* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘MatTransMix’ ...
** this is package ‘MatTransMix’ version ‘0.1.18’
** package ‘MatTransMix’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
make[1]: Entering directory '/tmp/Rtmp5kyU1X/R.INSTALL24618c12279e94/MatTransMix/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c crosen1.c -o crosen1.o
crosen1.c: In function ‘simplex1’:
crosen1.c:17:7: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=]
17 | int k;
| ^
In file included from crosen1.c:2:
array.h:19:11: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
19 | (a) = malloc((n) * sizeof *(a)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
array.h:109:29: note: in expansion of macro ‘MAKE_1ARRAY’
109 | #define MAKE_VECTOR(a,n) MAKE_1ARRAY(a,n)
| ^~~~~~~~~~~
crosen1.c:44:3: note: in expansion of macro ‘MAKE_VECTOR’
44 | MAKE_VECTOR(vr, n);
| ^~~~~~~~~~~
In file included from array.h:7:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
array.h:19:11: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
19 | (a) = malloc((n) * sizeof *(a)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
array.h:109:29: note: in expansion of macro ‘MAKE_1ARRAY’
109 | #define MAKE_VECTOR(a,n) MAKE_1ARRAY(a,n)
| ^~~~~~~~~~~
crosen1.c:45:3: note: in expansion of macro ‘MAKE_VECTOR’
45 | MAKE_VECTOR(ve, n);
| ^~~~~~~~~~~
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
array.h:19:11: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
19 | (a) = malloc((n) * sizeof *(a)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
array.h:109:29: note: in expansion of macro ‘MAKE_1ARRAY’
109 | #define MAKE_VECTOR(a,n) MAKE_1ARRAY(a,n)
| ^~~~~~~~~~~
crosen1.c:46:3: note: in expansion of macro ‘MAKE_VECTOR’
46 | MAKE_VECTOR(vc, n);
| ^~~~~~~~~~~
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
array.h:19:11: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
19 | (a) = malloc((n) * sizeof *(a)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
array.h:109:29: note: in expansion of macro ‘MAKE_1ARRAY’
109 | #define MAKE_VECTOR(a,n) MAKE_1ARRAY(a,n)
| ^~~~~~~~~~~
crosen1.c:47:3: note: in expansion of macro ‘MAKE_VECTOR’
47 | MAKE_VECTOR(vm, n);
| ^~~~~~~~~~~
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c crosen2.c -o crosen2.o
crosen2.c: In function ‘simplex2’:
crosen2.c:20:7: warning: variable ‘k’ set but not used [-Wunused-but-set-variable=]
20 | int k;
| ^
In file included from crosen2.c:2:
array.h:19:11: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
19 | (a) = malloc((n) * sizeof *(a)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
array.h:109:29: note: in expansion of macro ‘MAKE_1ARRAY’
109 | #define MAKE_VECTOR(a,n) MAKE_1ARRAY(a,n)
| ^~~~~~~~~~~
crosen2.c:41:3: note: in expansion of macro ‘MAKE_VECTOR’
41 | MAKE_VECTOR(vr, n);
| ^~~~~~~~~~~
In file included from array.h:7:
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
array.h:19:11: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
19 | (a) = malloc((n) * sizeof *(a)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
array.h:109:29: note: in expansion of macro ‘MAKE_1ARRAY’
109 | #define MAKE_VECTOR(a,n) MAKE_1ARRAY(a,n)
| ^~~~~~~~~~~
crosen2.c:42:3: note: in expansion of macro ‘MAKE_VECTOR’
42 | MAKE_VECTOR(ve, n);
| ^~~~~~~~~~~
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
array.h:19:11: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
19 | (a) = malloc((n) * sizeof *(a)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
array.h:109:29: note: in expansion of macro ‘MAKE_1ARRAY’
109 | #define MAKE_VECTOR(a,n) MAKE_1ARRAY(a,n)
| ^~~~~~~~~~~
crosen2.c:43:3: note: in expansion of macro ‘MAKE_VECTOR’
43 | MAKE_VECTOR(vc, n);
| ^~~~~~~~~~~
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
array.h:19:11: warning: argument 1 value ‘18446744073709551608’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
19 | (a) = malloc((n) * sizeof *(a)); \
| ^~~~~~~~~~~~~~~~~~~~~~~~~
array.h:109:29: note: in expansion of macro ‘MAKE_1ARRAY’
109 | #define MAKE_VECTOR(a,n) MAKE_1ARRAY(a,n)
| ^~~~~~~~~~~
crosen2.c:44:3: note: in expansion of macro ‘MAKE_VECTOR’
44 | MAKE_VECTOR(vm, n);
| ^~~~~~~~~~~
/usr/include/stdlib.h:672:14: note: in a call to allocation function ‘malloc’ declared here
672 | extern void *malloc (size_t __size) __THROW __attribute_malloc__
| ^~~~~~
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libCEigen.c -o libCEigen.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libEVD.c -o libEVD.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libEVD_LAPACK.c -o libEVD_LAPACK.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libFull.c -o libFull.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libMatrix.c -o libMatrix.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libPsi.c -o libPsi.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libRandC.c -o libRandC.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libSigma_1.c -o libSigma_1.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libSigma_2.c -o libSigma_2.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c runFull.c -o runFull.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c svd.c -o svd.o
gcc-16 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o MatTransMix.so crosen1.o crosen2.o libCEigen.o libEVD.o libEVD_LAPACK.o libFull.o libMatrix.o libPsi.o libRandC.o libSigma_1.o libSigma_2.o registerDynamicSymbol.o runFull.o svd.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp5kyU1X/R.INSTALL24618c12279e94/MatTransMix/src'
make[1]: Entering directory '/tmp/Rtmp5kyU1X/R.INSTALL24618c12279e94/MatTransMix/src'
make[1]: Leaving directory '/tmp/Rtmp5kyU1X/R.INSTALL24618c12279e94/MatTransMix/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-MatTransMix/00new/MatTransMix/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MatTransMix)