- using R Under development (unstable) (2025-10-20 r88955)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.2.0-4) 15.2.0
GNU Fortran (Debian 15.2.0-4) 15.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘IFC/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘IFC’ version ‘0.2.1’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... INFO
Package suggested but not available for checking: ‘IFCdata’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘IFC’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking whether startup messages can be suppressed ... [1s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [39s/47s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [1s/1s] OK
- checking PDF version of manual ... [12s/15s] OK
- checking HTML version of manual ... [6s/11s] NOTE
Found the following HTML validation problems:
FCS_check_keywords.html:73:1 (FCS_check_keywords.Rd:27): Warning: missing </ul> before </div>
adjustGraph.html:61:1 (adjustGraph.Rd:19): Warning: missing </ul> before </div>
base_axis_constr.html:54:1 (base_axis_constr.Rd:14): Warning: missing </ul> before </div>
base_hist_constr.html:92:1 (base_hist_constr.Rd:40): Warning: missing </ul> before </div>
checkColor.html:46:1 (checkColor.Rd:10): Warning: missing </ul> before </div>
checksumDAF.html:56:1 (checksumDAF.Rd:15): Warning: missing </ul> before </div>
checksumXIF.html:51:1 (checksumXIF.Rd:12): Warning: missing </ul> before </div>
cpp_assert.html:57:1 (cpp_assert.Rd:16): Warning: missing </ul> before </div>
cpp_computeGamma.html:40:1 (cpp_computeGamma.Rd:7): Warning: missing </ul> before </div>
cpp_ell_coord.html:44:1 (cpp_ell_coord.Rd:9): Warning: missing </ul> before </div>
cpp_fast_sample.html:48:1 (cpp_fast_sample.Rd:11): Warning: missing </ul> before </div>
cpp_get_bytes_order.html:52:1 (cpp_get_bytes_order.Rd:13): Warning: missing </ul> before </div>
cpp_int32_to_uint32.html:40:1 (cpp_int32_to_uint32.Rd:7): Warning: missing </ul> before </div>
cpp_int64_to_uint64.html:40:1 (cpp_int64_to_uint64.Rd:7): Warning: missing </ul> before </div>
cpp_inv_smoothLinLog.html:54:1 (cpp_inv_smoothLinLog.Rd:13): Warning: missing </ul> before </div>
cpp_mark.html:62:1 (cpp_mark.Rd:19): Warning: missing </ul> before </div>
cpp_mask.html:49:1 (cpp_mask.Rd:11): Warning: missing </ul> before </div>
cpp_normalize.html:57:1 (cpp_normalize.Rd:16): Warning: missing </ul> before </div>
cpp_offset_to_raw.html:44:1 (cpp_offset_to_raw.Rd:9): Warning: missing </ul> before </div>
cpp_pnt_in_gate.html:55:1 (cpp_pnt_in_gate.Rd:16): Warning: missing </ul> before </div>
cpp_raw_to_offset.html:44:1 (cpp_raw_to_offset.Rd:9): Warning: missing </ul> before </div>
cpp_replace_non_finite.html:44:1 (cpp_replace_non_finite.Rd:9): Warning: missing </ul> before </div>
cpp_smoothLinLog.html:54:1 (cpp_smoothLinLog.Rd:13): Warning: missing </ul> before </div>
cpp_uint32_to_int32.html:40:1 (cpp_uint32_to_int32.Rd:7): Warning: missing </ul> before </div>
cpp_uint32_to_raw.html:40:1 (cpp_uint32_to_raw.Rd:7): Warning: missing </ul> before </div>
cpp_uint64_to_int64.html:40:1 (cpp_uint64_to_int64.Rd:7): Warning: missing </ul> before </div>
cpp_v_int32_to_uint32.html:40:1 (cpp_v_int32_to_uint32.Rd:7): Warning: missing </ul> before </div>
cpp_v_int64_to_uint64.html:40:1 (cpp_v_int64_to_uint64.Rd:7): Warning: missing </ul> before </div>
cpp_writeBMP.html:40:1 (cpp_writeBMP.Rd:7): Warning: missing </ul> before </div>
endPB.html:46:1 (endPB.Rd:10): Warning: missing </ul> before </div>
expand_list.html:50:1 (expand_list.Rd:12): Warning: missing </ul> before </div>
fetch_seed.html:46:1 (fetch_seed.Rd:10): Warning: missing </ul> before </div>
formatn.html:58:1 (formatn.Rd:16): Warning: missing </ul> before </div>
getLuminance.html:46:1 (getLuminance.Rd:10): Warning: missing </ul> before </div>
modifyGamma.html:50:1 (modifyGamma.Rd:12): Warning: missing </ul> before </div>
objectWrite.html:54:1 (objectWrite.Rd:14): Warning: missing </ul> before </div>
plot_base.html:46:1 (plot_base.Rd:10): Warning: missing </ul> before </div>
plot_lattice.html:46:1 (plot_lattice.Rd:10): Warning: missing </ul> before </div>
plot_raster.html:51:1 (plot_raster.Rd:13): Warning: missing </ul> before </div>
plot_stats.html:46:1 (plot_stats.Rd:10): Warning: missing </ul> before </div>
popsGetAffiliation.html:46:1 (popsGetAffiliation.Rd:10): Warning: missing </ul> before </div>
popsGetLevels.html:46:1 (popsGetLevels.Rd:10): Warning: missing </ul> before </div>
popsOrderNodes.html:46:1 (popsOrderNodes.Rd:10): Warning: missing </ul> before </div>
protectn.html:46:1 (protectn.Rd:10): Warning: missing </ul> before </div>
readFCSdata.html:78:1 (readFCSdata.Rd:30): Warning: missing </ul> before </div>
readFCSdelimiter.html:62:1 (readFCSdelimiter.Rd:18): Warning: missing </ul> before </div>
readFCSheader.html:64:1 (readFCSheader.Rd:22): Warning: missing </ul> before </div>
readFCStext.html:83:1 (readFCStext.Rd:33): Warning: missing </ul> before </div>
rev_string.html:46:1 (rev_string.Rd:10): Warning: missing </ul> before </div>
setPB.html:54:1 (setPB.Rd:14): Warning: missing </ul> before </div>
specialr.html:58:1 (specialr.Rd:18): Warning: missing </ul> before </div>
splitn.html:78:1 (splitn.Rd:30): Warning: missing </ul> before </div>
toCapFirstOnly.html:46:1 (toCapFirstOnly.Rd:10): Warning: missing </ul> before </div>
toEllipse.html:54:1 (toEllipse.Rd:14): Warning: missing </ul> before </div>
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE