• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 12:20:37 UTC
• checking for file ‘OmicSense/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘OmicSense’ version ‘0.2.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘OmicSense’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/5s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/2s] OK   Running ‘testthat.R’ [2s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [3s/4s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp1dVFoH’ ‘~/tmp/scratch/Rtmp2DJPTb’   ‘~/tmp/scratch/Rtmp2Nvov9’ ‘~/tmp/scratch/Rtmp3XFPgj’   ‘~/tmp/scratch/Rtmp44wMJM’ ‘~/tmp/scratch/Rtmp4XU3tC’   ‘~/tmp/scratch/Rtmp4ddNAb’ ‘~/tmp/scratch/Rtmp4m3Aj6’   ‘~/tmp/scratch/Rtmp4siu31’ ‘~/tmp/scratch/Rtmp4tJlJZ’   ‘~/tmp/scratch/Rtmp50HDsF’ ‘~/tmp/scratch/Rtmp5b5S3Z’   ‘~/tmp/scratch/Rtmp5faeIc’ ‘~/tmp/scratch/Rtmp5k4eJP’   ‘~/tmp/scratch/Rtmp64f9y6’ ‘~/tmp/scratch/Rtmp6AgwjK’   ‘~/tmp/scratch/Rtmp6QbRcH’ ‘~/tmp/scratch/Rtmp88k1QY’   ‘~/tmp/scratch/Rtmp8gGWVd’ ‘~/tmp/scratch/Rtmp8ubcTv’   ‘~/tmp/scratch/Rtmp9mCojs’ ‘~/tmp/scratch/Rtmp9om7wj’   ‘~/tmp/scratch/Rtmp9yvthY’ ‘~/tmp/scratch/RtmpA4YwX4’   ‘~/tmp/scratch/RtmpA9O82B’ ‘~/tmp/scratch/RtmpAmo8Cp’   ‘~/tmp/scratch/RtmpBB56Yo’ ‘~/tmp/scratch/RtmpBF4qAg’   ‘~/tmp/scratch/RtmpBvOT0q’ ‘~/tmp/scratch/RtmpCcoe6a’   ‘~/tmp/scratch/RtmpChi7In’ ‘~/tmp/scratch/RtmpDFIOy3’   ‘~/tmp/scratch/RtmpDjSs2Y’ ‘~/tmp/scratch/RtmpDvQ9EV’   ‘~/tmp/scratch/RtmpDzlHQ8’ ‘~/tmp/scratch/RtmpEC9Jql’   ‘~/tmp/scratch/RtmpELmClT’ ‘~/tmp/scratch/RtmpEa2UkF’   ‘~/tmp/scratch/RtmpEcTtfZ’ ‘~/tmp/scratch/RtmpGCiDlp’   ‘~/tmp/scratch/RtmpHmMKsX’ ‘~/tmp/scratch/RtmpHyqS1B’   ‘~/tmp/scratch/RtmpJ0IlFc’ ‘~/tmp/scratch/RtmpJ0rA8q’   ‘~/tmp/scratch/RtmpKBx3cP’ ‘~/tmp/scratch/RtmpKmQI95’   ‘~/tmp/scratch/RtmpLH2vE9’ ‘~/tmp/scratch/RtmpMGeXya’   ‘~/tmp/scratch/RtmpMXf7FF’ ‘~/tmp/scratch/RtmpN0LRnd’   ‘~/tmp/scratch/RtmpN1y3ue’ ‘~/tmp/scratch/RtmpNgbG0C’   ‘~/tmp/scratch/RtmpOApvdu’ ‘~/tmp/scratch/RtmpOEf1i6’   ‘~/tmp/scratch/RtmpOHPtuh’ ‘~/tmp/scratch/RtmpOqCadm’   ‘~/tmp/scratch/RtmpPZ9wyw’ ‘~/tmp/scratch/RtmpQ8N5x7’   ‘~/tmp/scratch/RtmpRC9cCT’ ‘~/tmp/scratch/RtmpRVZz9c’   ‘~/tmp/scratch/RtmpRaL4jT’ ‘~/tmp/scratch/RtmpS0cwQd’   ‘~/tmp/scratch/RtmpS4Zyq6’ ‘~/tmp/scratch/RtmpS7ZTLm’   ‘~/tmp/scratch/RtmpSAXcwM’ ‘~/tmp/scratch/RtmpT1YgU7’   ‘~/tmp/scratch/RtmpTWgo1E’ ‘~/tmp/scratch/RtmpTfaEj8’   ‘~/tmp/scratch/RtmpTz8su0’ ‘~/tmp/scratch/RtmpU2Dmx0’   ‘~/tmp/scratch/RtmpUoysQN’ ‘~/tmp/scratch/RtmpV9UaDu’   ‘~/tmp/scratch/RtmpWCgwcY’ ‘~/tmp/scratch/RtmpWP1QST’   ‘~/tmp/scratch/RtmpWY9P01’ ‘~/tmp/scratch/RtmpXMyHm8’   ‘~/tmp/scratch/RtmpXbU9YQ’ ‘~/tmp/scratch/RtmpXy6uWW’   ‘~/tmp/scratch/RtmpY0cAc9’ ‘~/tmp/scratch/RtmpZPbeY6’   ‘~/tmp/scratch/RtmpZaFefe’ ‘~/tmp/scratch/Rtmpa8udyS’   ‘~/tmp/scratch/RtmpaLDtdd’ ‘~/tmp/scratch/RtmpbKsaA6’   ‘~/tmp/scratch/RtmpboePrg’ ‘~/tmp/scratch/RtmpbxpQnG’   ‘~/tmp/scratch/RtmpcOUcUO’ ‘~/tmp/scratch/RtmpcXQ2hP’   ‘~/tmp/scratch/RtmpePg51j’ ‘~/tmp/scratch/RtmpfPFRUp’   ‘~/tmp/scratch/RtmpfPqmPl’ ‘~/tmp/scratch/RtmpfXejZT’   ‘~/tmp/scratch/RtmpgHrt8C’ ‘~/tmp/scratch/RtmpgJrpcM’   ‘~/tmp/scratch/RtmphVa0Em’ ‘~/tmp/scratch/Rtmpho1U6R’   ‘~/tmp/scratch/Rtmpid3fWm’ ‘~/tmp/scratch/RtmpiskR6t’   ‘~/tmp/scratch/RtmpjDoUej’ ‘~/tmp/scratch/RtmpjEe6CC’   ‘~/tmp/scratch/RtmpjXkanx’ ‘~/tmp/scratch/RtmpjlmlDs’   ‘~/tmp/scratch/Rtmpjs9PFd’ ‘~/tmp/scratch/Rtmpk19zsk’   ‘~/tmp/scratch/RtmpktasPk’ ‘~/tmp/scratch/RtmplJ5o8X’   ‘~/tmp/scratch/RtmplkFQ29’ ‘~/tmp/scratch/RtmpmCDnny’   ‘~/tmp/scratch/Rtmpn9R6F8’ ‘~/tmp/scratch/RtmpnN4H38’   ‘~/tmp/scratch/RtmpnPVDuC’ ‘~/tmp/scratch/RtmpnWQ6sv’   ‘~/tmp/scratch/RtmpoC98h7’ ‘~/tmp/scratch/RtmpoMPlT3’   ‘~/tmp/scratch/RtmpoSVgv9’ ‘~/tmp/scratch/RtmppSFkmk’   ‘~/tmp/scratch/RtmppklEQU’ ‘~/tmp/scratch/RtmpptkHDa’   ‘~/tmp/scratch/RtmpqvbrDz’ ‘~/tmp/scratch/RtmprKrcqK’   ‘~/tmp/scratch/RtmprbKPZ4’ ‘~/tmp/scratch/Rtmprj7myd’   ‘~/tmp/scratch/Rtmps2MOXB’ ‘~/tmp/scratch/RtmpsBr09y’   ‘~/tmp/scratch/Rtmpsb7Mu9’ ‘~/tmp/scratch/Rtmpsj9DRD’   ‘~/tmp/scratch/RtmpsxIshp’ ‘~/tmp/scratch/RtmptDZ80X’   ‘~/tmp/scratch/Rtmptez2yG’ ‘~/tmp/scratch/RtmptfNRyR’   ‘~/tmp/scratch/RtmpuLQPpL’ ‘~/tmp/scratch/RtmpuflMKu’   ‘~/tmp/scratch/RtmpuouxDl’ ‘~/tmp/scratch/RtmpvhSoUc’   ‘~/tmp/scratch/Rtmpw8BwnY’ ‘~/tmp/scratch/RtmpxETVJS’   ‘~/tmp/scratch/RtmpxRHCgL’ ‘~/tmp/scratch/RtmpyHX2HU’   ‘~/tmp/scratch/Rtmpyd65pi’ ‘~/tmp/scratch/RtmpyexUs1’   ‘~/tmp/scratch/RtmpywvY5q’ ‘~/tmp/scratch/RtmpzSyyjX’   ‘~/tmp/scratch/quarto-session24ac3533a0fafd58’   ‘~/tmp/scratch/xvfb-run.08DYHz’ ‘~/tmp/scratch/xvfb-run.0uQE6T’   ‘~/tmp/scratch/xvfb-run.2bPlLz’ ‘~/tmp/scratch/xvfb-run.3fULdu’   ‘~/tmp/scratch/xvfb-run.3wMwlr’ ‘~/tmp/scratch/xvfb-run.40l9ky’   ‘~/tmp/scratch/xvfb-run.7MpnyI’ ‘~/tmp/scratch/xvfb-run.7e36yb’   ‘~/tmp/scratch/xvfb-run.8rVgJP’ ‘~/tmp/scratch/xvfb-run.9NX7xD’   ‘~/tmp/scratch/xvfb-run.9YnEDd’ ‘~/tmp/scratch/xvfb-run.AX9WgT’   ‘~/tmp/scratch/xvfb-run.Ab2R4Y’ ‘~/tmp/scratch/xvfb-run.CPMsGd’   ‘~/tmp/scratch/xvfb-run.CXkxMU’ ‘~/tmp/scratch/xvfb-run.CcoPPT’   ‘~/tmp/scratch/xvfb-run.D0aixx’ ‘~/tmp/scratch/xvfb-run.E0AAMF’   ‘~/tmp/scratch/xvfb-run.E8OSFp’ ‘~/tmp/scratch/xvfb-run.GgUARa’   ‘~/tmp/scratch/xvfb-run.HQH3hk’ ‘~/tmp/scratch/xvfb-run.Is5ij4’   ‘~/tmp/scratch/xvfb-run.LiLktZ’ ‘~/tmp/scratch/xvfb-run.MEEFP6’   ‘~/tmp/scratch/xvfb-run.Oac5yL’ ‘~/tmp/scratch/xvfb-run.QyoFyw’   ‘~/tmp/scratch/xvfb-run.R2rx8H’ ‘~/tmp/scratch/xvfb-run.REZQl8’   ‘~/tmp/scratch/xvfb-run.SQuBet’ ‘~/tmp/scratch/xvfb-run.UdFvbu’   ‘~/tmp/scratch/xvfb-run.VyhWqR’ ‘~/tmp/scratch/xvfb-run.W4IdVZ’   ‘~/tmp/scratch/xvfb-run.Xg11uq’ ‘~/tmp/scratch/xvfb-run.bc0xAG’   ‘~/tmp/scratch/xvfb-run.bluFld’ ‘~/tmp/scratch/xvfb-run.d7jUTJ’   ‘~/tmp/scratch/xvfb-run.dSyjke’ ‘~/tmp/scratch/xvfb-run.diAO5d’   ‘~/tmp/scratch/xvfb-run.ei4lbJ’ ‘~/tmp/scratch/xvfb-run.f3azrc’   ‘~/tmp/scratch/xvfb-run.g0eeUR’ ‘~/tmp/scratch/xvfb-run.ipQvOP’   ‘~/tmp/scratch/xvfb-run.j6zEoX’ ‘~/tmp/scratch/xvfb-run.kI4cnw’   ‘~/tmp/scratch/xvfb-run.mub6G9’ ‘~/tmp/scratch/xvfb-run.ng5hCc’   ‘~/tmp/scratch/xvfb-run.nrfLxk’ ‘~/tmp/scratch/xvfb-run.sQdKnx’   ‘~/tmp/scratch/xvfb-run.vxHHGf’ ‘~/tmp/scratch/xvfb-run.w9JWfQ’   ‘~/tmp/scratch/xvfb-run.wgWWBh’ ‘~/tmp/scratch/xvfb-run.wr0Vu3’   ‘~/tmp/scratch/xvfb-run.yLasMx’ ‘~/tmp/scratch/xvfb-run.z9G5Ky’   ‘/dev/shm/11de1675-d9b8-487c-9ab8-ec24703b368f’   ‘/dev/shm/11de1675-d9b8-487c-9ab8-ec24703b368f_counter’   ‘/dev/shm/14391081-371e-42f2-823c-4b049ac462a3’   ‘/dev/shm/14391081-371e-42f2-823c-4b049ac462a3_counter’   ‘/dev/shm/29545e2d-07d8-48e7-a729-2e404c5641a0’   ‘/dev/shm/29545e2d-07d8-48e7-a729-2e404c5641a0_counter’   ‘/dev/shm/2a20e62f-3da3-4f00-b0c1-4a81683c47f8’   ‘/dev/shm/4d19a231-1e3a-47d5-a47e-2931221b35b7’   ‘/dev/shm/4d19a231-1e3a-47d5-a47e-2931221b35b7_counter’   ‘/dev/shm/5bde9960-7ac2-4de5-9e72-7fe1e5e884f1’   ‘/dev/shm/5bde9960-7ac2-4de5-9e72-7fe1e5e884f1_counter’   ‘/dev/shm/5cf0e7f0-3bf7-4c74-a11a-e7323c735089’   ‘/dev/shm/5cf0e7f0-3bf7-4c74-a11a-e7323c735089_counter’   ‘/dev/shm/6b876f43-e07b-49e9-b5ff-3ef6dbd8175d’   ‘/dev/shm/6b876f43-e07b-49e9-b5ff-3ef6dbd8175d_counter’   ‘/dev/shm/6e06e1de-ab41-4c58-83b7-3b81de1a13a6’   ‘/dev/shm/6e06e1de-ab41-4c58-83b7-3b81de1a13a6_counter’   ‘/dev/shm/8fa2bbcb-35b2-406f-ae96-b4d23f679f2a’   ‘/dev/shm/8fa2bbcb-35b2-406f-ae96-b4d23f679f2a_counter’   ‘/dev/shm/9e2f8188-b79e-4b0a-b8fb-dd9cd5e47ec1’   ‘/dev/shm/9e2f8188-b79e-4b0a-b8fb-dd9cd5e47ec1_counter’   ‘/dev/shm/dca9242e-7278-4062-889c-0e3cd5fda906’   ‘/dev/shm/dca9242e-7278-4062-889c-0e3cd5fda906_counter’   ‘/dev/shm/e47caa98-eb22-4c5d-b0c6-db5e32b793e6’   ‘/dev/shm/e47caa98-eb22-4c5d-b0c6-db5e32b793e6_counter’   ‘/dev/shm/f2e31988-5527-4f77-9159-5d0e2ae8d7be’   ‘/dev/shm/f2e31988-5527-4f77-9159-5d0e2ae8d7be_counter’   ‘/dev/shm/f7718053-2995-43f8-9d68-92276b6afeaa’   ‘/dev/shm/f7718053-2995-43f8-9d68-92276b6afeaa_counter’   ‘/dev/shm/f8c802ec-330e-40ee-9f64-aea3b856f87b’   ‘/dev/shm/f8c802ec-330e-40ee-9f64-aea3b856f87b_counter’   ‘/dev/shm/fbfdf663-cd77-4764-a00b-31c853e5a25b’   ‘/dev/shm/fbfdf663-cd77-4764-a00b-31c853e5a25b_counter’   ‘/dev/shm/sem.14391081-371e-42f2-823c-4b049ac462a3_bigmemory_counter_mutex’   ‘/dev/shm/sem.29545e2d-07d8-48e7-a729-2e404c5641a0_bigmemory_counter_mutex’   ‘/dev/shm/sem.4d19a231-1e3a-47d5-a47e-2931221b35b7_bigmemory_counter_mutex’   ‘/dev/shm/sem.5bde9960-7ac2-4de5-9e72-7fe1e5e884f1_bigmemory_counter_mutex’   ‘/dev/shm/sem.5cf0e7f0-3bf7-4c74-a11a-e7323c735089_bigmemory_counter_mutex’   ‘/dev/shm/sem.6b876f43-e07b-49e9-b5ff-3ef6dbd8175d_bigmemory_counter_mutex’   ‘/dev/shm/sem.6e06e1de-ab41-4c58-83b7-3b81de1a13a6_bigmemory_counter_mutex’   ‘/dev/shm/sem.8fa2bbcb-35b2-406f-ae96-b4d23f679f2a_bigmemory_counter_mutex’   ‘/dev/shm/sem.9e2f8188-b79e-4b0a-b8fb-dd9cd5e47ec1_bigmemory_counter_mutex’   ‘/dev/shm/sem.dca9242e-7278-4062-889c-0e3cd5fda906_bigmemory_counter_mutex’   ‘/dev/shm/sem.e47caa98-eb22-4c5d-b0c6-db5e32b793e6_bigmemory_counter_mutex’   ‘/dev/shm/sem.f2e31988-5527-4f77-9159-5d0e2ae8d7be_bigmemory_counter_mutex’   ‘/dev/shm/sem.f7718053-2995-43f8-9d68-92276b6afeaa_bigmemory_counter_mutex’   ‘/dev/shm/sem.f8c802ec-330e-40ee-9f64-aea3b856f87b_bigmemory_counter_mutex’   ‘/dev/shm/sem.fbfdf663-cd77-4764-a00b-31c853e5a25b_bigmemory_counter_mutex’   ‘~/.cache/pocl/uncached/tempfile_YEMdGO’   ‘~/.cache/pocl/uncached/tempfile_ewFpfL’   ‘~/.cache/pocl/uncached/tempfile_g4HK3b’
• DONE

Status: 1 NOTE