• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 12:06:32 UTC
• checking for file ‘MALDIquant/DESCRIPTION’ ... OK
• this is package ‘MALDIquant’ version ‘1.22.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘MALDIquant’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking whether startup messages can be suppressed ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/10s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/6s] OK
• checking for unstated dependencies in ‘demo’ ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/6s] OK   Running ‘testthat.R’ [4s/5s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [7s/9s] OK
• checking PDF version of manual ... [7s/10s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0DD4i9’ ‘~/tmp/scratch/Rtmp1aPkFN’   ‘~/tmp/scratch/Rtmp1ceP0v’ ‘~/tmp/scratch/Rtmp4sl8QK’   ‘~/tmp/scratch/Rtmp4wvppb’ ‘~/tmp/scratch/Rtmp5249ZD’   ‘~/tmp/scratch/Rtmp5ZRNfC’ ‘~/tmp/scratch/Rtmp6NeTkH’   ‘~/tmp/scratch/Rtmp6hfzJA’ ‘~/tmp/scratch/Rtmp7MyU4h’   ‘~/tmp/scratch/Rtmp7xPXlb’ ‘~/tmp/scratch/Rtmp8q3e8k’   ‘~/tmp/scratch/Rtmp9QFJnU’ ‘~/tmp/scratch/Rtmp9SABaO’   ‘~/tmp/scratch/Rtmp9gFqAt’ ‘~/tmp/scratch/RtmpA69yVO’   ‘~/tmp/scratch/RtmpBoE29R’ ‘~/tmp/scratch/RtmpC8hEon’   ‘~/tmp/scratch/RtmpCFQn6V’ ‘~/tmp/scratch/RtmpDP1UiS’   ‘~/tmp/scratch/RtmpEXZb71’ ‘~/tmp/scratch/RtmpEiQmqn’   ‘~/tmp/scratch/RtmpEl1jfv’ ‘~/tmp/scratch/RtmpExYknQ’   ‘~/tmp/scratch/RtmpFGT2Ux’ ‘~/tmp/scratch/RtmpFTZopy’   ‘~/tmp/scratch/RtmpGTmTKN’ ‘~/tmp/scratch/RtmpIHdOzW’   ‘~/tmp/scratch/RtmpIgQ7hP’ ‘~/tmp/scratch/RtmpIwrWFu’   ‘~/tmp/scratch/RtmpJ1RMvi’ ‘~/tmp/scratch/RtmpJC0p0Q’   ‘~/tmp/scratch/RtmpJYFGZP’ ‘~/tmp/scratch/RtmpKIE6Qi’   ‘~/tmp/scratch/RtmpKe5Psm’ ‘~/tmp/scratch/RtmpLboX5Y’   ‘~/tmp/scratch/RtmpM9qIpM’ ‘~/tmp/scratch/RtmpMCkov7’   ‘~/tmp/scratch/RtmpMM5XYm’ ‘~/tmp/scratch/RtmpMXkdAZ’   ‘~/tmp/scratch/RtmpORIP4S’ ‘~/tmp/scratch/RtmpPMRT6l’   ‘~/tmp/scratch/RtmpQ91TbE’ ‘~/tmp/scratch/RtmpQHp37e’   ‘~/tmp/scratch/RtmpQeMZGP’ ‘~/tmp/scratch/RtmpQlXv6x’   ‘~/tmp/scratch/RtmpR7n5iw’ ‘~/tmp/scratch/RtmpRIMWHw’   ‘~/tmp/scratch/RtmpSeWRMW’ ‘~/tmp/scratch/RtmpTeOwvd’   ‘~/tmp/scratch/RtmpTf9pZK’ ‘~/tmp/scratch/RtmpTqUiLe’   ‘~/tmp/scratch/RtmpUBtWUN’ ‘~/tmp/scratch/RtmpUCM361’   ‘~/tmp/scratch/RtmpUlKPEB’ ‘~/tmp/scratch/RtmpUoXORI’   ‘~/tmp/scratch/RtmpVT6sIg’ ‘~/tmp/scratch/RtmpVavwd6’   ‘~/tmp/scratch/RtmpVcS8hC’ ‘~/tmp/scratch/RtmpVeNCTH’   ‘~/tmp/scratch/RtmpW4vvzf’ ‘~/tmp/scratch/RtmpWVRN0r’   ‘~/tmp/scratch/RtmpXO8LQd’ ‘~/tmp/scratch/RtmpXaZw3S’   ‘~/tmp/scratch/RtmpYd0Y6N’ ‘~/tmp/scratch/RtmpYwkIFf’   ‘~/tmp/scratch/RtmpZGtyf3’ ‘~/tmp/scratch/RtmpZSGZa6’   ‘~/tmp/scratch/RtmpaS6dnk’ ‘~/tmp/scratch/Rtmpb1SwQ9’   ‘~/tmp/scratch/RtmpbHEfk1’ ‘~/tmp/scratch/RtmpcAhmDP’   ‘~/tmp/scratch/RtmpcDa4Mg’ ‘~/tmp/scratch/RtmpcJdQtS’   ‘~/tmp/scratch/Rtmpcy4MlX’ ‘~/tmp/scratch/Rtmpd8cx9r’   ‘~/tmp/scratch/RtmpdDH5v4’ ‘~/tmp/scratch/RtmpdyrgYN’   ‘~/tmp/scratch/RtmpeYupQf’ ‘~/tmp/scratch/Rtmped2XjU’   ‘~/tmp/scratch/RtmpfdPk5X’ ‘~/tmp/scratch/Rtmphfv9HT’   ‘~/tmp/scratch/Rtmphi1nVu’ ‘~/tmp/scratch/Rtmphu191h’   ‘~/tmp/scratch/Rtmphu7d6B’ ‘~/tmp/scratch/RtmpiOoDXC’   ‘~/tmp/scratch/RtmpiPlWek’ ‘~/tmp/scratch/RtmpiRfMKr’   ‘~/tmp/scratch/RtmpiemSCW’ ‘~/tmp/scratch/RtmpjD02UK’   ‘~/tmp/scratch/Rtmpk6V144’ ‘~/tmp/scratch/RtmpkMTYN9’   ‘~/tmp/scratch/RtmpkVTi5p’ ‘~/tmp/scratch/RtmpkXBvws’   ‘~/tmp/scratch/Rtmpkda39O’ ‘~/tmp/scratch/RtmpkxUP4R’   ‘~/tmp/scratch/RtmplXyxtt’ ‘~/tmp/scratch/RtmplZBvBU’   ‘~/tmp/scratch/Rtmpm7HMOn’ ‘~/tmp/scratch/RtmpnXvRRd’   ‘~/tmp/scratch/RtmpoXm514’ ‘~/tmp/scratch/RtmppOOpzk’   ‘~/tmp/scratch/Rtmppd011a’ ‘~/tmp/scratch/RtmppzHVEo’   ‘~/tmp/scratch/RtmprZYTjS’ ‘~/tmp/scratch/RtmprrhqtV’   ‘~/tmp/scratch/Rtmps6RBGg’ ‘~/tmp/scratch/Rtmpsh5xul’   ‘~/tmp/scratch/RtmptEbLpq’ ‘~/tmp/scratch/RtmptObGyj’   ‘~/tmp/scratch/RtmptUJ39H’ ‘~/tmp/scratch/Rtmpta2sP3’   ‘~/tmp/scratch/RtmptsGpqL’ ‘~/tmp/scratch/Rtmpu1mQNX’   ‘~/tmp/scratch/RtmpuXJevz’ ‘~/tmp/scratch/RtmpufQDkF’   ‘~/tmp/scratch/RtmpvAUsnS’ ‘~/tmp/scratch/RtmpvZJ6j5’   ‘~/tmp/scratch/Rtmpvic69P’ ‘~/tmp/scratch/RtmpvmAm3A’   ‘~/tmp/scratch/Rtmpw7k1TE’ ‘~/tmp/scratch/Rtmpy6q1Ma’   ‘~/tmp/scratch/RtmpyAHm6g’ ‘~/tmp/scratch/RtmpyAaK3u’   ‘~/tmp/scratch/RtmpyE7Rhq’ ‘~/tmp/scratch/RtmpytN8br’   ‘~/tmp/scratch/RtmpzP3lsY’ ‘~/tmp/scratch/Rtmpzvt8zj’   ‘~/tmp/scratch/xvfb-run.0Q7eJh’ ‘~/tmp/scratch/xvfb-run.2H7xXv’   ‘~/tmp/scratch/xvfb-run.4WFIjx’ ‘~/tmp/scratch/xvfb-run.50A0jp’   ‘~/tmp/scratch/xvfb-run.50Tt2P’ ‘~/tmp/scratch/xvfb-run.5pci0d’   ‘~/tmp/scratch/xvfb-run.6HqoO2’ ‘~/tmp/scratch/xvfb-run.6LyU9f’   ‘~/tmp/scratch/xvfb-run.6Z638R’ ‘~/tmp/scratch/xvfb-run.AqbVi0’   ‘~/tmp/scratch/xvfb-run.AvJGUk’ ‘~/tmp/scratch/xvfb-run.CCdtMW’   ‘~/tmp/scratch/xvfb-run.CDuUWG’ ‘~/tmp/scratch/xvfb-run.CkEQeI’   ‘~/tmp/scratch/xvfb-run.DvWAou’ ‘~/tmp/scratch/xvfb-run.Fhkp1X’   ‘~/tmp/scratch/xvfb-run.FpDZNv’ ‘~/tmp/scratch/xvfb-run.FxcYNl’   ‘~/tmp/scratch/xvfb-run.G38G0O’ ‘~/tmp/scratch/xvfb-run.J821fQ’   ‘~/tmp/scratch/xvfb-run.JzFQrK’ ‘~/tmp/scratch/xvfb-run.K6jR9L’   ‘~/tmp/scratch/xvfb-run.KeoWz1’ ‘~/tmp/scratch/xvfb-run.N2hW7I’   ‘~/tmp/scratch/xvfb-run.N8zVwg’ ‘~/tmp/scratch/xvfb-run.Nb6lpY’   ‘~/tmp/scratch/xvfb-run.Npdb6c’ ‘~/tmp/scratch/xvfb-run.P4ZcXV’   ‘~/tmp/scratch/xvfb-run.RHZ3Nj’ ‘~/tmp/scratch/xvfb-run.SnpbCE’   ‘~/tmp/scratch/xvfb-run.SuMUNd’ ‘~/tmp/scratch/xvfb-run.UAV0BE’   ‘~/tmp/scratch/xvfb-run.W6FrmJ’ ‘~/tmp/scratch/xvfb-run.YynhU5’   ‘~/tmp/scratch/xvfb-run.ZCOpSP’ ‘~/tmp/scratch/xvfb-run.fb90cU’   ‘~/tmp/scratch/xvfb-run.h0XEx1’ ‘~/tmp/scratch/xvfb-run.iC0uhc’   ‘~/tmp/scratch/xvfb-run.k73uiT’ ‘~/tmp/scratch/xvfb-run.l3Ik01’   ‘~/tmp/scratch/xvfb-run.lJdTJz’ ‘~/tmp/scratch/xvfb-run.nLjJud’   ‘~/tmp/scratch/xvfb-run.nOkIbG’ ‘~/tmp/scratch/xvfb-run.qHVjEu’   ‘~/tmp/scratch/xvfb-run.r1SK3H’ ‘~/tmp/scratch/xvfb-run.rEAE49’   ‘~/tmp/scratch/xvfb-run.s5pefo’ ‘~/tmp/scratch/xvfb-run.srg7YM’   ‘~/tmp/scratch/xvfb-run.xAxjeW’ ‘~/tmp/scratch/xvfb-run.xB8Sj4’   ‘~/tmp/scratch/xvfb-run.yNlwHj’ ‘~/tmp/scratch/xvfb-run.ykAnLz’
• DONE

Status: 1 NOTE