• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 12:07:23 UTC
• checking for file ‘MCMCglmm/DESCRIPTION’ ... OK
• this is package ‘MCMCglmm’ version ‘2.36’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Jarrod Hadfield <j.hadfield@ed.ac.uk>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: person(given = "Jarrod",                     family = "Hadfield",                     role = c("aut", "cre"),                     email = "j.hadfield@ed.ac.uk") as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘MCMCglmm’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s/22s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [3s/4s] OK
• checking PDF version of manual ... [6s/9s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp01oA3U’ ‘~/tmp/scratch/Rtmp0uiOG4’   ‘~/tmp/scratch/Rtmp1Wxm5c’ ‘~/tmp/scratch/Rtmp2HYwL1’   ‘~/tmp/scratch/Rtmp2ld7OC’ ‘~/tmp/scratch/Rtmp31k7Rr’   ‘~/tmp/scratch/Rtmp3knIsf’ ‘~/tmp/scratch/Rtmp4DkAXy’   ‘~/tmp/scratch/Rtmp4PNAEq’ ‘~/tmp/scratch/Rtmp52Ijtb’   ‘~/tmp/scratch/Rtmp5TncLN’ ‘~/tmp/scratch/Rtmp5bpL55’   ‘~/tmp/scratch/Rtmp68vk3E’ ‘~/tmp/scratch/Rtmp6BwuLH’   ‘~/tmp/scratch/Rtmp6cQLN3’ ‘~/tmp/scratch/Rtmp7wToFM’   ‘~/tmp/scratch/Rtmp85x4vu’ ‘~/tmp/scratch/Rtmp8K2Vll’   ‘~/tmp/scratch/Rtmp8nq5cW’ ‘~/tmp/scratch/Rtmp8q3e8k’   ‘~/tmp/scratch/Rtmp8tEjxm’ ‘~/tmp/scratch/Rtmp9PekBd’   ‘~/tmp/scratch/Rtmp9SABaO’ ‘~/tmp/scratch/RtmpA4G32Y’   ‘~/tmp/scratch/RtmpA8wec4’ ‘~/tmp/scratch/RtmpALLvJ2’   ‘~/tmp/scratch/RtmpAR1Yfl’ ‘~/tmp/scratch/RtmpAWStIC’   ‘~/tmp/scratch/RtmpAWkuVY’ ‘~/tmp/scratch/RtmpAYXiBN’   ‘~/tmp/scratch/RtmpAoUR7H’ ‘~/tmp/scratch/RtmpBaKOer’   ‘~/tmp/scratch/RtmpBgowyD’ ‘~/tmp/scratch/RtmpCJBBUF’   ‘~/tmp/scratch/RtmpD6RT3O’ ‘~/tmp/scratch/RtmpDaYQms’   ‘~/tmp/scratch/RtmpFmXomm’ ‘~/tmp/scratch/RtmpGRKhl7’   ‘~/tmp/scratch/RtmpGi4H3w’ ‘~/tmp/scratch/RtmpHSaaIS’   ‘~/tmp/scratch/RtmpHsgYiN’ ‘~/tmp/scratch/RtmpIn59gv’   ‘~/tmp/scratch/RtmpJC0p0Q’ ‘~/tmp/scratch/RtmpJKJyHU’   ‘~/tmp/scratch/RtmpJztyFV’ ‘~/tmp/scratch/RtmpKIE6Qi’   ‘~/tmp/scratch/RtmpKmr8Wa’ ‘~/tmp/scratch/RtmpM7FHeT’   ‘~/tmp/scratch/RtmpMCkov7’ ‘~/tmp/scratch/RtmpMM5XYm’   ‘~/tmp/scratch/RtmpMOWMom’ ‘~/tmp/scratch/RtmpNiZ2sC’   ‘~/tmp/scratch/RtmpOUaPaj’ ‘~/tmp/scratch/RtmpP5Vn9J’   ‘~/tmp/scratch/RtmpPEvezc’ ‘~/tmp/scratch/RtmpPJM1wP’   ‘~/tmp/scratch/RtmpQe2ftJ’ ‘~/tmp/scratch/RtmpQeMZGP’   ‘~/tmp/scratch/RtmpSUAXAj’ ‘~/tmp/scratch/RtmpSchvuK’   ‘~/tmp/scratch/RtmpShBhf6’ ‘~/tmp/scratch/RtmpTPyayk’   ‘~/tmp/scratch/RtmpTeOwvd’ ‘~/tmp/scratch/RtmpTqUiLe’   ‘~/tmp/scratch/RtmpTqxndW’ ‘~/tmp/scratch/RtmpTyhmv7’   ‘~/tmp/scratch/RtmpU6wBhi’ ‘~/tmp/scratch/RtmpUrLoSl’   ‘~/tmp/scratch/RtmpVT6sIg’ ‘~/tmp/scratch/RtmpVcS8hC’   ‘~/tmp/scratch/RtmpX7Ya9U’ ‘~/tmp/scratch/RtmpXqLEUi’   ‘~/tmp/scratch/RtmpYIGVza’ ‘~/tmp/scratch/RtmpZAvcpc’   ‘~/tmp/scratch/RtmpZEWGK2’ ‘~/tmp/scratch/RtmpZLRECh’   ‘~/tmp/scratch/Rtmpa2KOns’ ‘~/tmp/scratch/Rtmpa42ptN’   ‘~/tmp/scratch/Rtmpa7JQWI’ ‘~/tmp/scratch/RtmpaBS10A’   ‘~/tmp/scratch/Rtmpao10r6’ ‘~/tmp/scratch/RtmpbnKDXQ’   ‘~/tmp/scratch/Rtmpbx16BP’ ‘~/tmp/scratch/RtmpbziWpN’   ‘~/tmp/scratch/Rtmpcj30uH’ ‘~/tmp/scratch/RtmpcnBGKa’   ‘~/tmp/scratch/RtmpdH9j1i’ ‘~/tmp/scratch/RtmpeNIBI2’   ‘~/tmp/scratch/RtmpeYupQf’ ‘~/tmp/scratch/Rtmper876u’   ‘~/tmp/scratch/Rtmpfo6nkH’ ‘~/tmp/scratch/RtmpftTfdp’   ‘~/tmp/scratch/Rtmpg5ad7l’ ‘~/tmp/scratch/Rtmpg9M0nV’   ‘~/tmp/scratch/RtmpgOxmFH’ ‘~/tmp/scratch/RtmpgQ4szs’   ‘~/tmp/scratch/Rtmph24Inf’ ‘~/tmp/scratch/Rtmph7PCys’   ‘~/tmp/scratch/Rtmph9gWOq’ ‘~/tmp/scratch/RtmphsePIR’   ‘~/tmp/scratch/RtmpiPlWek’ ‘~/tmp/scratch/RtmpiW6Tfw’   ‘~/tmp/scratch/RtmpifstyQ’ ‘~/tmp/scratch/RtmpkOqg5e’   ‘~/tmp/scratch/RtmpkSrtPm’ ‘~/tmp/scratch/Rtmpl2uMbd’   ‘~/tmp/scratch/RtmplZhBj4’ ‘~/tmp/scratch/RtmpnIc96v’   ‘~/tmp/scratch/Rtmpo3y65F’ ‘~/tmp/scratch/RtmpoDTSjb’   ‘~/tmp/scratch/RtmpqFTbeb’ ‘~/tmp/scratch/RtmpqKf7iK’   ‘~/tmp/scratch/RtmpqOEg6w’ ‘~/tmp/scratch/RtmpqVk7GX’   ‘~/tmp/scratch/RtmprZYTjS’ ‘~/tmp/scratch/Rtmprd0AGS’   ‘~/tmp/scratch/RtmpreL96i’ ‘~/tmp/scratch/RtmprvDygw’   ‘~/tmp/scratch/RtmpsB5BsH’ ‘~/tmp/scratch/RtmpsGDAIo’   ‘~/tmp/scratch/RtmpsPrslp’ ‘~/tmp/scratch/RtmptObGyj’   ‘~/tmp/scratch/Rtmptsy7qD’ ‘~/tmp/scratch/RtmptzNtAB’   ‘~/tmp/scratch/RtmpuFpnoA’ ‘~/tmp/scratch/Rtmpv3lTvF’   ‘~/tmp/scratch/RtmpvgquAL’ ‘~/tmp/scratch/RtmpxBgnK3’   ‘~/tmp/scratch/RtmpytAQMx’ ‘~/tmp/scratch/RtmpytN8br’   ‘~/tmp/scratch/RtmpzCxnbI’ ‘~/tmp/scratch/Rtmpzvt8zj’   ‘~/tmp/scratch/xvfb-run.1nwuKi’ ‘~/tmp/scratch/xvfb-run.2DzE1E’   ‘~/tmp/scratch/xvfb-run.4Qm6Vo’ ‘~/tmp/scratch/xvfb-run.4n1cZC’   ‘~/tmp/scratch/xvfb-run.5nY5EM’ ‘~/tmp/scratch/xvfb-run.6AxEJ5’   ‘~/tmp/scratch/xvfb-run.6HqoO2’ ‘~/tmp/scratch/xvfb-run.6LyU9f’   ‘~/tmp/scratch/xvfb-run.8B275u’ ‘~/tmp/scratch/xvfb-run.8HkOLs’   ‘~/tmp/scratch/xvfb-run.9T7Xm1’ ‘~/tmp/scratch/xvfb-run.AKUfVn’   ‘~/tmp/scratch/xvfb-run.AqE7bg’ ‘~/tmp/scratch/xvfb-run.B9Cmn7’   ‘~/tmp/scratch/xvfb-run.BMtOds’ ‘~/tmp/scratch/xvfb-run.FYpNgM’   ‘~/tmp/scratch/xvfb-run.IExDxs’ ‘~/tmp/scratch/xvfb-run.JwiXp1’   ‘~/tmp/scratch/xvfb-run.OxEQVg’ ‘~/tmp/scratch/xvfb-run.P4ZcXV’   ‘~/tmp/scratch/xvfb-run.PInC1i’ ‘~/tmp/scratch/xvfb-run.Q5zPUm’   ‘~/tmp/scratch/xvfb-run.QKc6GH’ ‘~/tmp/scratch/xvfb-run.RHZ3Nj’   ‘~/tmp/scratch/xvfb-run.Sg2Jsd’ ‘~/tmp/scratch/xvfb-run.SuMUNd’   ‘~/tmp/scratch/xvfb-run.TFiqtr’ ‘~/tmp/scratch/xvfb-run.U3f7lx’   ‘~/tmp/scratch/xvfb-run.UmS7kB’ ‘~/tmp/scratch/xvfb-run.XpEkaG’   ‘~/tmp/scratch/xvfb-run.XyeSiQ’ ‘~/tmp/scratch/xvfb-run.advf3g’   ‘~/tmp/scratch/xvfb-run.bcPlUI’ ‘~/tmp/scratch/xvfb-run.covWmJ’   ‘~/tmp/scratch/xvfb-run.eoyzpF’ ‘~/tmp/scratch/xvfb-run.eu4ciH’   ‘~/tmp/scratch/xvfb-run.gTaeis’ ‘~/tmp/scratch/xvfb-run.l3Ik01’   ‘~/tmp/scratch/xvfb-run.lJdTJz’ ‘~/tmp/scratch/xvfb-run.nOkIbG’   ‘~/tmp/scratch/xvfb-run.oA0ruR’ ‘~/tmp/scratch/xvfb-run.oZTPQP’   ‘~/tmp/scratch/xvfb-run.prHNyu’ ‘~/tmp/scratch/xvfb-run.qHVjEu’   ‘~/tmp/scratch/xvfb-run.rIDtDq’ ‘~/tmp/scratch/xvfb-run.rksNZW’   ‘~/tmp/scratch/xvfb-run.uMK3xk’ ‘~/tmp/scratch/xvfb-run.xB8Sj4’   ‘~/tmp/scratch/xvfb-run.xh6oZP’ ‘~/tmp/scratch/xvfb-run.yehFJW’
• DONE

Status: 2 NOTEs