• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 12:20:08 UTC
• checking for file ‘NewmanOmics/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘NewmanOmics’ version ‘1.1.3’
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘NewmanOmics’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/6s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [25s/31s] OK   Running ‘00-pairedTest.R’ [8s/10s]   Comparing ‘00-pairedTest.Rout’ to ‘00-pairedTest.Rout.save’ ... OK   Running ‘01-testTeho.R’ [16s/20s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [5s/6s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0POWB6’ ‘~/tmp/scratch/Rtmp0kDD6s’   ‘~/tmp/scratch/Rtmp0t94n8’ ‘~/tmp/scratch/Rtmp0wswlc’   ‘~/tmp/scratch/Rtmp0xo6Pg’ ‘~/tmp/scratch/Rtmp1Pbdf7’   ‘~/tmp/scratch/Rtmp1bLAW2’ ‘~/tmp/scratch/Rtmp22Tw09’   ‘~/tmp/scratch/Rtmp289HIc’ ‘~/tmp/scratch/Rtmp2esmU0’   ‘~/tmp/scratch/Rtmp3qp2Ex’ ‘~/tmp/scratch/Rtmp46y2oc’   ‘~/tmp/scratch/Rtmp4NWvo3’ ‘~/tmp/scratch/Rtmp4ypc6J’   ‘~/tmp/scratch/Rtmp61qfkz’ ‘~/tmp/scratch/Rtmp62uz5w’   ‘~/tmp/scratch/Rtmp64Bywh’ ‘~/tmp/scratch/Rtmp74vRz2’   ‘~/tmp/scratch/Rtmp7hlPLU’ ‘~/tmp/scratch/Rtmp7pLO6B’   ‘~/tmp/scratch/Rtmp8YPo0n’ ‘~/tmp/scratch/Rtmp8s3hdz’   ‘~/tmp/scratch/Rtmp8sG1zP’ ‘~/tmp/scratch/Rtmp94EX6F’   ‘~/tmp/scratch/Rtmp9ytftX’ ‘~/tmp/scratch/RtmpAkiT1v’   ‘~/tmp/scratch/RtmpDZq1x8’ ‘~/tmp/scratch/RtmpEYz1fl’   ‘~/tmp/scratch/RtmpEkdoSM’ ‘~/tmp/scratch/RtmpFFoZju’   ‘~/tmp/scratch/RtmpGmTMWz’ ‘~/tmp/scratch/RtmpGn4g8U’   ‘~/tmp/scratch/RtmpHPkz5N’ ‘~/tmp/scratch/RtmpHcZ9DH’   ‘~/tmp/scratch/RtmpHdasEh’ ‘~/tmp/scratch/RtmpIkxdf7’   ‘~/tmp/scratch/RtmpJHc5fA’ ‘~/tmp/scratch/RtmpJf2w1D’   ‘~/tmp/scratch/RtmpKH8Ucu’ ‘~/tmp/scratch/RtmpLY01bJ’   ‘~/tmp/scratch/RtmpLbnf8e’ ‘~/tmp/scratch/RtmpMcRGg7’   ‘~/tmp/scratch/RtmpMnjL9V’ ‘~/tmp/scratch/RtmpMzwv7u’   ‘~/tmp/scratch/RtmpNE4qVI’ ‘~/tmp/scratch/RtmpNPBCZR’   ‘~/tmp/scratch/RtmpO7RTAl’ ‘~/tmp/scratch/RtmpP2TgX4’   ‘~/tmp/scratch/RtmpPQWq1l’ ‘~/tmp/scratch/RtmpPavSRy’   ‘~/tmp/scratch/RtmpPfR2c8’ ‘~/tmp/scratch/RtmpQ1ppWL’   ‘~/tmp/scratch/RtmpQUnAsQ’ ‘~/tmp/scratch/RtmpRM7HTe’   ‘~/tmp/scratch/RtmpRtxmeA’ ‘~/tmp/scratch/RtmpSY5FR9’   ‘~/tmp/scratch/RtmpSoOz9E’ ‘~/tmp/scratch/RtmpSvZSvG’   ‘~/tmp/scratch/RtmpSxjItS’ ‘~/tmp/scratch/RtmpT6FvtH’   ‘~/tmp/scratch/RtmpTt0UJC’ ‘~/tmp/scratch/RtmpTzovjq’   ‘~/tmp/scratch/RtmpUd5Bd9’ ‘~/tmp/scratch/RtmpV6qmiW’   ‘~/tmp/scratch/RtmpVglMhD’ ‘~/tmp/scratch/RtmpWmDBSz’   ‘~/tmp/scratch/RtmpXzJCrL’ ‘~/tmp/scratch/RtmpYXQiE7’   ‘~/tmp/scratch/RtmpYdcY8B’ ‘~/tmp/scratch/RtmpYhdDP5’   ‘~/tmp/scratch/RtmpZSYQvb’ ‘~/tmp/scratch/RtmpZx2QFO’   ‘~/tmp/scratch/RtmpbmlWa8’ ‘~/tmp/scratch/RtmpchI3ZK’   ‘~/tmp/scratch/RtmpdD4UZy’ ‘~/tmp/scratch/RtmpdLob7i’   ‘~/tmp/scratch/RtmpdOlRuZ’ ‘~/tmp/scratch/RtmpddzNSt’   ‘~/tmp/scratch/RtmpdsaK2t’ ‘~/tmp/scratch/Rtmpe1Qd30’   ‘~/tmp/scratch/RtmpeRGSLW’ ‘~/tmp/scratch/RtmpewNEgH’   ‘~/tmp/scratch/Rtmpf010FH’ ‘~/tmp/scratch/Rtmpf579UG’   ‘~/tmp/scratch/RtmpfITRJk’ ‘~/tmp/scratch/RtmpfZx74C’   ‘~/tmp/scratch/RtmpffAz3r’ ‘~/tmp/scratch/Rtmpfqye8a’   ‘~/tmp/scratch/RtmpfwA1hP’ ‘~/tmp/scratch/Rtmph6NFAY’   ‘~/tmp/scratch/RtmphSNLta’ ‘~/tmp/scratch/RtmphuDQf4’   ‘~/tmp/scratch/Rtmpi5uDIl’ ‘~/tmp/scratch/RtmpiBKU7D’   ‘~/tmp/scratch/Rtmpiar79I’ ‘~/tmp/scratch/Rtmpijpd6W’   ‘~/tmp/scratch/Rtmpin3VCl’ ‘~/tmp/scratch/Rtmpjow7Yp’   ‘~/tmp/scratch/RtmpkJ24Xg’ ‘~/tmp/scratch/Rtmpm3seCN’   ‘~/tmp/scratch/RtmpmAqODY’ ‘~/tmp/scratch/RtmpmPCygV’   ‘~/tmp/scratch/RtmpmzhBJG’ ‘~/tmp/scratch/Rtmpn7QcSH’   ‘~/tmp/scratch/RtmpnAOeRn’ ‘~/tmp/scratch/RtmpnC33Or’   ‘~/tmp/scratch/RtmpoVDbvZ’ ‘~/tmp/scratch/RtmpovpJxZ’   ‘~/tmp/scratch/Rtmpp1QhGd’ ‘~/tmp/scratch/Rtmpp574E0’   ‘~/tmp/scratch/Rtmppc6B7J’ ‘~/tmp/scratch/Rtmppo1Y1T’   ‘~/tmp/scratch/RtmpqC1PWR’ ‘~/tmp/scratch/RtmpqSAlZg’   ‘~/tmp/scratch/RtmpqV6bSo’ ‘~/tmp/scratch/RtmpqaV3S8’   ‘~/tmp/scratch/RtmpqsdGUx’ ‘~/tmp/scratch/Rtmpr5C09T’   ‘~/tmp/scratch/Rtmpr7zecK’ ‘~/tmp/scratch/RtmprFBElt’   ‘~/tmp/scratch/RtmprODuBw’ ‘~/tmp/scratch/Rtmprffc8u’   ‘~/tmp/scratch/RtmpsNkbJH’ ‘~/tmp/scratch/RtmpsT6cZm’   ‘~/tmp/scratch/RtmpsewTt5’ ‘~/tmp/scratch/Rtmpt1crkP’   ‘~/tmp/scratch/RtmptrUtXT’ ‘~/tmp/scratch/RtmpttACrM’   ‘~/tmp/scratch/Rtmpu9z4Uc’ ‘~/tmp/scratch/RtmpuROoXB’   ‘~/tmp/scratch/RtmpuqVDvp’ ‘~/tmp/scratch/RtmpuygJfe’   ‘~/tmp/scratch/Rtmpv4pzMR’ ‘~/tmp/scratch/RtmpwVGOfx’   ‘~/tmp/scratch/Rtmpx1IW4q’ ‘~/tmp/scratch/RtmpxuCAj7’   ‘~/tmp/scratch/RtmpyG5vwB’ ‘~/tmp/scratch/RtmpyIloPk’   ‘~/tmp/scratch/RtmpyvhFji’ ‘~/tmp/scratch/RtmpzeqBAd’   ‘~/tmp/scratch/Rtmpzw8bom’ ‘~/tmp/scratch/xvfb-run.1snjvP’   ‘~/tmp/scratch/xvfb-run.4feByo’ ‘~/tmp/scratch/xvfb-run.5FplUP’   ‘~/tmp/scratch/xvfb-run.5qGznZ’ ‘~/tmp/scratch/xvfb-run.5y9G9t’   ‘~/tmp/scratch/xvfb-run.64Voyc’ ‘~/tmp/scratch/xvfb-run.7xCL9V’   ‘~/tmp/scratch/xvfb-run.9ooLNJ’ ‘~/tmp/scratch/xvfb-run.AkMWwe’   ‘~/tmp/scratch/xvfb-run.D2QWuL’ ‘~/tmp/scratch/xvfb-run.HKIcro’   ‘~/tmp/scratch/xvfb-run.ISmhHT’ ‘~/tmp/scratch/xvfb-run.IzL67r’   ‘~/tmp/scratch/xvfb-run.KAAay9’ ‘~/tmp/scratch/xvfb-run.NPkOCr’   ‘~/tmp/scratch/xvfb-run.NSkBJc’ ‘~/tmp/scratch/xvfb-run.ObuuJw’   ‘~/tmp/scratch/xvfb-run.Q82I37’ ‘~/tmp/scratch/xvfb-run.S7OrS5’   ‘~/tmp/scratch/xvfb-run.S9W96z’ ‘~/tmp/scratch/xvfb-run.TOA1FZ’   ‘~/tmp/scratch/xvfb-run.TV51HU’ ‘~/tmp/scratch/xvfb-run.TtH2YU’   ‘~/tmp/scratch/xvfb-run.V5NwZU’ ‘~/tmp/scratch/xvfb-run.VquBcw’   ‘~/tmp/scratch/xvfb-run.YRn4nx’ ‘~/tmp/scratch/xvfb-run.dNTKHH’   ‘~/tmp/scratch/xvfb-run.dj5ckU’ ‘~/tmp/scratch/xvfb-run.dnt6eT’   ‘~/tmp/scratch/xvfb-run.e3pUXd’ ‘~/tmp/scratch/xvfb-run.ePcJaX’   ‘~/tmp/scratch/xvfb-run.g62fbv’ ‘~/tmp/scratch/xvfb-run.gR5Oqv’   ‘~/tmp/scratch/xvfb-run.j1dsGz’ ‘~/tmp/scratch/xvfb-run.jLNZ6l’   ‘~/tmp/scratch/xvfb-run.k87GmI’ ‘~/tmp/scratch/xvfb-run.kg86gE’   ‘~/tmp/scratch/xvfb-run.krE5nr’ ‘~/tmp/scratch/xvfb-run.mE0K7Y’   ‘~/tmp/scratch/xvfb-run.mGk2L1’ ‘~/tmp/scratch/xvfb-run.nZqCjM’   ‘~/tmp/scratch/xvfb-run.oYmqnL’ ‘~/tmp/scratch/xvfb-run.p5pvRT’   ‘~/tmp/scratch/xvfb-run.pJffDP’ ‘~/tmp/scratch/xvfb-run.pQybgS’   ‘~/tmp/scratch/xvfb-run.pT0mI9’ ‘~/tmp/scratch/xvfb-run.qJhKtP’   ‘~/tmp/scratch/xvfb-run.rcrzYQ’ ‘~/tmp/scratch/xvfb-run.sOB9Au’   ‘~/tmp/scratch/xvfb-run.ueFCaC’ ‘~/tmp/scratch/xvfb-run.wDL9pu’   ‘~/tmp/scratch/xvfb-run.wzQuN7’ ‘~/tmp/scratch/xvfb-run.xxLpX4’   ‘~/tmp/scratch/xvfb-run.yIReID’ ‘~/tmp/scratch/xvfb-run.ykFvAl’   ‘~/tmp/scratch/xvfb-run.z65qeW’   ‘/dev/shm/0a52b2e5-e8bd-4b89-bf4c-b6e7cc38503e’   ‘/dev/shm/0a52b2e5-e8bd-4b89-bf4c-b6e7cc38503e_counter’   ‘/dev/shm/0b6b642c-94ed-4fc1-8654-02bb3fa7764f’   ‘/dev/shm/0b6b642c-94ed-4fc1-8654-02bb3fa7764f_counter’   ‘/dev/shm/32783895-0625-4fb7-8075-fff7e700a1db’   ‘/dev/shm/32783895-0625-4fb7-8075-fff7e700a1db_counter’   ‘/dev/shm/34c36b99-cdc5-481b-96e4-83097209d925’   ‘/dev/shm/34c36b99-cdc5-481b-96e4-83097209d925_counter’   ‘/dev/shm/43fbeb47-4790-4d9a-a52a-1abe20ae2dc1’   ‘/dev/shm/43fbeb47-4790-4d9a-a52a-1abe20ae2dc1_counter’   ‘/dev/shm/58066437-1a79-4ec7-ab36-815474239534’   ‘/dev/shm/58066437-1a79-4ec7-ab36-815474239534_counter’   ‘/dev/shm/5a79aa3a-f763-48c6-98ac-ae82bed22c5f’   ‘/dev/shm/5a79aa3a-f763-48c6-98ac-ae82bed22c5f_counter’   ‘/dev/shm/a36c0181-20fa-4a04-be0e-41d9570d8b37’   ‘/dev/shm/a36c0181-20fa-4a04-be0e-41d9570d8b37_counter’   ‘/dev/shm/ab057087-f623-4942-80c9-c6867b4f4dfa’   ‘/dev/shm/ab057087-f623-4942-80c9-c6867b4f4dfa_counter’   ‘/dev/shm/ae8721b7-ff49-4bb9-bfe0-92360f03a516’   ‘/dev/shm/ae8721b7-ff49-4bb9-bfe0-92360f03a516_counter’   ‘/dev/shm/b272909e-744e-46ec-86c2-e3a99c1b345d’   ‘/dev/shm/b272909e-744e-46ec-86c2-e3a99c1b345d_counter’   ‘/dev/shm/e9a4e4f8-62bd-44a6-a72e-2d4b28268757’   ‘/dev/shm/e9a4e4f8-62bd-44a6-a72e-2d4b28268757_counter’   ‘/dev/shm/sem.0a52b2e5-e8bd-4b89-bf4c-b6e7cc38503e_bigmemory_counter_mutex’   ‘/dev/shm/sem.0b6b642c-94ed-4fc1-8654-02bb3fa7764f_bigmemory_counter_mutex’   ‘/dev/shm/sem.32783895-0625-4fb7-8075-fff7e700a1db_bigmemory_counter_mutex’   ‘/dev/shm/sem.34c36b99-cdc5-481b-96e4-83097209d925_bigmemory_counter_mutex’   ‘/dev/shm/sem.43fbeb47-4790-4d9a-a52a-1abe20ae2dc1_bigmemory_counter_mutex’   ‘/dev/shm/sem.58066437-1a79-4ec7-ab36-815474239534_bigmemory_counter_mutex’   ‘/dev/shm/sem.5a79aa3a-f763-48c6-98ac-ae82bed22c5f_bigmemory_counter_mutex’   ‘/dev/shm/sem.a36c0181-20fa-4a04-be0e-41d9570d8b37_bigmemory_counter_mutex’   ‘/dev/shm/sem.ab057087-f623-4942-80c9-c6867b4f4dfa_bigmemory_counter_mutex’   ‘/dev/shm/sem.ae8721b7-ff49-4bb9-bfe0-92360f03a516_bigmemory_counter_mutex’   ‘/dev/shm/sem.b272909e-744e-46ec-86c2-e3a99c1b345d_bigmemory_counter_mutex’   ‘/dev/shm/sem.e9a4e4f8-62bd-44a6-a72e-2d4b28268757_bigmemory_counter_mutex’
• DONE

Status: 1 NOTE