* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘MMVBVS’ ...
** this is package ‘MMVBVS’ version ‘0.8.0’
** package ‘MMVBVS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’
make[1]: Entering directory '/tmp/Rtmpl9fEyA/R.INSTALL3255c76369da78/MMVBVS/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mmvbvs.cpp -o mmvbvs.o
mmvbvs.cpp: In function ‘arma::mat em_with_zero_mean_c(arma::mat, int)’:
mmvbvs.cpp:107:40: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
107 | if (0 < ind.size() && ind.size() < p){
| ~~~~~~~~~~~^~~
mmvbvs.cpp: In function ‘Rcpp::List update_h_c(double, int, arma::vec, arma::vec, arma::mat, arma::vec, int)’:
mmvbvs.cpp:390:18: warning: unnecessary parentheses in declaration of ‘rr’ [-Wparentheses]
390 | NumericVector(rr) = runif(1, -0.05, 0.05);
| ^~~~
mmvbvs.cpp:390:18: note: remove parentheses
390 | NumericVector(rr) = runif(1, -0.05, 0.05);
| ^~~~
| - -
mmvbvs.cpp:399:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
399 | for (int j=0; j < ind.size(); ++j){
| ~~^~~~~~~~~~~~
mmvbvs.cpp: In function ‘Rcpp::List mmvbvs(arma::vec, arma::mat, Rcpp::List, arma::mat, arma::rowvec, int, int, int, int, int, double, bool)’:
mmvbvs.cpp:505:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
505 | if(!arma::is_finite(outsb1(i))){
| ~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
from mmvbvs.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
| ^~~~~~~~~
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o MMVBVS.so RcppExports.o mmvbvs.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpl9fEyA/R.INSTALL3255c76369da78/MMVBVS/src'
make[1]: Entering directory '/tmp/Rtmpl9fEyA/R.INSTALL3255c76369da78/MMVBVS/src'
make[1]: Leaving directory '/tmp/Rtmpl9fEyA/R.INSTALL3255c76369da78/MMVBVS/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-MMVBVS/00new/MMVBVS/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MMVBVS)