• using R Under development (unstable) (2025-10-31 r88977)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-7) 15.2.0     GNU Fortran (Debian 15.2.0-7) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘KSEAapp/DESCRIPTION’ ... OK
• this is package ‘KSEAapp’ version ‘0.99.0’
• checking CRAN incoming feasibility ... [0s/0s] NOTE Maintainer: ‘Danica D. Wiredja <dwiredja@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: person(given = c("Danica", "D."),                     family = "Wiredja",                     role = c("aut", "cre"),                     email = "dwiredja@gmail.com") as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘KSEAapp’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/6s] OK
• checking Rd files ... [0s/0s] NOTE checkRd: (-1) KSEA.Complete.Rd:19: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Complete.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Complete.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Complete.Rd:22-23: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Complete.Rd:24: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Complete.Rd:25: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.1.Rd:9: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.1.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.1.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.1.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.1.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.1.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.1.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.2.Rd:9: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.2.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.2.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.2.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.2.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.2.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.2.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.3.Rd:9: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.3.Rd:10: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.3.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.3.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.3.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.3.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) KSEA.Scores.3.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) PX.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) PX.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) PX.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) PX.Rd:15-16: Lost braces in \itemize; meant \describe ? checkRd: (-1) PX.Rd:17: Lost braces in \itemize; meant \describe ? checkRd: (-1) PX.Rd:18: Lost braces in \itemize; meant \describe ?
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... NOTE Found the following files/directories:   ‘KSEA Bar Plot.tiff’ ‘KSEA Kinase Scores.csv’   ‘KSEA.Merged.Heatmap.png’ ‘Kinase-Substrate Links.csv’
• DONE

Status: 3 NOTEs