• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 12:15:32 UTC
• checking for file ‘MolgenisArmadillo/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘MolgenisArmadillo’ version ‘3.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘MolgenisArmadillo’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [6s/8s] OK   Running ‘testthat.R’ [6s/8s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [5s/8s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0BhFEe’ ‘~/tmp/scratch/Rtmp0FCPCO’   ‘~/tmp/scratch/Rtmp0X83YR’ ‘~/tmp/scratch/Rtmp1AvZvL’   ‘~/tmp/scratch/Rtmp1jvbhP’ ‘~/tmp/scratch/Rtmp20NYYD’   ‘~/tmp/scratch/Rtmp2XBrbu’ ‘~/tmp/scratch/Rtmp2ZMiff’   ‘~/tmp/scratch/Rtmp2vmYCf’ ‘~/tmp/scratch/Rtmp32cDln’   ‘~/tmp/scratch/Rtmp3AiuEX’ ‘~/tmp/scratch/Rtmp3QDJHT’   ‘~/tmp/scratch/Rtmp3mVeFV’ ‘~/tmp/scratch/Rtmp47RwNI’   ‘~/tmp/scratch/Rtmp4fRwzf’ ‘~/tmp/scratch/Rtmp510ODk’   ‘~/tmp/scratch/Rtmp5NL1Ve’ ‘~/tmp/scratch/Rtmp5c8PB7’   ‘~/tmp/scratch/Rtmp5ud3pP’ ‘~/tmp/scratch/Rtmp6KURjY’   ‘~/tmp/scratch/Rtmp6PjIaB’ ‘~/tmp/scratch/Rtmp6rhqPn’   ‘~/tmp/scratch/Rtmp6uC6WH’ ‘~/tmp/scratch/Rtmp73EXvV’   ‘~/tmp/scratch/Rtmp7LoaVg’ ‘~/tmp/scratch/Rtmp7OCDvh’   ‘~/tmp/scratch/Rtmp8HJRSV’ ‘~/tmp/scratch/Rtmp8QdDvC’   ‘~/tmp/scratch/Rtmp8mo78o’ ‘~/tmp/scratch/Rtmp92VGCO’   ‘~/tmp/scratch/Rtmp9Ns8Yn’ ‘~/tmp/scratch/Rtmp9vW2xZ’   ‘~/tmp/scratch/RtmpAFvxrm’ ‘~/tmp/scratch/RtmpAn9smy’   ‘~/tmp/scratch/RtmpAzoCtK’ ‘~/tmp/scratch/RtmpBCb6BB’   ‘~/tmp/scratch/RtmpBl7SRI’ ‘~/tmp/scratch/RtmpBwNt8s’   ‘~/tmp/scratch/RtmpCigwAD’ ‘~/tmp/scratch/RtmpDDp9fg’   ‘~/tmp/scratch/RtmpDH98Rw’ ‘~/tmp/scratch/RtmpEc3XNg’   ‘~/tmp/scratch/RtmpEsMY33’ ‘~/tmp/scratch/RtmpFKVECy’   ‘~/tmp/scratch/RtmpFSMj7i’ ‘~/tmp/scratch/RtmpFaIiC1’   ‘~/tmp/scratch/RtmpGG3VF1’ ‘~/tmp/scratch/RtmpGXR7mf’   ‘~/tmp/scratch/RtmpH0XW7r’ ‘~/tmp/scratch/RtmpHd47B9’   ‘~/tmp/scratch/RtmpHuKSkx’ ‘~/tmp/scratch/RtmpHx6w8Z’   ‘~/tmp/scratch/RtmpHyuFcS’ ‘~/tmp/scratch/RtmpIEkrSx’   ‘~/tmp/scratch/RtmpIkFqVT’ ‘~/tmp/scratch/RtmpJIHBu6’   ‘~/tmp/scratch/RtmpJRvsK9’ ‘~/tmp/scratch/RtmpJXuEjO’   ‘~/tmp/scratch/RtmpJasF9Y’ ‘~/tmp/scratch/RtmpJoiFw3’   ‘~/tmp/scratch/RtmpK7GkFc’ ‘~/tmp/scratch/RtmpLg3H1c’   ‘~/tmp/scratch/RtmpLtZZPd’ ‘~/tmp/scratch/RtmpMJ3uXw’   ‘~/tmp/scratch/RtmpMXC2v4’ ‘~/tmp/scratch/RtmpMpwmlh’   ‘~/tmp/scratch/RtmpOCcLOA’ ‘~/tmp/scratch/RtmpOJsH7Q’   ‘~/tmp/scratch/RtmpOuVSLn’ ‘~/tmp/scratch/RtmpPPJc0e’   ‘~/tmp/scratch/RtmpQO0raz’ ‘~/tmp/scratch/RtmpRbbPBZ’   ‘~/tmp/scratch/RtmpS1Q6tR’ ‘~/tmp/scratch/RtmpSMHBNW’   ‘~/tmp/scratch/RtmpSqrAzb’ ‘~/tmp/scratch/RtmpTTIcje’   ‘~/tmp/scratch/RtmpWF7eWA’ ‘~/tmp/scratch/RtmpWlHVZI’   ‘~/tmp/scratch/RtmpX3PkHw’ ‘~/tmp/scratch/RtmpXGuUJC’   ‘~/tmp/scratch/RtmpXbV4Pw’ ‘~/tmp/scratch/RtmpXxQRQG’   ‘~/tmp/scratch/RtmpYxak7c’ ‘~/tmp/scratch/RtmpZKQdrb’   ‘~/tmp/scratch/RtmpZLZEbA’ ‘~/tmp/scratch/RtmpZQo8rP’   ‘~/tmp/scratch/RtmpZu49Fg’ ‘~/tmp/scratch/RtmpaGpK3y’   ‘~/tmp/scratch/RtmpabUBBZ’ ‘~/tmp/scratch/Rtmpax9Lsu’   ‘~/tmp/scratch/RtmpbBSh1S’ ‘~/tmp/scratch/Rtmpby2D6Z’   ‘~/tmp/scratch/RtmpcQMF3d’ ‘~/tmp/scratch/RtmpcrGoEH’   ‘~/tmp/scratch/RtmpdSdluj’ ‘~/tmp/scratch/RtmpdZHu6h’   ‘~/tmp/scratch/Rtmpdr49GR’ ‘~/tmp/scratch/Rtmpds9OVY’   ‘~/tmp/scratch/RtmpeDPT2K’ ‘~/tmp/scratch/RtmpeTUpti’   ‘~/tmp/scratch/RtmpecauLS’ ‘~/tmp/scratch/Rtmpegf3zf’   ‘~/tmp/scratch/Rtmpf4Qa7y’ ‘~/tmp/scratch/RtmpfuaMOT’   ‘~/tmp/scratch/Rtmpgxgj1R’ ‘~/tmp/scratch/Rtmph56qfD’   ‘~/tmp/scratch/RtmphDpXr6’ ‘~/tmp/scratch/RtmphdSWJU’   ‘~/tmp/scratch/RtmpiG5SYW’ ‘~/tmp/scratch/Rtmpihc8hd’   ‘~/tmp/scratch/Rtmpj99hvN’ ‘~/tmp/scratch/RtmpjhJvOe’   ‘~/tmp/scratch/Rtmpk3DZPU’ ‘~/tmp/scratch/RtmpkgDfWF’   ‘~/tmp/scratch/RtmplqegDY’ ‘~/tmp/scratch/Rtmpn7oU2F’   ‘~/tmp/scratch/RtmpnyxI8L’ ‘~/tmp/scratch/Rtmpo1Sa9g’   ‘~/tmp/scratch/RtmpogzCtb’ ‘~/tmp/scratch/RtmppYfi3X’   ‘~/tmp/scratch/RtmpsDRLSt’ ‘~/tmp/scratch/Rtmpt3NIAa’   ‘~/tmp/scratch/Rtmpu6Sj7M’ ‘~/tmp/scratch/RtmpuIRYL1’   ‘~/tmp/scratch/RtmpucYeHA’ ‘~/tmp/scratch/RtmpuftePc’   ‘~/tmp/scratch/RtmpvMvW7N’ ‘~/tmp/scratch/Rtmpy5n0jJ’   ‘~/tmp/scratch/RtmpyUxZ3V’ ‘~/tmp/scratch/RtmpyhYVjd’   ‘~/tmp/scratch/RtmpzAxd3Z’ ‘~/tmp/scratch/RtmpznxSZi’   ‘~/tmp/scratch/xvfb-run.30mE6R’ ‘~/tmp/scratch/xvfb-run.4Btntw’   ‘~/tmp/scratch/xvfb-run.6fMx6O’ ‘~/tmp/scratch/xvfb-run.7CyK0j’   ‘~/tmp/scratch/xvfb-run.8re5UW’ ‘~/tmp/scratch/xvfb-run.9AfZXx’   ‘~/tmp/scratch/xvfb-run.9KgVLy’ ‘~/tmp/scratch/xvfb-run.CbYa6K’   ‘~/tmp/scratch/xvfb-run.DwbsBE’ ‘~/tmp/scratch/xvfb-run.EgcGHB’   ‘~/tmp/scratch/xvfb-run.HqB037’ ‘~/tmp/scratch/xvfb-run.IJrd6Z’   ‘~/tmp/scratch/xvfb-run.KIZmVj’ ‘~/tmp/scratch/xvfb-run.KSM3bn’   ‘~/tmp/scratch/xvfb-run.KrTWnJ’ ‘~/tmp/scratch/xvfb-run.NB7VAG’   ‘~/tmp/scratch/xvfb-run.Ner9o4’ ‘~/tmp/scratch/xvfb-run.NoZVKW’   ‘~/tmp/scratch/xvfb-run.OioJKI’ ‘~/tmp/scratch/xvfb-run.PnMORR’   ‘~/tmp/scratch/xvfb-run.Puoc6v’ ‘~/tmp/scratch/xvfb-run.Q7MSC3’   ‘~/tmp/scratch/xvfb-run.R36YQs’ ‘~/tmp/scratch/xvfb-run.RXVBGW’   ‘~/tmp/scratch/xvfb-run.RahYdr’ ‘~/tmp/scratch/xvfb-run.SfmVhX’   ‘~/tmp/scratch/xvfb-run.VdEoVo’ ‘~/tmp/scratch/xvfb-run.WMDcF7’   ‘~/tmp/scratch/xvfb-run.Ym17Qx’ ‘~/tmp/scratch/xvfb-run.aGEXEb’   ‘~/tmp/scratch/xvfb-run.aTuAcg’ ‘~/tmp/scratch/xvfb-run.aZP2oJ’   ‘~/tmp/scratch/xvfb-run.au6l71’ ‘~/tmp/scratch/xvfb-run.cIatmj’   ‘~/tmp/scratch/xvfb-run.dgKiEC’ ‘~/tmp/scratch/xvfb-run.e4WCN2’   ‘~/tmp/scratch/xvfb-run.i2vQWT’ ‘~/tmp/scratch/xvfb-run.ic4s6V’   ‘~/tmp/scratch/xvfb-run.jLOLcm’ ‘~/tmp/scratch/xvfb-run.jzJXzy’   ‘~/tmp/scratch/xvfb-run.k3wmsn’ ‘~/tmp/scratch/xvfb-run.k5MLzG’   ‘~/tmp/scratch/xvfb-run.k6bwFy’ ‘~/tmp/scratch/xvfb-run.kcEWgi’   ‘~/tmp/scratch/xvfb-run.orj53o’ ‘~/tmp/scratch/xvfb-run.sfnw7J’   ‘/dev/shm/sm_segment.gimli1.1001.7be50000.0’   ‘~/.cache/pocl/uncached/tempfile_nWPJmP’
• DONE

Status: 1 NOTE