- using R Under development (unstable) (2025-10-19 r88945)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.2.0-4) 15.2.0
GNU Fortran (Debian 15.2.0-4) 15.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘MetAlyzer/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘MetAlyzer’ version ‘1.1.0’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘MetAlyzer’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [8s/10s] OK
- checking whether the package can be loaded with stated dependencies ... [7s/8s] OK
- checking whether the package can be unloaded cleanly ... [7s/8s] OK
- checking whether the namespace can be loaded with stated dependencies ... [8s/11s] OK
- checking whether the namespace can be unloaded cleanly ... [8s/11s] OK
- checking loading without being on the library search path ... [8s/10s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [38s/51s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [62s/76s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plotly_scatter 6.097 0.023 7.339
calculate_cv 5.513 0.606 8.321
calculate_anova 4.491 0.053 5.880
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [153s/196s] OK
- checking PDF version of manual ... [5s/7s] OK
- checking HTML version of manual ... [1s/1s] NOTE
Found the following HTML validation problems:
aggregate_data.html:65:1 (aggregate_data.Rd:18): Warning: missing </ul> before </div>
calc_anova.html:52:1 (calc_anova.Rd:12): Warning: missing </ul> before </div>
data_imputation.html:58:1 (data_imputation.Rd:15): Warning: missing </ul> before </div>
get_data_range.html:47:1 (get_data_range.Rd:10): Warning: missing </ul> before </div>
open_file.html:47:1 (open_file.Rd:10): Warning: missing </ul> before </div>
read_named_region.html:50:1 (read_named_region.Rd:12): Warning: missing </ul> before </div>
read_quant_status.html:74:1 (read_quant_status.Rd:27): Warning: missing </ul> before </div>
set_threshold.html:50:1 (set_threshold.Rd:12): Warning: missing </ul> before </div>
slice_conc_values.html:55:1 (slice_conc_values.Rd:14): Warning: missing </ul> before </div>
slice_meta_data.html:50:1 (slice_meta_data.Rd:12): Warning: missing </ul> before </div>
slice_metabolites.html:51:1 (slice_metabolites.Rd:12): Warning: missing </ul> before </div>
transform.html:51:1 (transform.Rd:12): Warning: missing </ul> before </div>
unify_hex.html:47:1 (unify_hex.Rd:10): Warning: missing </ul> before </div>
zero_imputation.html:55:1 (zero_imputation.Rd:14): Warning: missing </ul> before </div>
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE