xvfb-run.fz0FN5’   ‘~/tmp/scratch/xvfb-run.l36uxP’ ‘~/tmp/scratch/xvfb-run.lTZLre’   ‘~/tmp/scratch/xvfb-run.mZU2kK’ ‘~/tmp/scratch/xvfb-run.mtwP7q’   ‘~/tmp/scratch/xvfb-run.n3iM06’ ‘~/tmp/scratch/xvfb-run.nUwb9o’   ‘~/tmp/scratch/xvfb-run.oNfX6y’ ‘~/tmp/scratch/xvfb-run.uv4eLI’   ‘~/tmp/scratch/xvfb-run.vZdQQt’ ‘~/tmp/scratch/xvfb-run.z4rvQX’   ‘/dev/shm/00087418-aa07-4d02-9241-2c6d145dcaa0’   ‘/dev/shm/00087418-aa07-4d02-9241-2c6d145dcaa0_counter’   ‘/dev/shm/0e910bbc-4b25-4eca-8c17-a0ece7d90db6’   ‘/dev/shm/0e910bbc-4b25-4eca-8c17-a0ece7d90db6_counter’   ‘/dev/shm/3a90dbc5-083c-49e6-9df0-43c626a1242c’   ‘/dev/shm/3a90dbc5-083c-49e6-9df0-43c626a1242c_counter’   ‘/dev/shm/3c5c0e26-c9bb-4b17-bbc4-d228680daaff’   ‘/dev/shm/3c5c0e26-c9bb-4b17-bbc4-d228680daaff_counter’   ‘/dev/shm/3f09a948-d88f-47f2-a0ca-8b509d0a98d2’   ‘/dev/shm/3f09a948-d88f-47f2-a0ca-8b509d0a98d2_counter’   ‘/dev/shm/48356ba8-ef55-420c-a492-632f00162285’   ‘/dev/shm/48356ba8-ef55-420c-a492-632f00162285_counter’   ‘/dev/shm/5cdf0dc9-e58f-48b1-b507-8e48ba4c1fb2’   ‘/dev/shm/5cdf0dc9-e58f-48b1-b507-8e48ba4c1fb2_counter’   ‘/dev/shm/7130a692-00fe-434e-ab49-caf8697cffcd’   ‘/dev/shm/7130a692-00fe-434e-ab49-caf8697cffcd_counter’   ‘/dev/shm/7914ef3d-6a51-484f-9134-8c3c541d1ded’   ‘/dev/shm/7914ef3d-6a51-484f-9134-8c3c541d1ded_counter’   ‘/dev/shm/84b512a0-a8cd-403b-9442-160e62799879’   ‘/dev/shm/84b512a0-a8cd-403b-9442-160e62799879_counter’   ‘/dev/shm/abbb6424-dbd6-4d1d-92b1-7227752a29b7’   ‘/dev/shm/abbb6424-dbd6-4d1d-92b1-7227752a29b7_counter’   ‘/dev/shm/b5e38ded-409f-4e25-bf95-0572d5ef2073’   ‘/dev/shm/b5e38ded-409f-4e25-bf95-0572d5ef2073_counter’   ‘/dev/shm/b80b88bc-1801-4a9f-969d-33ac08b64534’   ‘/dev/shm/b80b88bc-1801-4a9f-969d-33ac08b64534_counter’   ‘/dev/shm/c2304e85-88e3-48b7-9542-942750f89d0a’   ‘/dev/shm/c2304e85-88e3-48b7-9542-942750f89d0a_counter’   ‘/dev/shm/c71c778f-ad86-4392-9a85-e08b435bd85a’   ‘/dev/shm/c71c778f-ad86-4392-9a85-e08b435bd85a_counter’   ‘/dev/shm/cbd70645-493c-4818-9dfa-510d90aabb5d’   ‘/dev/shm/cbd70645-493c-4818-9dfa-510d90aabb5d_counter’   ‘/dev/shm/d682385f-6dfd-4b76-855b-c42d7173d8b9’   ‘/dev/shm/sem.00087418-aa07-4d02-9241-2c6d145dcaa0_bigmemory_counter_mutex’   ‘/dev/shm/sem.0e910bbc-4b25-4eca-8c17-a0ece7d90db6_bigmemory_counter_mutex’   ‘/dev/shm/sem.3a90dbc5-083c-49e6-9df0-43c626a1242c_bigmemory_counter_mutex’   ‘/dev/shm/sem.3c5c0e26-c9bb-4b17-bbc4-d228680daaff_bigmemory_counter_mutex’   ‘/dev/shm/sem.3f09a948-d88f-47f2-a0ca-8b509d0a98d2_bigmemory_counter_mutex’   ‘/dev/shm/sem.48356ba8-ef55-420c-a492-632f00162285_bigmemory_counter_mutex’   ‘/dev/shm/sem.5cdf0dc9-e58f-48b1-b507-8e48ba4c1fb2_bigmemory_counter_mutex’   ‘/dev/shm/sem.7130a692-00fe-434e-ab49-caf8697cffcd_bigmemory_counter_mutex’   ‘/dev/shm/sem.7914ef3d-6a51-484f-9134-8c3c541d1ded_bigmemory_counter_mutex’   ‘/dev/shm/sem.84b512a0-a8cd-403b-9442-160e62799879_bigmemory_counter_mutex’   ‘/dev/shm/sem.abbb6424-dbd6-4d1d-92b1-7227752a29b7_bigmemory_counter_mutex’   ‘/dev/shm/sem.b5e38ded-409f-4e25-bf95-0572d5ef2073_bigmemory_counter_mutex’   ‘/dev/shm/sem.b80b88bc-1801-4a9f-969d-33ac08b64534_bigmemory_counter_mutex’   ‘/dev/shm/sem.c71c778f-ad86-4392-9a85-e08b435bd85a_bigmemory_counter_mutex’
• DONE

Status: 3 NOTEs